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Aliases & Descriptions for E2F6
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| E2F-6 1, 2, 3 | | MGC111545 2 |
| | | Descriptions |
|---|
| E2F transcription factor 6 2 | | E2F transcription factor 6, isoform 1 2 |
|
| | Search outside databases for aliases for E2F6 genePrevious GC identifers: GC02M011370 GC02M011636 GC02M011607 |
Summaries for E2F6(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for E2F6: This gene encodes a member of the E2F transcription factor protein family. E2F family members play a crucial role in control of the cell cycle and of the action of tumor suppressor proteins. They are also a target of the transforming proteins of small DNA tumor viruses. Many E2F proteins contain several evolutionarily conserved domains: a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. The encoded protein of this gene is atypical because it lacks the transactivation and tumor suppressor protein association domains. It contains a modular suppression domain and is an inhibitor of E2F-dependent transcription. The protein is part of a multimeric protein complex that contains a histone methyltransferase and the transcription factors Mga and Max. Multiple transcript variants have been reported for this gene, but it has not been clearly demonstrated that they encode valid isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: E2F6_HUMAN, O75461Function: Inhibitor of E2F-dependent transcription. Binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3'. Has a preference for the 5'-TTTCCCGC-3' E2F recognition site. E2F-6 lacks the transcriptional activation and pocket protein binding domains. Appears to regulate a subset of E2F-dependent genes whose products are required for entry into the cell cycle but not for normal cell cycle progression. May silence expression via the recruitment of a chromatin remodeling complex containing histone H3-K9 methyltransferase activity. Overexpression delays the exit of cells from the S-phase |
Genomic Location for E2F6
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the E2F6 gene 
Entrez Gene cytogenetic band: 2p25.1 Ensembl cytogenetic band: 2p25.1 HGNC cytogenetic band: 2p25.1E2F6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M011536:
(about GC identifiers)
Start:
|
11,501,952 bp from pter |
End:
|
11,523,748 bp from pter |
Size:
|
21,797 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005334.15
| Proteins for E2F6
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: E2F6_HUMAN, O75461 (See
protein sequence)Recommended Name: Transcription factor E2F6 Size: 281 amino acids; 31844 Da
Subunit: Component of the DRTF1/E2F transcription factor complex. Forms heterodimers with DP family members. Part of the E2F6.com-1 complex in G0 phase composed of E2F6, MGA, MAX, TFDP1, CBX3, BAT8, EUHMTASE1, RING1, RNF2, MBLR, L3MBTL2 and YAF2
Subcellular location: Nucleus
Secondary accessions: A8K2Z8 O60544 Q53QY9 Q7Z2H6Alternative splicing: 2 isoforms: O75461-1 O75461-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_937987.2
ENSEMBL proteins: ENSP00000355036 ENSP00000302159 ENSP00000370936
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- | | GO:0005667 | transcription factor complex |
IEA | -- | About this table
Antibodies for E2F6: Assays for E2F6: | Protein
Domains/ Families for E2F6(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O75461
ProtoNet protein and cluster: O75461 1 Blocks protein family: IPB003316 Transcription factor E2F/dimerisation partner (TDP)
UniProtKB/Swiss-Prot: E2F6_HUMAN, O75461Similarity: Belongs to the E2F/DP family | Gene Function for E2F6
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 10): NM_001952
Applied Biosystems Silencer® siRNAs for E2F6
Sigma-Aldrich siRNA for E2F6  Sigma-Aldrich shRNA Panels and shRNA for E2F6  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_198256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_198256                                  untagged cDNA clones in CMV expression vector (see all 6): NM_198256 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_198256
UniProtKB/Swiss-Prot: E2F6_HUMAN, O75461Function: Inhibitor of E2F-dependent transcription. Binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3'. Has a preference for the 5'-TTTCCCGC-3' E2F recognition site. E2F-6 lacks the transcriptional activation and pocket protein binding domains. Appears to regulate a subset of E2F-dependent genes whose products are required for entry into the cell cycle but not for normal cell cycle progression. May silence expression via the recruitment of a chromatin remodeling complex containing histone H3-K9 methyltransferase activity. Overexpression delays the exit of cells from the S-phase12 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for E2f6):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003700 | transcription factor activity |
IEA | -- | | GO:0003714 | transcription corepressor activity |
TAS | 9501179 | About this table | Pathways & Interactions for E2F6
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for E2F6 (Your Favorite Gene powered by Ingenuity) (see all 7
) 
Gene Network CentralTM Interacting Genes and Proteins Network for E2F6 
5/23 Interacting proteins for E2F6 (ENSP000003021593 O754612) via UniProtKB, MINT, and/or STRING (see all 23
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000083 | regulation of transcription of G1/S-phase of mitotic cell cycle |
IEA | -- | | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
TAS | 9501179 | | GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0007049 | cell cycle |
IEA | -- | About this table
|
Drugs & Compounds for E2F6(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for E2F6
|
Transcripts for E2F6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 10): NM_001952
Sigma-Aldrich siRNA for E2F6  Sigma-Aldrich shRNA Panels and shRNA for E2F6  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_198256 REFSEQ mRNAs for E2F6 gene: NM_198256.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_198256               OriGene GFP tagged cDNA clone in CMV expression vector: NM_198256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_198256                                  untagged cDNA clones in CMV expression vector (see all 6): NM_198256  Additional cDNA sequence: AF041381.1 AF059292.1 AF088059.1 AK096197.1 AK223159.1 AK223407.1 AK290413.1 AK293504.1 AY083996.1 AY551346.1 AY551347.1 AY551348.1 AY551349.1 AY551350.1 AY551351.1 BC008348.1 BC062610.1 BC107740.1 CR603243.1 CR607422.1 CR621731.1 DQ786210.1 16 DOTS entries: DT.452737 DT.91728817 DT.101982840 DT.91728798 DT.100799188 DT.100799187 DT.100804147 DT.120668502 DT.120999275 DT.100799184 DT.120999269 DT.91728816 DT.91902996 DT.100701172 DT.91728799 DT.95168245 24/171 AceView cDNA sequences (see all 171
):AU132447 NM_198257 AI334142 NM_198258 AY551351 BI768018 CR607422 BU076470 BI819207 NM_212540 AA770486 AI435088 CR621731 NM_198256 AI090043 BE257158 AF088059 AW025791 BF197262 BM972996 AI265956 BI772069 BU617283 AA724389
highest scoring ESTs for E2F6:AF041381 AA127210 AF059292 AK096197 AU131585 AU132447 AY083996 AY551347 AY551348 AY551349 Unigene Cluster for E2F6: E2F transcription factor 6 Hs.603093 [show with all ESTs]Unigene Representative Sequence: NM_198256
GeneLoc Exon Structure
5/15 Alternative Splicing Database (ASD) splice patterns (SP) for E2F6 (see all 15
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8 | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | |
| SP1: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for E2F6
3 Ensembl transcripts including schematic representations: ENST00000362009
ENST00000307236
ENST00000381525
|
Expression for E2F6
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| E2F6 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for E2F6
1 / 2 / 3 4 probe-sets matching E2F6 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCTGGCCCTT
SOURCE GeneReport for Unigene cluster: Hs.603093
Expression variation in blood from EXPOLDB for E2F6 UniProtKB/Swiss-Prot: E2F6_HUMAN, O75461Tissue specificity: Expressed in all tissues examined. Highest levels in placenta, skeletal muscle, heart, ovary, kidney, small intestine and spleen |
Orthologs for E2F6
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for E2F6 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for E2F6
ENSEMBL Gene Tree for E2F6 | Paralogs for E2F6(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for E2F6 gene
- E2F52 E2F42
Pseudogenes
- 3 related pseudogenes
|
SNPs/Variants for E2F6(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for E2F6 (up to first 250kb)
|
Disorders & Mutations for E2F6
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602944
|
Medical News for E2F6(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for E2F6 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/27 PubMed articles for E2F6 gene (see all 27
):- E2F-6, a member of the E2F family that can behave as a transcriptional repressor. (PubMed id 9501179)2, 3, 4 Trimarchi J.M....Lees J.A. (1998)
- E2F-6: a novel member of the E2F family is an inhibitor of E2F- dependent transcription. (PubMed id 9704927)1, 3, 4 Cartwright P.... Helin K. (1998)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)3, 4 Hillier L.W....Wilson R.K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- A complex with chromatin modifiers that occupies E2F- and Myc-responsive genes in G0 cells. (PubMed id 12004135)3, 4 Ogawa H....Nakatani Y. (2002)
- Unusual proliferation arrest and transcriptional control properties of a newly discovered E2F family member, E2F-6. (PubMed id 9689056)3, 4 Gaubatz S.... Livingston D.M. (1998)
- E2F6 negatively regulates BRCA1 in human cancer cells without methylation of histone H3 on lysine 9. (PubMed id 12909625)1, 3 Oberley M.J....Farnham P.J. (2003)
- A role for E2F6 in distinguishing G1/S- and G2/M-specific transcription. (PubMed id 15574595)1, 3 Giangrande P.H....Nevins J.R. (2004)
- Human E2F6 is alternatively spliced to generate multiple protein isoforms. (PubMed id 15081404)1, 3 Kherrouche Z.... Monte D. (2004)
|
Search for E2F6
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing E2F6
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing E2F6
(According to HUGE)
About This Section
| -- |
Specialized Databases showing E2F6(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for E2F6(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for E2F6:

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Incremental update: 13 Oct 2009
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