 |
 | Services
| |
 |
Aliases & Descriptions for E2F4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| E2F transcription factor 4 2 | | E2F transcription factor 4, p107/p130-binding 2 | | p107/p130-binding protein 2 |
|
| | Search outside databases for aliases for E2F4 genePrevious GC identifers: GC16P057920 GC16P067603 GC16P066962 GC16P067002 |
Summaries for E2F4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for E2F4: The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionally conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This protein binds to all three of the tumor suppressor proteins pRB, p107 and p130, but with higher affinity to the last two. It plays an important role in the suppression of proliferation-associated genes, and its gene mutation and increased expression may be associated with human cancer. [provided by RefSeq] UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254Function: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-4 binds with high affinity to RBL1 and RBL2. In some instances, can also bind RB proteinGene Wiki entry for E2F4 |
Genomic Location for E2F4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the E2F4 gene 
Entrez Gene cytogenetic band: 16q21-q22 Ensembl cytogenetic band: 16q22.1 HGNC cytogenetic band: 16q21-q22E2F4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P065783:
(about GC identifiers)
Start:
|
65,783,569 bp from pter |
End:
|
65,790,322 bp from pter |
Size:
|
6,754 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010498.15
| Proteins for E2F4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254 (See
protein sequence)Recommended Name: Transcription factor E2F4 Size: 413 amino acids; 43960 Da
Subunit: Component of the DRTF1/E2F transcription factor complex. Binds cooperatively with DP-1 to E2F sites. The E2F4/DP-1 dimer interacts preferentially with pocket protein RBL1, which inhibits the E2F transactivation domain. Lower affinity interaction has been found with retinoblastoma protein RB1. Interacts with TRRAP, which probably mediates its interaction with histone acetyltransferase complexes, leading to transcription activation. Interacts with HCFC1. Component of the DREAM complex (also named LINC complex) at least composed of E2F4, E2F5, LIN9, LIN37, LIN52, LIN54, MYBL1, MYBL2, RBL1, RBL2, RBBP4, TFDP1 and TFDP2. The complex exists in quiescent cells where it represses cell cycle-dependent genes. It dissociates in S phase when LIN9, LIN37, LIN52 and LIN54 form a subcomplex that binds to MYBL2
Subcellular location: Nucleus
Developmental stage: Present in the growth-arrested state, its abundance does not change significantly as cells move into and through the cell cycle
PDB structures from and Proteopedia :1CF7 (3D)
 
Secondary accessions: A6NGR8 B5BU56 Q12991 Q15328Post-translational modifications:
Differentially phosphorylated in vivo1
REFSEQ proteins: NP_001941.2
ENSEMBL proteins: ENSP00000368686
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: E2F4 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for E2F4: Assays for E2F4: | Protein
Domains/ Families for E2F4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q16254
ProtoNet protein and cluster: Q16254 1 Blocks protein family: IPB003316 Transcription factor E2F/dimerisation partner (TDP)
UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254Similarity: Belongs to the E2F/DP family | Gene Function for E2F4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001950
Applied Biosystems Silencer® siRNAs for E2F4
Sigma-Aldrich siRNA for E2F4  Sigma-Aldrich shRNA Panels and shRNA for E2F4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001950                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001950                                  untagged cDNA clone in CMV expression vector: NM_001950 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001950
UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254Function: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-4 binds with high affinity to RBL1 and RBL2. In some instances, can also bind RB proteinGenatlas biochemistry entry for E2F4:transcription factor E2F4,involved in cell proliferation,controlling genes regulating S phase entry and DNA synthesis15/21 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for E2f4) (see all 21
):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for E2F4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for E2F4 (Your Favorite Gene powered by Ingenuity) (see all 7
) 
Gene Network CentralTM Interacting Genes and Proteins Network for E2F4 
5/67 Interacting proteins for E2F4 (Q162541, 2 ENSP000003686863) via UniProtKB, MINT, and/or STRING (see all 67
)About this table
5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000083 | regulation of transcription of G1/S-phase of mitotic cell cycle |
IEA | -- | | GO:0002064 | epithelial cell development |
IEA | -- | | GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0006884 | cell volume homeostasis |
IEA | -- | About this table
|
Drugs & Compounds for E2F4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for E2F4 2 Novoseek chemical compound relationships for E2F4 gene
About this table
|
Transcripts for E2F4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001950
Sigma-Aldrich siRNA for E2F4  Sigma-Aldrich shRNA Panels and shRNA for E2F4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001950 REFSEQ mRNAs for E2F4 gene: NM_001950.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001950               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001950                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001950                                  untagged cDNA clone in CMV expression vector: NM_001950  Additional cDNA sequence: AB451292.1 AB451425.1 BC021050.1 BC033180.1 CR609179.1 CR614512.1 S75174.1 U15641.1 X86096.1 15 DOTS entries: DT.454769 DT.91753352 DT.100793333 DT.100793325 DT.91990113 DT.100764714 DT.120684194 DT.87006638 DT.95155691 DT.91753350 DT.97847998 DT.100793327 DT.100793336 DT.91753348 DT.120684199 24/304 AceView cDNA sequences (see all 304
):BM068744 BI261063 BC021050 Z41328 BI906524 BQ067481 BQ684920 BF984018 AI888615 BI907427 CF135053 BM547802 BX438889 BI911650 BM740399 CF132202 BX111165 AI475130 BM678392 BM721878 BQ932976 AA766116 BM739597 BM799271
highest scoring ESTs for E2F4:AA552140 S75174 AA065319 AA065320 AA234038 AA258249 AA259094 AA282158 AA282207 AA283756 Unigene Cluster for E2F4: E2F transcription factor 4, p107/p130-binding Hs.108371 [show with all ESTs]Unigene Representative Sequence: NM_001950
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000379378
|
Expression for E2F4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| E2F4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for E2F4
1 / 2 / 3 8 probe-sets matching E2F4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCTAAGGCTA
SOURCE GeneReport for Unigene cluster: Hs.108371
Expression variation in blood from EXPOLDB for E2F4 UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254Tissue specificity: Found in all tissue examined including heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas |
Orthologs for E2F4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for E2F4 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for E2F4
ENSEMBL Gene Tree for E2F4 | Paralogs for E2F4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for E2F4 gene
- E2F52 E2F62
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for E2F4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: E2F4_HUMAN, Q16254Polymorphism: The poly-Ser region of E2F4 is polymorphic and the number of Ser varies in the population (from 8 to 17). The variation might be associated with tumorigenesis
HapMap Linkage Disequilibrium images for E2F4 (up to first 250kb)
|
Disorders & Mutations for E2F4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600659
10/14 Novoseek disease relationships for E2F4 gene (see all 14
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| retinoblastoma |
79.62 |
4 |
9139687 (1), 15548374 (1), 12674332 (1), 12754095 (1) |
| microsatellite instability |
58.99 |
1 |
10679953 (1) |
| tumors |
35.16 |
19 |
10797289 (3), 9824204 (2), 12373148 (2), 15867222 (2) (see all 12) |
| cancer |
24.24 |
8 |
10717241 (1), 9777938 (1), 9824204 (1), 15611646 (1) (see all 7) |
| prostate carcinoma |
19.64 |
2 |
15231644 (2) |
| colorectal cancer |
15.96 |
7 |
12148576 (5), 10679953 (1), 11706064 (1) |
| colon cancer |
12.64 |
1 |
12373148 (1) |
| somatic mutations |
12.43 |
2 |
9927063 (1), 10797289 (1) |
| ovarian cancer |
12.34 |
3 |
16638845 (2) |
| breast carcinoma |
6.85 |
2 |
11759817 (2) |
About this table
Human Genome Epidemiology Navigator: E2F4 (1 document)
|
Medical News for E2F4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for E2F4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/183 PubMed articles for E2F4 gene (see all 183
):- E2F-4 and E2F-5, two members of the E2F family, are expressed in the early phases of the cell cycle. (PubMed id 7892279)1, 2, 3, 4 Sardet C....Weinberg R.A. (1995)
- E2F-4, a new member of the E2F transcription factor family, interacts with p107. (PubMed id 7958924)1, 2, 3, 4 Ginsberg D.... Livingston D.M. (1994)
- Genomic structure and mutation screening of the E2F4 gene in human tumors. (PubMed id 10797289)1, 3, 4 Schwemmle S. and Pfeifer G.P. (2000)
- Various AGC repeat numbers in the coding region of the human transcription factor gene E2F-4. (PubMed id 10679953)1, 3, 4 Zhong X.... Shimatake H. (2000)
- E2F transcriptional activation requires TRRAP and GCN5 cofactors. (PubMed id 11418595)1, 3, 4 Lang S.E.... Hearing P. (2001)
- Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence. (PubMed id 17531812)3, 4 Litovchick L.... DeCaprio J.A. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- HCF-1 functions as a coactivator for the zinc finger protein Krox20. (PubMed id 14532282)3, 4 Luciano R.L. and Wilson A.C. (2003)
- Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP. (PubMed id 10090723)3, 4 Zheng N.... Pavletich N.P. (1999)
- The predominant E2F complex in human primary haemopoietic cells and in AML blasts contains E2F-4, DP-1 and p130. (PubMed id 9074408)3, 4 Williams C.D....Thomas N.S.B. (1997)
|
Search for E2F4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing E2F4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing E2F4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing E2F4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for E2F4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for E2F4:

 | |
 | | | | |
|
 |  |  |
| | Recombinant Proteins (E2F4) | | Antibodies (E2F4) |
| | | Search Tocris compounds for E2F4 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|