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E4F1 Gene

protein-coding   GIFtS: 57

GC16P002213
E4F transcription factor 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
E4F 1, 2, 3, 5
EC 6.3.2.- 3
MGC99614 2
p120E4F 2, 3
p50E4F 3
Descriptions
E4F transcription factor 1 2, 3
Putative E3 ubiquitin-protein ligase E4F1 3
Transcription factor E4F 3
External Ids
HGNC: 31211
Entrez Gene: 18772
UniProtKB: Q66K893
Ensembl: ENSG000001679677
Search outside databases for aliases for E4F1 gene

Previous GC identifers: GC16M002500 GC16P002299

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for E4F1:
The zinc finger protein encoded by this gene is one of several cellular transcription factors whose
DNA-binding activities are regulated through the action of adenovirus E1A. A 50-kDa amino-terminal
product is generated from the full-length protein through proteolytic cleavage. The protein is
differentially regulated by E1A-induced phosphorylation. The full-length gene product represses
transcription from the E4 promoter in the absence of E1A, while the 50-kDa form acts as a
transcriptional activator in its presence. [provided by RefSeq]

UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89
Function: Identified as a cellular target of the adenoviral oncoprotein E1A, it is required for
both transcriptional activation and repression of viral genes

Gene Wiki entry for E4F1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the E4F1 gene  

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

E4F1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P002213:     (about GC identifiers)

Start:
2,213,568 bp from pter
End:
2,225,744 bp from pter
Size:
12,177 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000016.8  NT_037887.4  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89 (See protein sequence)
Recommended Name: Transcription factor E4F1  
Size: 784 amino acids; 83477 Da
Subunit: Homodimer; binds DNA as a dimer. Forms a complex with CDKN2A and TP53. Interactions with
TP53, RB1, ANP32A, BMI1 and FHL2 regulate E4F1 activity. Interacts with HDAC1, HMGA2 and RASSF1.
Interacts with HBV protein X
Subcellular location: Nucleus, nucleoplasm. Cytoplasm. Note=A small fraction is detected in the
cytoplasm. Excluded from the nucleolus where it is targeted upon CDKN2A overexpression. Localizes
to the mitotic spindle during embryogenesis (By similarity)
Developmental stage: Expressed in a variety of fetal tissues
Secondary accessions: A8K2R4 O00146

Post-translational modifications:

  • Proteolytic cleavage produces a 50 kDa N-terminal peptide (p50E4F) which has a DNA-binding activity
    and activates transcription in presence of the adenoviral E1A protein. The major full length
    protein (p120E4F) functions as a repressor of transcription1
  • Phosphorylated; p120E4F and p50E4F are both phosphorylated. Phosphorylation is cell cycle-dependent
    and differentially regulates DNA-binding activity and function of both forms1
  • May be sumoylated by UBE2I upon interaction with CDKN2A1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_004415.2  

    ENSEMBL proteins: 
    ENSP00000301727 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (E4F1)
    Human Recombinant Proteins from Abnova (E4F1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    4 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005634 nucleus IEA--
    GO:0005737 cytoplasm IEA--
    GO:0005819 spindle IEA--
    About this table

    Antibodies for E4F1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for E4F1
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    Antibodies from Abcam (E4F1), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (E4F1)
    Novus Biologicals Antibodies for E4F1

    Assays for E4F1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2


       GeneDecks  E4F1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q66K89

    ProtoNet protein and cluster: Q66K89

    UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89
    Similarity: Contains 9 C2H2-type zinc fingers

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (E4F1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (E4F1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004424

                  Applied Biosystems Silencer® siRNAs for E4F1

                  Sigma-Aldrich siRNA for E4F1  
                         Sigma-Aldrich shRNA for E4F1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for E4F1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004424
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004424
                                     untagged cDNA clone in CMV expression vector: NM_004424 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_004424

    UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89
    Function: May function as a transcriptional repressor. May also function as a ubiquitin ligase
    mediating ubiquitination of chromatin-associated TP53. Functions in cell survival and
    proliferation through control of the cell cycle. Functions in the p53 and pRB tumor suppressor
    pathways and regulates the cyclin CCNA2 transcription
    Function: Identified as a cellular target of the adenoviral oncoprotein E1A, it is required for
    both transcriptional activation and repression of viral genes
    Induction: Up-regulated by estrogen
    Enzyme Number (IUBMB): EC 6.3.2.- 

    Genatlas biochemistry entry for E4F1:
    transcription factor E4F1,adenovirus EIA regulated,with low spliced isoforms,one 120kDa)
    upregulated,50kDa,down-regulated

    4 MGI mutant phenotypes (inferred from 1 allele(MGI details for E4f1):

    cellularembryogenesisgrowth/sizelethality-prenatal/perinatal

    5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity TAS9121437 10869426
    GO:0003713 transcription coactivator activity TAS9121437
    GO:0003714 transcription corepressor activity TAS10869426
    GO:0005515 protein binding IPI14729613
    GO:0008270 zinc ion binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89
    Pathway: Protein modification; protein ubiquitination

     Gene Network CentralTM Interacting Genes and Proteins Network for  E4F1 


    5/13 Interacting proteins for E4F1 (Q66K891, 2 ENSP000003017273) via UniProtKB, MINT, and/or STRING (see all 13 )

    InteractantInteraction Details
    GeneCardExternal ID(s)
    ANP32AP396872, ENSP000002679183MINT-4968493 MINT-4975442 MINT-4979091 STRING (score=.963)
    RASSF1Q9NS23-21, ENSP000003523233EBI-1227043, EBI-438698 STRING (score=.953)
    HDAC1Q135472MINT-6628981 MINT-6628988 MINT-6628993
    EHMT2Q96KQ72MINT-67755
    ENSG00000206376Q96KQ72MINT-67755
    About this table

    5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006260 DNA replication IEA--
    GO:0006350 transcription IEA--
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0007049 cell cycle IEA--
    GO:0007067 mitosis IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for E4F1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (E4F1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (E4F1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004424

                  Sigma-Aldrich siRNA for E4F1  
                         Sigma-Aldrich shRNA for E4F1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_004424  

    REFSEQ mRNAs for E4F1 gene: 

    NM_004424.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_004424  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004424
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004424
                                     untagged cDNA clone in CMV expression vector: NM_004424 

    Additional cDNA sequence: BC001713.1 

    10 DOTS entries:

    DT.100778478  DT.97815181  DT.113646  DT.120702796  DT.99967923  DT.120702790  DT.92430065  DT.100778477 
    DT.431106  DT.120702799 

    24/153 AceView cDNA sequences (see all 153 ):

    CA405900 BM676507 NM_001374 BI223566 BC080524 AI675620 BC063710 CA422408 
    BU957083 Z38690 AK098028 BC014068 BM713890 BU501086 BC035205 BX283985 
    BU539326 AY298957 AW515664 BX284025 BM796095 AI420452 CA488104 BG028095 

    highest scoring ESTs for E4F1:

    AI671641 AA146592 AA149892 AA149939 AA160732 AA191608 AA326866 AA548983 AA554733 AA600759 

    Unigene Clusters for E4F1:

    E4F transcription factor 1
    Hs.513268  [show with all ESTs], Hs.615283
    Unigene Representative Sequences: AB209008, BC001713


    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for E4F1 (see all 6 )

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
    SP1:                                                                                                                  
    SP2:                                                                                                                  
    SP3:              -                                                                                                   
    SP4:                                                                                                                  
    SP5:                                                                                                                  

    About this scheme

    ECgene alternative splicing isoforms for E4F1

    1 Ensembl transcript including schematic representation:
    ENST00000301727  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    E4F1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for E4F1

    1 / 2 / 3

    3 probe-sets matching E4F1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    78541_at2, 3 U95-E 1 1.00 1.00 1.00 1.00 AI671641 0.80 1.00 0.91 1

    218524_at2, 3 U133-A 1 1.00 1.00 -- -- NM_004424 0.60 0.83 0.73 1

    218524_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TTTTATTGTA

    SOURCE GeneReport for Unigene clusters: Hs.513268 Hs.615283

    UniProtKB/Swiss-Prot: E4F1_HUMAN, Q66K89
    Tissue specificity: Ubiquitously expressed

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for E4F1 gene from 5/7 species (see all 7 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    E4F11   -- E4F transcription factor 1 90.64(n)
    87.63(a)
    454356  XM_511205.2  XP_511205.2 
    cow
    (Bos taurus)
    E4F11   -- E4F transcription factor 1 85.98(n)
    86.72(a)
    515997  XM_594119.3  XP_594119.3 
    rat
    (Rattus norvegicus)
    E4f11   -- E4F transcription factor 1 82.38(n)
    82.79(a)
    681359  XM_001061399.1  XP_001061399.1 
    mouse
    (Mus musculus)
    E4f11, 5 17 (12.00 cM)5
    E4F transcription factor 11, 5 85.85(n)1
    88.72(a)1
    135601  NM_007893.31  NP_031919.21 
     AF1269675  AK0332855  (see all 15)
    chicken
    (Gallus gallus)
    E4F11   -- E4F transcription factor 1 68.51(n)
    70.17(a)
    416560  XM_414860.2  XP_414860.2 
    About this table        Species with no ortholog for E4F1

    ENSEMBL Gene Tree for E4F1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/59 NCBI SNPs in E4F1 are shown (see all 59 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 40)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 16 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs268391,2
    C2222257(+) CCCCCA/GCCAGC 1 R/H mis1 ese33Minor allele frequency- G:0.02EA NA 58
    --
    rs116410961,2
    C2211672(+) attacA/Gggagt 1 -- ng510--------
    --
    rs309891,2
    C2211607(-) accaaC/Gcaggc 1 -- ng510--------
    rs22410701,2
    C,F2218510(+) ACAGCG/ATTGCT 1 A/A syn15Minor allele frequency- A:0.05EA NA 1840
    rs273821,2
    A,C,F,H2220278(+) TCCCTG/AATGTG 1 -- int18Minor allele frequency- A:0.44MN NA EU EA WA 738
    rs309881,2
    A,C,F,H2214301(-) AAAGAG/ACTAGA 1 -- int18Minor allele frequency- A:0.48EU EA WA 840
    rs268371,2
    A,C,F2220319(+) GGGCAA/GGCTCT 1 -- int11Minor allele frequency- G:0.14MN 184
    --
    rs30962781,2
    A,C2216090(-) CAAGGC/TGGAGT 1 -- int10--------
    rs116480281,2
    A,C2221343(+) GGCCTC/TTGTCC 1 -- int10--------
    rs277091,2
    F2221830(+) CGGCTG/ATCTCT 1 -- int11Minor allele frequency- A:0.38MN 184
    About this table

    HapMap Linkage Disequilibrium images for E4F1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 603022

    1 Novoseek disease relationship for E4F1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0.00 2 14729613 (1), 12446718 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/29 PubMed articles for E4F1 gene (see all 29 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1877 HGNC: 3121 AceView: DNASE1L2andE4F1 Ensembl:ENSG00000167967 euGenes: HUgn1877
    ECgene: E4F1 H-InvDB: E4F1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for E4F1 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for E4F1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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