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Aliases & Descriptions for E2F3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZp686C18211 2 | | E2F-3 2, 3 | | KIAA0075 2, 3 | | MGC104598 2 | | OTTHUMP00000018012 2 |
| | | Descriptions |
|---|
| E2F transcription factor 3 2 |
|
| | Search outside databases for aliases for E2F3 genePrevious GC identifer: GC06P020459 |
Summaries for E2F3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for E2F3: The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionally conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This protein and another 2 members, E2F1 and E2F2, have an additional cyclin binding domain. This protein binds specifically to retinoblastoma protein pRB in a cell-cycle dependent manner. [provided by RefSeq] UniProtKB/Swiss-Prot: E2F3_HUMAN, O00716Function: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-3 binds specifically to RB1 protein, in a cell-cycle dependent mannerGene Wiki entry for E2F3 |
Genomic Location for E2F3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the E2F3 gene 
Entrez Gene cytogenetic band: 6p22 Ensembl cytogenetic band: 6p22.3 HGNC cytogenetic band: 6p22E2F3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P020510:
(about GC identifiers)
Start:
|
20,510,377 bp from pter |
End:
|
20,601,921 bp from pter |
Size:
|
91,545 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for E2F3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: E2F3_HUMAN, O00716 (See
protein sequence)Recommended Name: Transcription factor E2F3 Size: 465 amino acids; 49162 Da
Subunit: Component of the DRTF1/E2F transcription factor complex. Binds cooperatively with DP-1 to E2F sites. Interacts with retinoblastoma protein RB1 and related proteins (such as RBL1) that inhibit the E2F transactivation domain. Binds EAPP
Subcellular location: Nucleus
Secondary accessions: Q15000 Q9BZ44Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001940.1
ENSEMBL proteins: ENSP00000262904 ENSP00000367914
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for E2F3: Assays for E2F3: | Protein
Domains/ Families for E2F3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O00716
ProtoNet protein and cluster: O00716 1 Blocks protein family: IPB003316 Transcription factor E2F/dimerisation partner (TDP)
UniProtKB/Swiss-Prot: E2F3_HUMAN, O00716Similarity: Belongs to the E2F/DP family | Gene Function for E2F3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (E2F3) | |  | Millipore RNAi Products for the Analysis of E2F3 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (E2F3) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001949
Applied Biosystems Silencer® siRNAs for E2F3
Sigma-Aldrich siRNA for E2F3  Sigma-Aldrich shRNA Panels and shRNA for E2F3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001949                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001949                                  untagged cDNA clone in CMV expression vector: NM_001949 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001949
UniProtKB/Swiss-Prot: E2F3_HUMAN, O00716Function: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-3 binds specifically to RB1 protein, in a cell-cycle dependent mannerGenatlas biochemistry entry for E2F3:transcription factor E2F-like 3,involved in cell proliferation,controlling genes regulating S phase entry and DNA synthesis,involved in transcription repression in quiescent cell by interaction with histone deacetylase15/21 MGI mutant phenotypes (inferred from 11 alleles ) (MGI details for E2f3) (see all 21
):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for E2F3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for E2F3 (Your Favorite Gene powered by Ingenuity) (see all 7
) 
Gene Network CentralTM Interacting Genes and Proteins Network for E2F3 
5 Interacting proteins for E2F3 (O007161, 2) via UniProtKB, MINT, and/or STRINGAbout this table
4 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0006367 | transcription initiation from RNA polymerase II promoter |
TAS | 8246996 | | GO:0007049 | cell cycle |
IEA | -- | About this table
|
Drugs & Compounds for E2F3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for E2F3 1 Novoseek chemical compound relationship for E2F3 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| oligonucleotide |
0.00 |
1 |
11159908 (1) |
About this table
|
Transcripts for E2F3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (E2F3) | |  | Millipore RNAi Products for the Analysis of E2F3 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (E2F3) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001949
Sigma-Aldrich siRNA for E2F3  Sigma-Aldrich shRNA Panels and shRNA for E2F3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001949 REFSEQ mRNAs for E2F3 gene: NM_001949.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001949               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001949                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001949                                  untagged cDNA clone in CMV expression vector: NM_001949  Additional cDNA sequence: BC099908.1 7 DOTS entries: DT.95157544 DT.316226 DT.91876360 DT.121337303 DT.100764715 DT.97799967 DT.99947754 24/147 AceView cDNA sequences (see all 147
):CA414397 Y10479 BQ436237 AA190904 BX643551 BM802347 AI640363 BM973662 AW043596 NM_001949 AA418827 D38550 AA552312 AW135917 AI148191 AI700195 AU131847 CK905775 BU166423 BM699999 AW518742 AI159954 BM669957 BU633769
highest scoring ESTs for E2F3:D38550 AA075300 AA146763 AA146764 AA146874 AA146875 AA190904 AA191311 AA337886 AA352328 Unigene Clusters for E2F3: E2F transcription factor 3 Hs.269408 [show with all ESTs], Hs.703174 [show with all ESTs]Unigene Representative Sequences: NM_001949, BC099908
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for E2F3
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11a | · | 11b | |
| SP1: | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for E2F3
2 Ensembl transcripts including schematic representations: ENST00000346618
ENST00000378646
|
Expression for E2F3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| E2F3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for E2F3
1 / 2 / 3 5 probe-sets matching E2F3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene clusters: Hs.269408 Hs.703174
Expression variation in blood from EXPOLDB for E2F3 |
Orthologs for E2F3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for E2F3 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for E2F3
ENSEMBL Gene Tree for E2F3 | Paralogs for E2F3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for E2F3 gene
- E2F12 E2F22
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for E2F3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for E2F3 (up to first 250kb)
|
Disorders & Mutations for E2F3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600427
7 Novoseek disease relationships for E2F3 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| retinoblastoma |
79.02 |
10 |
16180235 (3), 16007192 (2), 17251444 (1), 18541154 (1) (see all 5) |
| bladder cancer |
43.70 |
15 |
16909110 (3), 14716298 (3), 15122326 (2), 16938365 (1) (see all 5) |
| aggressiveness |
34.97 |
3 |
16938365 (1), 16909110 (1) |
| prostate cancer |
32.82 |
15 |
15184867 (4), 16909110 (4), 16938365 (1), 16180235 (1) |
| tumors |
31.18 |
20 |
15122326 (5), 16180235 (2), 16340309 (2), 11883935 (1) (see all 8) |
| cancer |
15.11 |
2 |
16938365 (2) |
| primary tumor |
2.11 |
4 |
16180235 (1), 17099872 (1) |
About this table
|
Medical News for E2F3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for E2F3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/98 PubMed articles for E2F3 gene (see all 98
):- The retinoblastoma protein binds to a family of E2F transcription factors. (PubMed id 8246996)2, 3, 4 Lees J.A....Helin K. (1993)
- EAPP, a novel E2F binding protein that modulates E2F-dependent transcription. (PubMed id 15716352)3, 4 Novy M.... Rotheneder H. (2005)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7584044)3, 4 Nomura N....Tabata S. (1994)
- E2F3 amplification and overexpression is associated with invasive tumor growth and rapid tumor cell proliferation in urinary bladder cancer. (PubMed id 15122326)1, 3 Oeggerli M....Sauter G. (2004)
- Role of E2F3 expression in modulating cellular proliferation rate in human bladder and prostate cancer cells. (PubMed id 16909110)1, 3 Olsson A.Y....Cooper C.S. (2007)
- Nuclear overexpression of the E2F3 transcription factor in human lung cancer. (PubMed id 16938365)1, 3 Cooper C.S....Cheng S.J. (2006)
- Expression analysis of 6p22 genomic gain in retinoblastoma. (PubMed id 16180235)1, 3 Orlic M....Gallie B.L. (2006)
- Amplification and overexpression of E2F3 in human bladder cancer. (PubMed id 14716298)1, 3 Feber A....Cooper C.S. (2004)
- Identification of E-box factor TFE3 as a functional partner for the E2F3 transcription factor. (PubMed id 12748276)1, 3 Giangrande P.H....Nevins J.R. (2003)
|
Search for E2F3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing E2F3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing E2F3
(According to HUGE)
About This Section
| |
Specialized Databases showing E2F3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for E2F3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for E2F3:

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Incremental update: 13 Oct 2009
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