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E2F5 Gene

protein-coding   GIFtS: 60

GC08P086276
E2F transcription factor 5, p130-binding
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
E2F-5 2, 3
Descriptions
E2F transcription factor 5 2
E2F transcription factor 5, p130-binding 2
External Ids
HGNC: 31191
Entrez Gene: 18752
UniProtKB: Q153293
Ensembl: ENSG000001337407
Search outside databases for aliases for E2F5 gene

Previous GC identifers: GC08P084913 GC08P086046 GC08P085869 GC08P086164

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for E2F5:
The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F
family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins
and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins
contain several evolutionarily conserved domains that are present in most members of the family.
These domains include a DNA binding domain, a dimerization domain which determines interaction
with the differentiation regulated transcription factor proteins (DP), a transactivation domain
enriched in acidic amino acids, and a tumor suppressor protein association domain which is
embedded within the transactivation domain. This protein is differentially phosphorylated and is
expressed in a wide variety of human tissues. It has higher identity to E2F4 than to other family
members. Both this protein and E2F4 interact with tumor suppressor proteins p130 and p107, but not
with pRB. Alternative splicing results in multiple variants encoding different isoforms. [provided
by RefSeq]

UniProtKB/Swiss-Prot: E2F5_HUMAN, Q15329
Function: Transcriptional activator that binds to E2F sites, these sites are present in the
promoter of many genes whose products are involved in cell proliferation. May mediate growth
factor-initiated signal transduction. It is likely involved in the early responses of resting
cells to growth factor stimulation

Gene Wiki entry for E2F5

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the E2F5 gene  

Entrez Gene cytogenetic band: 8q21.2   Ensembl cytogenetic band:  8q21.2   HGNC cytogenetic band: 8q21.2

E2F5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P086276:     (about GC identifiers)

Start:
86,276,871 bp from pter
End:
86,314,005 bp from pter
Size:
37,135 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000008.9  NT_008183.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: E2F5_HUMAN, Q15329 (See protein sequence)
Recommended Name: Transcription factor E2F5  
Size: 346 amino acids; 37610 Da
Subunit: Component of the DRTF1/E2F transcription factor complex. Binds cooperatively with DP-1 to
E2F sites. Interaction with retinoblastoma protein RB1 or proteins RBL1 and RBL2 inhibits the E2F
transactivation domain. Component of the DREAM complex (also named LINC complex) at least composed
of E2F4, E2F5, LIN9, LIN37, LIN52, LIN54, MYBL1, MYBL2, RBL1, RBL2, RBBP4, TFDP1 and TFDP2. The
complex exists in quiescent cells where it represses cell cycle-dependent genes. It dissociates in
S phase when LIN9, LIN37, LIN52 and LIN54 form a subcomplex that binds to MYBL2
Subcellular location: Nucleus
Secondary accessions: Q16601 Q92756

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_001077057.1  NP_001077058.1  NP_001942.2  


    ENSEMBL proteins: 
    ENSP00000256117 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (E2F5)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    4 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    GO:0005654 nucleoplasm EXP9190208
    GO:0005667 transcription factor complex IEA--
    GO:0005737 cytoplasm IEA--
    About this table

    Antibodies for E2F5: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for E2F5
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (E2F5), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for E2F5

    Assays for E2F5: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR003316 E2F_TDP
     IPR011991 Wing_hlx_DNA_bd
     IPR015633 E2F


       GeneDecks  E2F5 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q15329

    ProtoNet protein and cluster: Q15329

    1 Blocks protein family: IPB003316 Transcription factor E2F/dimerisation partner (TDP)

    UniProtKB/Swiss-Prot: E2F5_HUMAN, Q15329
    Similarity: Belongs to the E2F/DP family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (E2F5)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (E2F5)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001083588

                  Applied Biosystems Silencer® siRNAs for E2F5

                  Sigma-Aldrich siRNA for E2F5  
                         Sigma-Aldrich shRNA Panels and shRNA for E2F5  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001083588
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001083588
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001083588 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001951

    UniProtKB/Swiss-Prot: E2F5_HUMAN, Q15329
    Function: Transcriptional activator that binds to E2F sites, these sites are present in the
    promoter of many genes whose products are involved in cell proliferation. May mediate growth
    factor-initiated signal transduction. It is likely involved in the early responses of resting
    cells to growth factor stimulation

    10 MGI mutant phenotypes (inferred from 1 allele(MGI details for E2f5):

    behavior/neurologicalcellularcraniofacialhomeostasis/metabolism
    lethality-prenatal/perinatallife span-post-weaning/agingnervous systemskeletonskin/coat/nails

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity NAS7892279
    GO:0005515 protein binding TAS7760804
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for E2F5
     Cell cycle Cell cycle (generic schema)

       GeneDecks  E2F5 for the pathways selected above  
    About GeneDecksing

    5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for  E2F5  (Your Favorite Gene powered by Ingenuity) (see all 7
     Role of BRCA1 in DNA Damage Response
     Cell Cycle Regulation by BTG Family Proteins
     Cell Cycle: G1/S Checkpoint Regulation
     Glioma Signaling
     Role of CHK Proteins in Cell Cycle Checkpoint Control

       GeneDecks  E2F5 for the pathways selected above  
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    1 Kegg Pathway  (Kegg details for E2F5):
     hsa04350 TGF-beta signaling pathway

       GeneDecks  E2F5 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  E2F5 


    5/28 Interacting proteins for E2F5 (ENSP000002561173) via UniProtKB, MINT, and/or STRING (see all 28 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RBL1ENSP000003627683STRING (score=.999)
    RBL2ENSP000002621333STRING (score=.999)
    TFDP1ENSP000003645193STRING (score=.999)
    RB1ENSP000002671633STRING (score=.996)
    SMAD3ENSP000003329733STRING (score=.995)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006350 transcription IEA--
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0009887 organ morphogenesis IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for E2F5
    1 Novoseek chemical compound relationship for E2F5 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    dihydrofolate 39.05 1 10823896 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (E2F5)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (E2F5)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001083588

                  Sigma-Aldrich siRNA for E2F5  
                         Sigma-Aldrich shRNA Panels and shRNA for E2F5  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001083588  NM_001083589  NM_001951  

    REFSEQ mRNAs for E2F5 gene (3 alternative transcripts): 

    NM_001083588.1   NM_001083589.1   NM_001951.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001083588  NM_001083589  NM_001951  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001083588
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001083588
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001083588 

    Additional cDNA sequence: 

    CR599340.1 CR605094.1 U15642.1 U31556.1 X86097.1 Z78409.1 

    7 DOTS entries:

    DT.91767898  DT.95165122  DT.95257961  DT.305579  DT.100813249  DT.86846772  DT.95165120 

    24/91 AceView cDNA sequences (see all 91 ):

    AA766588 AA748780 BX117249 BM698762 BX091085 BF116070 AA455521 AW051475 
    BG282688 CR605094 AI066452 AA484938 AW589432 AA723164 BU735902 AA991290 
    CR599340 AI740797 X86097 BE878145 AI288540 BF740154 AW027851 Z78409 

    highest scoring ESTs for E2F5:

    U15642 U31556 AA286972 AA455521 AA723164 AA743346 AA766588 AA978108 AA991290 AI066452 

    Unigene Cluster for E2F5:

    E2F transcription factor 5, p130-binding
    Hs.445758  [show with all ESTs]
    Unigene Representative Sequence: X86097


    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for E2F5

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b
    SP1:                                                            
    SP2:                                                            
    SP3:                                                            

    About this scheme

    ECgene alternative splicing isoforms for E2F5

    1 Ensembl transcript including schematic representation:
    ENST00000256117  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    E2F5 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for E2F5

    1 / 2 / 3

    6 probe-sets matching E2F5 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    41275_at2, 3 U95-A 1 1.00 1.00 0.96 1.06 U31556 1.00 1.00 1.00 1
    1044_s_at2, 3 U95-A 1 1.00 1.00 0.92 1.00 U31556 1.00 1.00 1.00 1

    1639_s_at2, 3 U95-A 1 1.00 1.00 0.83 0.77 U15642 1.00 1.00 1.00 1
    66404_at2, 3 U95-C 1 1.00 1.00 0.35 1.19 AA748780 0.60 1.00 0.82 1

    221586_s_at2, 3 U133-A 1 1.00 1.00 -- -- U15642 1.00 1.00 1.00 1

    221586_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  E2F5 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GAAACTTGGG

    SOURCE GeneReport for Unigene cluster: Hs.445758

    Expression variation in blood from EXPOLDB for E2F5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for E2F5 gene from 5/9 species (see all 9 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    E2F51   -- E2F transcription factor 5, p130-binding 89.81(n)
    91.67(a)
    611103  XM_848740.1  XP_853833.1 
    chimpanzee
    (Pan troglodytes)
    E2F51   -- E2F transcription factor 5, p130-binding 99.9(n)
    100(a)
    747256  XM_001169141.1  XP_001169141.1 
    cow
    (Bos taurus)
    E2F51   -- E2F transcription factor 5, p130-binding 90.94(n)
    91.91(a)
    539427  XM_587085.3  XP_587085.3 
    rat
    (Rattus norvegicus)
    E2f51   -- E2F transcription factor 5 88.95(n)
    90.24(a)
    116651  XM_574892.2  XP_574892.1 
    mouse
    (Mus musculus)
    E2f51, 5 35
    E2F transcription factor 51, 5 88.86(n)1
    90.75(a)1
    135591  NM_007892.21  NP_031918.21 
     AK0288565  AK1567605  (see all 10)
    About this table        Species with no ortholog for E2F5

    ENSEMBL Gene Tree for E2F5
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for E2F5 gene
    E2F42  E2F62  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/190 NCBI SNPs in E2F5 are shown (see all 190 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 100)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 8 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs101004421,2
    A,C,F,H86275358(+) ATGTCA/GCTTCA 2 -- ng514Minor allele frequency- G:0.40EU EA WA 416
    rs41508671,2
    A,C,F,H86286794(+) ggttcG/Atttga 3 -- int1 ng5113Minor allele frequency- A:0.42NS EU EA WA NA 1218
    rs41508681,2
    C,F,H86286886(+) cccctG/Actatt 3 -- int1 ng5114Minor allele frequency- A:0.45NS EU EA WA NA 1382
    --
    rs41508621,2
    A,C,F86286041(+) atataT/Cataag 3 -- int1 ng511Minor allele frequency- C:0.35NS 176
    rs41508731,2
    C,F,H86287194(+) GCAGCA/GTAAGT 3 -- int1 ut5119Minor allele frequency- G:0.06NS EU EA WA NA 1506
    rs41508691,2
    C,F,H86286953(+) aggtgT/Ctgcta 3 -- int1 ng515Minor allele frequency- C:0.41NS EU EA WA 578
    --
    rs41508651,2
    C,F86286240(+) atggtG/Atatat 3 -- int1 ng511Minor allele frequency- A:0.42NS 154
    --
    rs78420131,2
    A,C86285270(+) ttggaA/Gaaatg 3 -- ng51 int10--------
    --
    rs78389001,2
    A,C86285501(+) ctataC/Taccca 3 -- int1 ng510--------
    --
    rs41508661,2
    F86286295(+) GTATAT/AATAAG 3 -- int1 ng511Minor allele frequency- A:0.02NS 154
    About this table

    HapMap Linkage Disequilibrium images for E2F5 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600967

    4 Novoseek disease relationships for E2F5 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    retinoblastoma 70.23 1 15548374 (1)
    tumors 24.02 11 10738311 (3), 12368233 (1), 16721044 (1)
    cancer 11.85 3 16721044 (1), 8622649 (1), 19014670 (1)
    breast cancer 0.00 1 10738311 (1)
    About this table

    Human Genome Epidemiology Navigator: E2F5 (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/61 PubMed articles for E2F5 gene (see all 61 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1875 HGNC: 3119 AceView: E2F5 Ensembl:ENSG00000133740 euGenes: HUgn1875
    ECgene: E2F5 H-InvDB: E2F5
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for E2F5 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/e2f5/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for E2F5:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for E2F5 Antibodies for E2F5
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