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Aliases for EBLN3P Gene

Aliases for EBLN3P Gene

  • Endogenous Bornavirus-Like Nucleoprotein 3, Pseudogene 2 3 5
  • Endogenous Bornavirus-Like Nucleoprotein 2 Pseudogene 3
  • Endogenous Bornavirus-Like Nucleoprotein 3 2
  • EBLN3 3

External Ids for EBLN3P Gene

Previous HGNC Symbols for EBLN3P Gene

  • EBLN3

Summaries for EBLN3P Gene

GeneCards Summary for EBLN3P Gene

EBLN3P (Endogenous Bornavirus-Like Nucleoprotein 3, Pseudogene) is a Pseudogene.

Additional gene information for EBLN3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EBLN3P Gene

Genomics for EBLN3P Gene

Regulatory Elements for EBLN3P Gene

Enhancers for EBLN3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H037079 1.1 ENCODE 0.7 +0.3 310 2 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 SLC30A9 ZNF207 ZNF143 SP3 ZCCHC7 EXOSC3 TRMT10B HMGB3P24 DCAF10 EBLN3P LOC105376034
GH09H037104 0.8 ENCODE 0.3 +24.9 24932 1 LEF1 NFRKB BACH1 ZMYM3 FOSL1 MTA3 ZNF316 FOXK2 ZSCAN5C FOS PAX5 LOC105376034 EBLN3P
GH09H037114 0.5 dbSUPER 0.3 +35.0 35027 1 ZNF555 CEBPB ZNF518A RNF38 LOC105376034 EBLN3P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EBLN3P on UCSC Golden Path with GeneCards custom track

Promoters for EBLN3P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000234832 343 1601 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 SLC30A9 ZNF143 SP3 SP5

Genomic Location for EBLN3P Gene

Chromosome:
9
Start:
37,079,857 bp from pter
End:
37,090,507 bp from pter
Size:
10,651 bases
Orientation:
Plus strand

Genomic View for EBLN3P Gene

Genes around EBLN3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EBLN3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EBLN3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EBLN3P Gene

Proteins for EBLN3P Gene

Post-translational modifications for EBLN3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for EBLN3P Gene

Domains & Families for EBLN3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EBLN3P Gene

Function for EBLN3P Gene

Phenotypes From GWAS Catalog for EBLN3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EBLN3P Gene

Localization for EBLN3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EBLN3P Gene

Pathways & Interactions for EBLN3P Gene

SuperPathways for EBLN3P Gene

No Data Available

Interacting Proteins for EBLN3P Gene

Gene Ontology (GO) - Biological Process for EBLN3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EBLN3P Gene

Drugs & Compounds for EBLN3P Gene

No Compound Related Data Available

Transcripts for EBLN3P Gene

mRNA/cDNA for EBLN3P Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EBLN3P Gene

No ASD Table

Relevant External Links for EBLN3P Gene

GeneLoc Exon Structure for
EBLN3P
ECgene alternative splicing isoforms for
EBLN3P

Expression for EBLN3P Gene

NURSA nuclear receptor signaling pathways regulating expression of EBLN3P Gene:

EBLN3P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EBLN3P Gene

Orthologs for EBLN3P Gene

Evolution for EBLN3P Gene

ENSEMBL:
Gene Tree for EBLN3P (if available)
TreeFam:
Gene Tree for EBLN3P (if available)

No data available for Orthologs for EBLN3P Gene

Paralogs for EBLN3P Gene

No data available for Paralogs for EBLN3P Gene

Variants for EBLN3P Gene

Sequence variations from dbSNP and Humsavar for EBLN3P Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000002106 -- 37,080,474(+) GCCGC(A/C)GTGGA nc-transcript-variant
rs1000473642 -- 37,085,826(+) AACAG(C/T)TTCCC intron-variant
rs1000908886 -- 37,080,573(+) AGAGC(C/T)GCCGG intron-variant
rs1001059012 -- 37,081,580(+) GGGCG(C/T)GGTGG intron-variant
rs1001216585 -- 37,088,851(+) TATAC(A/G)TGACA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for EBLN3P Gene

Variant ID Type Subtype PubMed ID
esv2738432 CNV deletion 23290073
esv3620404 CNV gain 21293372
nsv1021813 CNV loss 25217958
nsv1125318 OTHER inversion 24896259
nsv466390 CNV loss 19166990
nsv614215 CNV loss 21841781
nsv6533 CNV insertion 18451855
nsv818701 CNV loss 17921354
nsv972668 CNV duplication 23825009

Relevant External Links for EBLN3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EBLN3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EBLN3P Gene

Disorders for EBLN3P Gene

Relevant External Links for EBLN3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EBLN3P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EBLN3P

No disorders were found for EBLN3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EBLN3P Gene

Publications for EBLN3P Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2016) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for EBLN3P Gene

Sources for EBLN3P Gene

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