Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

EBF2 Gene

protein-coding   GIFtS: 46
GCID: GC08M025757

early B-cell factor 2

 Explore 6 diseases affiliated with
EBF2 via our new
 Human Malady Compendium 
Biological research products
for EBF2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Early B-Cell Factor 21 2 3     OE-32
COE21 2 3     Collier, Olf And EBF 22
EBF-22 3     Metencephalon-Mesencephalnon-Olfactory Transcription Factor 12
FLJ115001     OLF-1/EBF-LIKE 32
O/E-32     Transcription Factor COE22

External Ids:    HGNC: 190901   Entrez Gene: 646412   Ensembl: ENSG000002218187   OMIM: 6099345   UniProtKB: Q9HAK23   

Export aliases for EBF2 gene to outside databases

Previous GC identifers: GC08M025474 GC08M026054 GC08M025723 GC08M024246


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for EBF2:
The protein encoded by this gene belongs to the COE (Collier/Olf/EBF) family of non-basic, helix-loop-helix
transcription factors that have a well conserved DNA binding domain. The COE family proteins play an important role in
variety of developmental processes. Studies in mouse suggest that this gene may be involved in the differentiation of
osteoblasts. (provided by RefSeq, Oct 2011)

UniProtKB/Swiss-Prot: COE2_HUMAN, Q9HAK2
Function: Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn
regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes
variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_167187.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the EBF2 gene promoter:
         NF-YA   FOXO3   NF-YB   CBF-A   CBF-B   FOXO3a   CP1A   MRF-2   NF-Y   CBF(2)   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for EBF2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EBF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p21.2   Ensembl cytogenetic band:  8p21.2   HGNC cytogenetic band: 8p21.1

EBF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EBF2 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M025757:  view genomic region     (about GC identifiers)

Start:
25,699,246 bp from pter      End:
25,902,913 bp from pter
Size:
203,668 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: COE2_HUMAN, Q9HAK2 (See protein sequence)
Recommended Name: Transcription factor COE2  
Size: 575 amino acids; 62650 Da
Subunit: Forms either a homodimer or a heterodimer with a related family member (By similarity)
Subcellular location: Nucleus (Potential)
Sequence caution: Sequence=BAB13843.1; Type=Erroneous initiation;
Secondary accessions: A0PJM4 A6NMF7 Q6DK36 Q6IS86 Q6ISA4

Explore the universe of human proteins at neXtProt for EBF2: NX_Q9HAK2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9HAK2

  • EBF2 Protein expression data from MOPED and PaxDb:    About this image 
    EBF2 Protein Expression
    REFSEQ proteins: NP_073150.2  
    ENSEMBL proteins: 
     ENSP00000430241   ENSP00000386178   ENSP00000437909  

    Human Recombinant Protein Products for EBF2: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: EBF2
    OriGene Custom Protein Services for EBF2 
    GenScript Custom Purified and Recombinant Proteins Services for EBF2
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for EBF2

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    EBF2 for ontologies           About GeneDecksing



    EBF2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    R&D Systems Antibodies for EBF2 (EBF-2)
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for EBF2 
    GenScript Custom Superior Antibodies Services for EBF2
    Abcam antibodies for EBF2 
    Uscn Antibodies for EBF2
    Search ThermoFisher Antibodies for EBF2

    Assay Products for EBF2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for EBF2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for EBF2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    EBF2 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR014756 Ig_E-set
     IPR011598 HLH_dom
     IPR002909 IPT_TIG_rcpt
     IPR018350 Transcription_factor_COE_CS
     IPR013783 Ig-like_fold

    Graphical View of Domain Structure for InterPro Entry Q9HAK2

    ProtoNet protein and cluster: Q9HAK2

    3 Blocks protein families:
    IPB001092 Basic helix-loop-helix dimerization domain bHLH
    IPB002909 Cell surface receptor IPT/TIG
    IPB003523 Transcription factor COE


    UniProtKB/Swiss-Prot: COE2_HUMAN, Q9HAK2
    Similarity: Belongs to the COE family
    Similarity: Contains 1 IPT/TIG domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: COE2_HUMAN, Q9HAK2
    Function: Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn
    regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes
    variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity)

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding ----
    GO:0046872metal ion binding IEA--
    GO:0046983protein dimerization activity IEA--
         
    EBF2 for ontologies           About GeneDecksing


    Phenotypes:
         14 MGI mutant phenotypes (inferred from 8 alleles(MGI details for Ebf2):
     adipose tissue  behavior/neurological  cellular  craniofacial  endocrine/exocrine gland 
     growth/size  limbs/digits/tail  mortality/aging  nervous system  normal 
     reproductive system  respiratory system  skeleton  taste/olfaction 

    EBF2 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for EBF2: Ebf2tm1Ddr Ebf2tm1Ggc
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for EBF2 

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat EBF2
    8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate EBF2 (see all 24):
    hsa-miR-3685 hsa-miR-3200-5p hsa-miR-520f hsa-miR-1263 hsa-miR-376b hsa-miR-520d-5p hsa-miR-10b hsa-miR-488
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EBF2 (see all 7)
    OriGene shRNA RFP: EBF2
    OriGene siRNA: EBF2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EBF2
    Sirion Biotech Custom design and validation of potent shRNA sequences against EBF2 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for EBF2
    Sirion Biotech Customized adenovirus for overexpression of EBF2 
    Sirion Biotech Customized adenovirus for potent knockdown of EBF2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: EBF2 (NM_004599)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for EBF2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EBF2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for EBF2
    Search LifeMap BioReagents cell lines for EBF2
    Sirion Biotech Customized stable knockdown cell line services for EBF2 
    Sirion Biotech Customized inducible knockdown cell line services for EBF2
    Sirion Biotech Customized stable overexpressing cell line services for EBF2
    Sirion Biotech Customized inducible overexpressing cell line services for EBF2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EBF2


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for EBF2

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    2 Interacting proteins for EBF2 (Q9HAK23 ENSP000003861784) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ZNF423Q2M1K93, ENSP000002623834I2D: score=1 STRING: ENSP00000262383
    EBF4Q9BQW33I2D: score=1 
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent ----
    GO:0007275multicellular organismal development IEA--
    GO:0045893positive regulation of transcription, DNA-dependent IEA--

    EBF2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for EBF2
    Search CenterWatch for drugs/clinical trials and news about EBF2 / COE2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for EBF2 gene: 
    NM_022659.3  

    Unigene Cluster for EBF2:

    Early B-cell factor 2
    Hs.491292  [show with all ESTs]
    Unigene Representative Sequence: NM_022659
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000520164(uc010lug.2 uc003xes.2) ENST00000408929 ENST00000517825(uc003xet.2)
    ENST00000535548

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat EBF2
    8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate EBF2 (see all 24):
    hsa-miR-3685 hsa-miR-3200-5p hsa-miR-520f hsa-miR-1263 hsa-miR-376b hsa-miR-520d-5p hsa-miR-10b hsa-miR-488
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EBF2 (see all 7)
    OriGene shRNA RFP: EBF2
    OriGene siRNA: EBF2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EBF2
    Sirion Biotech Custom design and validation of potent shRNA sequences against EBF2 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: EBF2 (NM_004599)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for EBF2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EBF2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EBF2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat EBF2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EBF2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EBF2

    Additional cDNA sequence: 

    AK001144.1 AK021562.1 AK093878.1 AK304372.1 BC069665.1 BC069726.1 BC069747.1 BC069768.1 
    BC074794.2 BC113478.1 BC113504.1 BC137106.1 BC137107.1 

    3 DOTS entries:

    DT.75105086  DT.99941220  DT.70102522 

    24/30 AceView cDNA sequences (see all 30):

    BC069726 AK021562 AI457889 BC074794 BX282733 AU117744 BC069768 NM_022659 
    BQ878633 AY700779 BI488508 AI016316 BC069747 AA911958 AI200996 AL706446 
    BC069665 BQ889735 AK093878 AA311763 W92336 D62112 AI744592 AU144494 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    EBF2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTTTAAAAAC
    EBF2 Expression
    About this image

    EBF2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeGanglion Cell LayerImmature Ganglion CellsGanglion, Retina
    EyeInner Nuclear LayerCone Bipolar Precursor CellsBipolar, Retina
    KidneyMetanephric MesenchymeMetanephric Mesenchyme CellsKidney
    HeartLeft VentricleHeart
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    PureStem™ progenitor EN2 (Embryonic Progenitor Cell)

    See EBF2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for EBF2

    SOURCE GeneReport for Unigene cluster: Hs.491292
        SABiosciences Custom PCR Arrays for EBF2
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EBF2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat EBF2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EBF2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EBF2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EBF2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for EBF2 gene from 5/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves EBF21 early B-cell factor 2 84.06(n)
    98.43(a)
      395176  NM_001164536.1  NP_001158008.1 
    lizard
    (Anolis carolinensis)
    Reptilia EBF26
    EBF46
    (see all 4)
    --
    96(a)
    92(a)
    (see all 4)
    1 ↔ many
    possible ortholog
    (see all 4)
    GL343445.1(672334-701738)
    GL344110.1(4004-42082)
    zebrafish
    (Danio rerio)
    Actinopterygii coe21 coe2 71.01(n)
    82.22(a)
      30692  NM_131418.1  NP_571493.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta kn6
    knot
    49(a)
    1 → many
    2R(10660152-10694566)
    worm
    (Caenorhabditis elegans)
    Secernentea unc-36
    Transcription factor unc-3
    48(a)
    1 → many
    X(14773297-14783495)


    ENSEMBL Gene Tree for EBF2 (if available)
    TreeFam Gene Tree for EBF2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for EBF2 gene
    EBF32  EBF42  EBF12  
    4 SIMAP similar genes for EBF2 using alignment to 5 protein entries:     COE2_HUMAN (see all proteins):
    DKFZp667I0324    EBF3    EBF1    EBF4

    EBF2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3813 NCBI SNPs in EBF2 are shown (see all 3813    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs170544251,2
    C,F,H--24243504(+) CTATCG/ATCTGC 1 -- ds50019Minor allele frequency- A:0.02NA NS EA CSA WA 680
    rs357176401,2
    C--24243768(+) ATGGAA/-TATAT 1 -- ds50011Minor allele frequency- -:0.00NA 2
    rs117847451,2
    H--24243953(+) AAAAAA/TAAAAA 1 -- ds50010--------
    rs117840131,2
    H--24243954(+) AAAATA/TAAAAA 1 -- ds50010--------
    rs286845241,2
    C--24243962(+) AAATAA/GAAAGC 1 -- ds50012Minor allele frequency- G:0.15WA 120
    rs1128611051,2
    --24244695(+) TAAAAG/ACAATG 1 -- ut312Minor allele frequency- A:0.04CSA WA 120
    rs789187031,2
    C,F--24244882(+) TTGGCG/ACTTTA 1 -- ut311Minor allele frequency- A:0.06EA 120
    rs572057701,2
    C--24245640(+) TCTAAA/CGAGTC 1 -- ut312Minor allele frequency- C:0.15WA 120
    rs100917651,2
    C,F--24245869(+) ACATGG/AGAATT 1 -- ut311Minor allele frequency- A:0.07WA 118
    rs101075741,2
    C,F--24246262(+) TACACA/Ctttat 1 -- ut311Minor allele frequency- C:0.07WA 118

    HapMap Linkage Disequilibrium report for EBF2 (25699246 - 25902913 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for EBF2
         3 CNVs: 100301 7679 2748

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing EBF2
    DNA2.0 Custom Variant and Variant Library Synthesis for EBF2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    EBF2 for disorders           About GeneDecksing

    OMIM gene information: 609934    OMIM disorders: --

    6 diseases for EBF2:    About MalaCards
    motor neuritis    kallmann syndrome    hypogonadotropism    hypogonadism
    osteosarcoma    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: EBF2 (5 documents)

    Export disorders for EBF2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for EBF2 gene, integrated from 9 sources (see all 16):
    (articles sorted by number of sources associating them with EBF2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)1, 2 Nusbaum C....Lander E.S. (2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The characterization of the Olf-1/EBF-like HLH transcription factor family: implications in olfactory gene regulation and neuronal development. (PubMed id 9151732)1, 3 Wang S.S....Reed R.R. (1997)
    5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    6. A large-scale candidate gene association study of age at menarche and age at natural menopause. (PubMed id 20734064)1 He C....Hunter D.J. (2010)
    7. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
    8. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
    9. Profiling of chemonaive osteosarcoma and paired-norma l cells identifies EBF2 as a mediator of osteoprotegerin inhibition to tumor ne crosis factor-related apoptosis-inducing ligand-induced apoptosis. (PubMed id 19671856)1 PatiA+o-GarcA-a A....Lecanda F. (2009)
    10. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PubMed id 16368877)1 Choy K.W....Pang C.P. (2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 64641 HGNC: 19090 AceView: EBF2 Ensembl:ENSG00000221818 euGenes: HUgn64641
    ECgene: EBF2 H-InvDB: EBF2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for EBF2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for EBF2 gene:
    Search GeneIP for patents involving EBF2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for EBF2 (EBF-2)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for EBF2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EBF2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for EBF2  
     OriGene Protein Over-expression Lysate for EBF2   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for EBF2   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for EBF2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for EBF2   OriGene Custom Protein Services for EBF2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat EBF2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing EBF2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EBF2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat EBF2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EBF2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EBF2
     GenScript Custom Purified and Recombinant Proteins Services for EBF2 GenScript cDNA clones with any tag delivered in your preferred vector for EBF2
     GenScript Custom Assay Services for EBF2 GenScript Custom Superior Antibodies Services for EBF2
     GenScript Custom overexpressing Cell Line Services for EBF2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in EBF2 promoter
     Search Chromatin IP Primers for EBF2
     RT2 qPCR Primer Assay in human, mouse, rat EBF2
     Search GNC Networks for EBF2
     SABiosciences Custom PCR Arrays for EBF2
     Search Tocris compounds for EBF2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Biologicals
     Novus Tissue Slides
     Antibodies for EBF2
     See all of Abcam's Antibodies, Kits and Proteins for EBF2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     EBF2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for EBF2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EBF2
     Browse SwitchGear 3'UTR luciferase reporter plasmids for EBF2
     Browse SwitchGear Promoter luciferase reporter plasmids for EBF2
     Search ThermoFisher Antibodies for EBF2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat EBF2
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for EBF2
    Sirion Biotech Customized:
     stable knockdown cell line services for EBF2
     inducible knockdown cell line services for EBF2
     design and validation of potent shRNA sequences against EBF2
     adenovirus for potent knockdown of EBF2
     adenovirus for overexpression of EBF2
     stable overexpressing cell line services for EBF2
     inducible overexpressing cell line services for EBF2
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      EBF2 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 106 solr: 1.4