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ECT2 Gene

protein-coding   GIFtS: 60

GC03P173951
epithelial cell transforming sequence 2 oncogene
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
FLJ10461 2
MGC138291 2
Descriptions
Epithelial cell-transforming sequence 2 oncogene 3
epithelial cell transforming sequence 2 oncogene 2
epithelial cell transforming sequence 2 oncogene protein 2
External Ids
HGNC: 31551
Entrez Gene: 18942
UniProtKB: Q9H8V33
Ensembl: ENSG000001143467
Search outside databases for aliases for ECT2 gene

Previous GC identifers: GC03P169518 GC03P173499 GC03P173870 GC03P173793 GC03P173773

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ECT2:
The protein encoded by this gene is a transforming protein that is related to Rho-specific exchange
factors and yeast cell cycle regulators. The expression of this gene is elevated with the onset of
DNA synthesis and remains elevated during G2 and M phases. In situ hybridization analysis showed
that expression is at a high level in cells undergoing mitosis in regenerating liver. Thus, this
protein is expressed in a cell cycle-dependent manner during liver regeneration, and is thought to
have an important role in the regulation of cytokinesis. [provided by RefSeq]

UniProtKB/Swiss-Prot: ECT2_HUMAN, Q9H8V3
Function: Binds highly specifically to RhoA, RhoC and Rac proteins, but does not appear to catalyze
guanine nucleotide exchange (By similarity)

Gene Wiki entry for ECT2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ECT2 gene  

Entrez Gene cytogenetic band: 3q26.1-q26.2   Ensembl cytogenetic band:  3q26.31   HGNC cytogenetic band: 3q26.1-q26.2

ECT2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P173951:     (about GC identifiers)

Start:
173,951,207 bp from pter
End:
174,021,957 bp from pter
Size:
70,751 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000003.10  NT_005612.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: ECT2_HUMAN, Q9H8V3 (See protein sequence)
Recommended Name: Protein ECT2  
Size: 883 amino acids; 100051 Da
Subunit: Associates with RACGAP1 at anaphase and during cytokinesis
Caution: It is uncertain whether Met-1 or Met-146 is the initiator
Secondary accessions: Q2M269 Q9NSV8 Q9NVW9
Alternative splicing: 2 isoforms:  Q9H8V3-1   Q9H8V3-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_060568.3  

    ENSEMBL proteins: 
    ENSP00000376457 ENSP00000232458 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Sigma-Aldrich CompoZr ZFN for ECT2  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (ECT2)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    About this table

    Antibodies for ECT2: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for ECT2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (ECT2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (ECT2)
    Novus Biologicals Antibody for ECT2

    Assays for ECT2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR001331 GDS_CDC24_CS
     IPR000219 DH-domain
     IPR001849 Pleckstrin_homology
     IPR001357 BRCT


       GeneDecks  ECT2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9H8V3

    ProtoNet protein and cluster: Q9H8V3

    3 Blocks protein families:
    IPB000219 DH domain
    IPB001357 BRCT domain
    IPB001849 Pleckstrin-like


    UniProtKB/Swiss-Prot: ECT2_HUMAN, Q9H8V3
    Similarity: Contains 2 BRCT domains
    Similarity: Contains 1 DH (DBL-homology) domain
    Similarity: Contains 1 PH domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ECT2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018098

                  Applied Biosystems Silencer® siRNAs for ECT2

                  Sigma-Aldrich siRNA and siRNA Panels for ECT2  
                         Sigma-Aldrich shRNA Panels and shRNA for ECT2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for ECT2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_018098
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_018098
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_018098 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_018098

    UniProtKB/Swiss-Prot: ECT2_HUMAN, Q9H8V3
    Function: Binds highly specifically to RhoA, RhoC and Rac proteins, but does not appear to catalyze
    guanine nucleotide exchange (By similarity)

    Genatlas biochemistry entry for ECT2:
    mouse Ect2 related proto-oncogene 2

    2 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Ect2):

    lethality-prenatal/perinatalno phenotypic analysis

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004871 signal transducer activity IMP12761501
    GO:0005085 guanyl-nucleotide exchange factor activity IEA--
    GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA--
    GO:0005515 protein binding IPI16129829
    GO:0017048 Rho GTPase binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    3 Invitrogen iPath™ Online BioAtlas - Pathways for ECT2 (Maps provided by GeneGo):
     Regulation of CDC42 activity
     Regulation of RAC1 activity
     RhoA regulation pathway

       GeneDecks  ECT2 for the pathways selected above  
    About GeneDecksing

    3 Millipore Pathways for ECT2
     G-protein signaling Regulation of CDC42 activity
     G-protein signaling RhoA regulation pathway
     G-protein signaling Regulation of RAC1 activity

       GeneDecks  ECT2 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  ECT2 


    5/93 Interacting proteins for ECT2 (Q9H8V31, 2 ENSP000002324583) via UniProtKB, MINT, and/or STRING (see all 93 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RACGAP1Q9H0H52, ENSP000003098713MINT-6166634 STRING (score=.996)
    GRB2P629931EBI-1054039, EBI-401755
    NCK1P163331EBI-1054039, EBI-389883
    PIK3R1P279861EBI-1054039, EBI-79464
    RACGAP1PQ9H0H52MINT-6166634
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000902 cell morphogenesis IEA--
    GO:0007242 intracellular signaling cascade IEA--
    GO:0035023 regulation of Rho protein signal transduction IEA--
    GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade IMP12761501
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Sigma-Aldrich Small Molecules for ECT2:
    Inhibitor

    Browse Tocris compounds for ECT2

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ECT2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018098

                  Sigma-Aldrich siRNA and siRNA Panels for ECT2  
                         Sigma-Aldrich shRNA Panels and shRNA for ECT2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_018098  

    REFSEQ mRNAs for ECT2 gene: 

    NM_018098.4   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_018098  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_018098
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_018098
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_018098 

    Additional cDNA sequence: 

    AK001323.1 AK001515.1 AK023267.1 AK027713.1 AK308391.1 AK314581.1 AL137710.1 AY376439.1 
    BC006838.1 BC006987.1 BC070038.1 BC112086.1 DQ847274.1 

    17 DOTS entries:

    DT.97792898  DT.91760878  DT.95197878  DT.120841247  DT.95197867  DT.120841246  DT.120841265  DT.95197895 
    DT.100790050  DT.120841248  DT.95197876  DT.97770594  DT.97789650  DT.95197881  DT.95197893  DT.99929308 
    DT.99990338 

    24/181 AceView cDNA sequences (see all 181 ):

    AI823992 BQ925030 AW963051 AA301103 AU128730 AI038579 AI566535 CB128759 
    BM770300 BM995738 AW511311 BG613806 BC070038 BM840493 AI738508 AI370562 
    CD654947 BM787257 BQ229951 AU129613 BM827335 CD652117 BU619490 AK027713 

    highest scoring ESTs for ECT2:

    AI823992 AA172248 AA279942 AA343765 AA506076 AA578848 AA766315 AA769228 AA973322 AA992180 

    Unigene Cluster for ECT2:

    Epithelial cell transforming sequence 2 oncogene
    Hs.518299  [show with all ESTs]
    Unigene Representative Sequence: AY376439


    GeneLoc Exon Structure

    5/13 Alternative Splicing Database (ASD) splice patterns (SP) for ECT2 (see all 13 )

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^
    SP1:                                            -                                                                                                               
    SP2:                                                                                                                                                            
    SP3:                    -     -                 -                                                                                                               
    SP4:                                                                                                                                                            
    SP5:                    -     -                                                                                                                                 

    ExUns: 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b ^ 25a · 25b ^ 26 ^ 27a · 27b ^ 28a · 28b
    SP1:                                      -     -                                                   
    SP2:                                      -     -                             -     -               
    SP3:                                                                                                
    SP4:                                      -     -                             -                     
    SP5:                                                                                                

    About this scheme

    ECgene alternative splicing isoforms for ECT2

    2 Ensembl transcripts including schematic representations:
    ENST00000392692  ENST00000232458  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    ECT2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for ECT2

    1 / 2 / 3

    6 probe-sets matching ECT2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    59461_at2, 3 U95-C 1 1.00 1.00 1.00 1.00 AI823992 1.00 1.00 1.00 1

    74829_at2, 3 U95-E 1 0.94 1.00 0.32 0.31 AI738508 0.60 1.00 0.82 1

    219787_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_018098 0.60 1.00 0.82 1

    234992_x_at2, 3 U133-B 1 0.73 1.00 -- -- BG170335 0.60 1.00 0.82 1

    219787_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    234992_x_at2 U133Plus2 1 0.73 1.00 -- -- -- -- -- -- --
    GeneDecks  ECT2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TATGTGCCAC

    SOURCE GeneReport for Unigene cluster: Hs.518299
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for ECT2 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    ECT21   -- epithelial cell transforming sequence 2 oncogene 92.83(n)
    94.79(a)
    488172  XM_845748.1  XP_850841.1 
    chimpanzee
    (Pan troglodytes)
    ECT21   -- epithelial cell transforming sequence 2 oncogene 98.77(n)
    98.73(a)
    460853  XM_516880.2  XP_516880.2 
    cow
    (Bos taurus)
    ECT21   -- epithelial cell transforming sequence 2 oncogene 91.69(n)
    92.3(a)
    504746  XM_580911.3  XP_580911.3 
    rat
    (Rattus norvegicus)
    Ect21   -- epithelial cell transforming sequence 2 oncogene 86.39(n)
    90.36(a)
    361921  XM_342220.3  XP_342221.2 
    mouse
    (Mus musculus)
    Ect21, 5 35
    ect2 oncogene1, 5 87.71(n)1
    94.17(a)1
    136051  NM_007900.21  NP_031926.11 
     AI5285365  AK0401745  (see all 12)
    About this table        Species with no ortholog for ECT2

    ENSEMBL Gene Tree for ECT2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for ECT2 gene
    ARHGEF172  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/356 NCBI SNPs in ECT2 are shown (see all 356 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 101)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 3 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs43316941,2
    A,C,F,H174021044(+) ATGGGC/TGGGTG 1 -- ut31 ese37Minor allele frequency- T:0.48EU EA WA NA 552
    rs347034321,2
    C,F173955058(-) CCAAGC/GTAGTC 1 S/T mis15Minor allele frequency- G:0.01NA EU EA WA 498
    rs126383381,2
    C,F173950404(+) TAATAG/ACAACG 1 -- ng512Minor allele frequency- A:0.13MN EA 1252
    --
    rs130705601,2
    F173950393(+) AATTAC/TTTTCA 1 -- ng51 tfbs32Minor allele frequency- T:0.36MN EA 1252
    --
    rs58544821,2
    F173951166(+) GCCCCT/-CTGGA 1 -- ng512Minor allele frequency- -:0.17MN EA 1252
    rs347427551,2
    F173955811(-) AACCAA/GTATCA 1 L/L syn11Minor allele frequency- G:0.03NA 78
    rs20492301,2
    A,C,F,H,O173963716(+) AACTTA/TGACTT 1 -- int121Minor allele frequency- N:0.00NA EA NS MN EU WA 1580
    rs108048491,2
    A,C,F,H173996988(+) tagcaA/Gtaatc 1 -- int13Minor allele frequency- G:0.20EA WA 298
    rs76465071,2
    A,C,F,H173959113(+) TTAATA/GACATT 1 -- int14Minor allele frequency- G:0.15EU EA WA 416
    rs48944331,2
    A,C,F,H173971770(+) ATCACT/CAGCAT 1 -- int14Minor allele frequency- C:0.50EU EA WA 416
    About this table

    HapMap Linkage Disequilibrium images for ECT2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600586

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/40 PubMed articles for ECT2 gene (see all 40 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1894 HGNC: 3155 AceView: ECT2 Ensembl:ENSG00000114346 euGenes: HUgn1894
    ECgene: ECT2 H-InvDB: ECT2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for ECT2 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for ECT2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
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     Predesigned and custom siRNAs for ECT2 Antibodies for ECT2
     Explore super-pooled esiRNAs Proteins for ECT2
     Lentivirus-delivered shRNAs for ECT2 Small molecules for ECT2
     "Your Favorite Gene" Pathwaysfeedback


      
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