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Aliases & Descriptions for ECH1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 5.3.3.- 3 | | HPXEL 1, 2 |
| | | Descriptions |
|---|
| delta3,5-delta2,4-dienoyl-CoA isomerase 2 | | dienoyl-CoA isomerase 2 | | enoyl Coenzyme A hydratase 1, peroxisomal 2 | | peroxisomal enoyl-CoA hydratase 1 2 | | peroxisomal enoyl-coenzyme A hydratase-like protein 2 |
|
| | Search outside databases for aliases for ECH1 genePrevious GC identifers: GC19M039918 GC19M039697 GC19M043982 |
Summaries for ECH1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ECH1: This gene encodes a member of the hydratase/isomerase superfamily. The gene product shows high sequence similarity to enoyl-coenzyme A (CoA) hydratases of several species, particularly within a conserved domain characteristic of these proteins. The encoded protein, which contains a C-terminal peroxisomal targeting sequence, localizes to the peroxisome. The rat ortholog, which localizes to the matrix of both the peroxisome and mitochondria, can isomerize 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA, indicating that it is a delta3,5-delta2,4-dienoyl-CoA isomerase. This enzyme functions in the auxiliary step of the fatty acid beta-oxidation pathway. Expression of the rat gene is induced by peroxisome proliferators. [provided by RefSeq] UniProtKB/Swiss-Prot: ECH1_HUMAN, Q13011Function: Isomerization of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA (By similarity)Gene Wiki entry for ECH1 |
Genomic Location for ECH1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ECH1 gene 
Entrez Gene cytogenetic band: 19q13.1 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.1ECH1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M043997:
(about GC identifiers)
Start:
|
43,997,902 bp from pter |
End:
|
44,014,337 bp from pter |
Size:
|
16,436 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011109.15
| Proteins for ECH1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ECH1_HUMAN, Q13011 (See
protein sequence)Recommended Name: Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor Size: 328 amino acids; 35816 Da
Subunit: Homohexamer (By similarity)
Subcellular location: Mitochondrion (By similarity). Peroxisome (By similarity)
PDB structures from and Proteopedia :2VRE (3D)
 
Secondary accessions: Q8WVX0 Q96EZ9REFSEQ proteins: NP_001389.2
ENSEMBL proteins: ENSP00000221418
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ECH1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ECH1: Assays for ECH1: | Protein
Domains/ Families for ECH1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q13011
ProtoNet protein and cluster: Q13011 UniProtKB/Swiss-Prot: ECH1_HUMAN, Q13011Similarity: Belongs to the enoyl-CoA hydratase/isomerase family | Gene Function for ECH1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC011792
Applied Biosystems Silencer® siRNAs for ECH1
Sigma-Aldrich siRNA and siRNA Panels for ECH1  Sigma-Aldrich shRNA for ECH1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001398                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001398                                  untagged cDNA clones in CMV expression vector (see all 2): BC011792 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001398
UniProtKB/Swiss-Prot: ECH1_HUMAN, Q13011Function: Isomerization of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA (By similarity)Enzyme Number (IUBMB): EC 5.3.3.- Genatlas biochemistry entry for ECH1:peroxisomal matrix protein,enoyl-CoA hydratase-like3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ECH1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 5/8 Sigma-Aldrich "Your Favorite Gene" Pathways for ECH1 (Your Favorite Gene powered by Ingenuity) (see all 8
) 
UniProtKB/Swiss-Prot: ECH1_HUMAN, Q13011Pathway: Lipid metabolism; fatty acid beta-oxidation 5/6 Interacting proteins for ECH1 (Q130111, 2) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ECH1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ECH1
|
Transcripts for ECH1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC011792
Sigma-Aldrich siRNA and siRNA Panels for ECH1  Sigma-Aldrich shRNA for ECH1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001398 REFSEQ mRNAs for ECH1 gene: NM_001398.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001398               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001398                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001398                                  untagged cDNA clones in CMV expression vector (see all 2): BC011792  Additional cDNA sequence: AK126566.1 AK291860.1 AK301211.1 AY927476.1 BC011792.2 BC014786.1 BC017408.1 CR591368.1 CR593921.1 CR598218.1 CR600133.1 CR600240.1 CR603672.1 CR610523.1 CR611035.1 CR615338.1 CR620208.1 CR620644.1 CR622906.1 CR625294.1 U16660.1 24/30 DOTS entries (see all 30
): DT.75174730 DT.100045126 DT.95097900 DT.100873390 DT.100873375 DT.100873391 DT.121453531 DT.91764374 DT.100873373 DT.95171557 DT.92055209 DT.121453634 DT.101985500 DT.95171554 DT.121453566 DT.95171567 DT.95171569 DT.95299255 DT.100873381 DT.92441002 DT.100802315 DT.100835287 DT.100873382 DT.102833787 24/889 AceView cDNA sequences (see all 889
):AI344583 BX401432 BM974528 BM310387 CB159190 BC011792 BQ675225 CD611407 BU608053 BP870554 BI255093 BE904377 BE613773 AL559615 BQ276342 BQ878641 BX417514 CA406987 CR620208 F18477 BU195742 BV177689 BQ437897 CB147811
highest scoring ESTs for ECH1:AA121210 AA149782 AA149795 AA211653 AA218655 AA306086 AA307959 AA313933 AA315329 AA326065 Unigene Cluster for ECH1: Enoyl Coenzyme A hydratase 1, peroxisomal Hs.196176 [show with all ESTs]Unigene Representative Sequence: AK126566
GeneLoc Exon Structure
5/12 Alternative Splicing Database (ASD) splice patterns (SP) for ECH1 (see all 12
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | · | 10c | |
| SP1: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ECH1
1 Ensembl transcript including schematic representation: ENST00000221418
|
Expression for ECH1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ECH1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ECH1
1 / 2 / 3 4 probe-sets matching ECH1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTGCAGACCC
SOURCE GeneReport for Unigene cluster: Hs.196176
Expression variation in blood from EXPOLDB for ECH1 |
Orthologs for ECH1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ECH1 gene from 5/16 species (see all 16
)
About this table Species with no ortholog for ECH1
ENSEMBL Gene Tree for ECH1 | Paralogs for ECH1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ECH1 gene
- ECHDC32
|
SNPs/Variants for ECH1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ECH1 (up to first 250kb)
|
Disorders & Mutations for ECH1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600696
|
Medical News for ECH1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ECH1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/12 PubMed articles for ECH1 gene (see all 12
):- Isolation and characterization of rat and human cDNAs encoding a novel putative peroxisomal enoyl-CoA hydratase. (PubMed id 7558027)1, 2, 3, 4 Fitzpatrick D.R.... Valle D. (1995)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Polymorphism of delta3,5-delta2,4-dienoyl-coenzyme A isomerase (the ECH1 gene product protein) in human striated muscle tissue. (PubMed id 16615866)3 Kovalyov L.I....Shishkin S.S. (2006)
- A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)3 Stelzl U....Wanker E.E. (2005)
- A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. (PubMed id 15383276)3 Goehler H....Wanker E.E. (2004)
- Overexpression of peroxisome proliferator-activated receptor-alpha (PPARalpha)-regulated genes in liver in the absence of peroxisome proliferation in mice deficient in both L- and D-forms of enoyl-CoA hydratase/dehydrogenase enzymes of peroxisomal beta-oxidation system. (PubMed id 14500732)3 Jia Y....Reddy J.K. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
- Delta3,5-delta2,4-dienoyl-CoA isomerase from rat liver. Molecular characterization. (PubMed id 9417087)3 Filppula S.A....Hiltunen J.K. (1998)
- [Preparation and identification of monoclonal antibody against enoyl-CoA hydratase 1.] (PubMed id 19403386)1 Ju Y.F....Sun Q.H. (2009)
|
Search for ECH1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ECH1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ECH1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ECH1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ECH1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ECH1:

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Incremental update: 13 Oct 2009
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