 |
 | Services
| |
 |
Aliases & Descriptions for E2F1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| E2F-1 2, 3 | | OTTHUMP00000030661 2 | | PBR3 3 | | RBAP-1 3 | | RBAP1 2 | | RBBP-3 3 | | RBBP3 2, 3 | | RBP3 1, 2 |
| | | Descriptions |
|---|
| E2F transcription factor 1 2 | | PRB-binding protein E2F-1 3 | | Retinoblastoma-associated protein 1 2, 3 | | Retinoblastoma-binding protein 3 3 |
|
| | Search outside databases for aliases for E2F1 genePrevious GC identifers: GC20M032022 GC20M031981 GC20M032931 GC20M032979 |
Summaries for E2F1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for E2F1: The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionally conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This protein and another 2 members, E2F2 and E2F3, have an additional cyclin binding domain. This protein binds preferentially to retinoblastoma protein pRB in a cell-cycle dependent manner. It can mediate both cell proliferation and p53-dependent/independent apoptosis. [provided by RefSeq] UniProtKB/Swiss-Prot: E2F1_HUMAN, Q01094Function: Transcription activator that binds DNA cooperatively with dp proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-1 binds preferentially RB1 protein, in a cell-cycle dependent manner. It can mediate both cell proliferation and p53-dependent apoptosisGene Wiki entry for E2F1 |
Genomic Location for E2F1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the E2F1 gene 
Entrez Gene cytogenetic band: 20q11.2 Ensembl cytogenetic band: 20q11.22 HGNC cytogenetic band: 20q11E2F1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M031727:
(about GC identifiers)
Start:
|
31,727,150 bp from pter |
End:
|
31,737,854 bp from pter |
Size:
|
10,705 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000020.9 NT_028392.5
| Proteins for E2F1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: E2F1_HUMAN, Q01094 (See
protein sequence)Recommended Name: Transcription factor E2F1 Size: 437 amino acids; 46920 Da
Subunit: Component of the DRTF1/E2F transcription factor complex. Forms heterodimers with DP family members. The E2F-1 complex binds specifically hypophosphorylated retinoblastoma protein RB1. During the cell cycle, RB1 becomes phosphorylated in mid-to-late G1 phase, detaches from the DRTF1/E2F complex, rendering E2F transcriptionally active. Viral oncoproteins, notably E1A, T-antigen and HPV E7, are capable of sequestering RB protein, thus releasing the active complex. Interacts with TRRAP, which probably mediates its interaction with histone acetyltransferase complexes, leading to transcription activation. Binds TOPBP1 and EAPP. Interacts with ARID3A
Subcellular location: Nucleus
PDB structures from and Proteopedia :1H24 (3D)
 1O9K (3D)
 2AZE (3D)
 
Secondary accessions: Q13143 Q92768Post-translational modifications:
Phosphorylated by CDK2 and cyclin A-CDK2 in the S-phase1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005216.1
ENSEMBL proteins: ENSP00000385002 ENSP00000345571
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for E2F1:  | Invitrogen Antibodies for E2F1 |  | Millipore Mono- and Polyclonal Antibodies for the study of E2F1 |  | Sigma-Aldrich Antibody Arrays and Antibodies for E2F1 |  | R&D Systems Antibodies for E2F1 (E2F-1) |  | Cell Signaling Technology (CST) Antibodies for E2F1  (E2F-1) |  | Antibodies from Abcam (E2F1), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (E2F1) |  | Novus Biologicals Antibodies for E2F1 |
Assays for E2F1: | Protein
Domains/ Families for E2F1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q01094
ProtoNet protein and cluster: Q01094 1 Blocks protein family: IPB003316 Transcription factor E2F/dimerisation partner (TDP)
UniProtKB/Swiss-Prot: E2F1_HUMAN, Q01094Similarity: Belongs to the E2F/DP family | Gene Function for E2F1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (E2F1) | |  | Millipore RNAi Products for the Analysis of E2F1 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (E2F1) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005225
Applied Biosystems Silencer® siRNAs for E2F1
Sigma-Aldrich siRNA for E2F1  Sigma-Aldrich shRNA Panels and shRNA for E2F1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005225                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005225                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005225 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005225
UniProtKB/Swiss-Prot: E2F1_HUMAN, Q01094Function: Transcription activator that binds DNA cooperatively with dp proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F-1 binds preferentially RB1 protein, in a cell-cycle dependent manner. It can mediate both cell proliferation and p53-dependent apoptosisGenatlas biochemistry entry for E2F1:transcription factor E2F1,involved in cell proliferation and apoptosis,controlling genes regulating S phase entry and DNA synthesis,downregulated in post-mitotic neurons by interaction with NDN and proteolysis through the ubiquitin-proteasome pathway15/22 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for E2f1) (see all 22
):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for E2F1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/14 Sigma-Aldrich "Your Favorite Gene" Pathways for E2F1 (Your Favorite Gene powered by Ingenuity) (see all 14
) 
Gene Network CentralTM Interacting Genes and Proteins Network for E2F1 
5/184 Interacting proteins for E2F1 (ENSP000003455713 Q010941, 2) via UniProtKB, MINT, and/or STRING (see all 184
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): About this table
|
Drugs & Compounds for E2F1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for E2F1 10/24 Novoseek chemical compound relationships for E2F1 gene (see all 24
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| p202 |
59.22 |
3 |
12646190 (2) |
| dihydrofolate |
55.54 |
17 |
10823896 (2), 8441401 (1), 9671466 (1), 12965081 (1) (see all 13) |
| noxa |
34.01 |
2 |
17146434 (1), 14684737 (1) |
| thymidine |
22.85 |
13 |
14654896 (2), 9671466 (1), 15911984 (1), 7623816 (1) (see all 10) |
| bromodeoxyuridine |
17.92 |
2 |
9188631 (1), 10235113 (1) |
| benzo(a)pyrene |
13.50 |
12 |
16406622 (4), 16944783 (3), 16600106 (2), 18448277 (1) (see all 5) |
| hoechst 33342 |
9.90 |
3 |
11151061 (3) |
| oligonucleotide |
6.43 |
2 |
11313881 (1), 11159908 (1) |
| steroid |
5.28 |
4 |
16916939 (2), 8918469 (1), 9238849 (1) |
| atp |
1.90 |
1 |
16972274 (1) |
About this table
2 PharmGKB drug compound relationships for E2F1 geneAbout this table
|
Transcripts for E2F1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (E2F1) | |  | Millipore RNAi Products for the Analysis of E2F1 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (E2F1) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005225
Sigma-Aldrich siRNA for E2F1  Sigma-Aldrich shRNA Panels and shRNA for E2F1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005225 REFSEQ mRNAs for E2F1 gene: NM_005225.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005225               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005225                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005225                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005225  Additional cDNA sequence: AF086380.1 BC005098.1 BC050369.2 BC058902.1 CR593152.1 CR594055.1 CR594440.1 CR599810.1 M96577.1 S49592.1 9 DOTS entries: DT.311649 DT.100025819 DT.92427744 DT.120827205 DT.100745520 DT.100788668 DT.92427743 DT.99953894 DT.100708656 24/140 AceView cDNA sequences (see all 140
):BM848627 BX375969 BC005098 BQ069913 BQ898480 BU680954 BG740997 CR594440 F03046 BE266523 BM766189 S49592 BM712904 AF086380 BU193046 BM847643 BQ226207 CR599810 CA430665 AU131577 BM916982 BM797776 CR593152 BC058902
highest scoring ESTs for E2F1:BX325312 M96577 AW440969 BM785165 BM847643 BM848627 BE560911 BF512764 BI829428 BQ064525 Unigene Cluster for E2F1: E2F transcription factor 1 Hs.654393 [show with all ESTs]Unigene Representative Sequence: NM_005225
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for E2F1
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for E2F1
2 Ensembl transcripts including schematic representations: ENST00000402461
ENST00000343380
|
Expression for E2F1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| E2F1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for E2F1
1 / 2 / 3 6 probe-sets matching E2F1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGTGGTCAGA
SOURCE GeneReport for Unigene cluster: Hs.654393
Expression variation in blood from EXPOLDB for E2F1 |
Orthologs for E2F1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for E2F1 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for E2F1
ENSEMBL Gene Tree for E2F1 | Paralogs for E2F1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for E2F1 gene
- E2F32 E2F22
|
SNPs/Variants for E2F1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for E2F1 (up to first 250kb)
|
Disorders & Mutations for E2F1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 189971
10/93 Novoseek disease relationships for E2F1 gene (see all 93
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| retinoblastoma |
91.80 |
153 |
12610352 (3), 15187102 (2), 8918469 (2), 16230367 (2) (see all 99) |
| tumors |
64.56 |
259 |
12379749 (7), 10340908 (6), 10794484 (5), 17359698 (5) (see all 99) |
| cancer |
57.39 |
79 |
9045954 (3), 10811110 (2), 16243973 (2), 16476732 (2) (see all 51) |
| osteosarcoma |
39.96 |
7 |
15883045 (1), 17001603 (1), 11393276 (1), 16849574 (1) (see all 6) |
| carcinoma non-small cell lung |
39.89 |
10 |
14997382 (4), 12237872 (1), 11052627 (1), 15466399 (1) (see all 5) |
| prostate cancer |
38.67 |
30 |
17349545 (5), 17178887 (5), 12947120 (3), 11577016 (3) (see all 12) |
| colon cancer |
35.72 |
24 |
10914714 (4), 12677090 (3), 11705881 (3), 11961668 (2) (see all 11) |
| adenovirus infections |
33.53 |
2 |
11961668 (1), 10666238 (1) |
| neoplastic transformation |
33.03 |
2 |
9619599 (1), 9083010 (1) |
| carcinoma squamous cell |
32.64 |
26 |
10871839 (3), 14506162 (3), 9748148 (2), 16126868 (2) (see all 15) |
About this table
1 PharmGKB disease relationship for E2F1 gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Leukemia | FA   | 12084458 | About this table
Genetic Association Database: E2F1 Human Genome Epidemiology Navigator: E2F1 (2 documents)
|
Medical News for E2F1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for E2F1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/924 PubMed articles for E2F1 gene (see all 924
):- Structure and partial genomic sequence of the human E2F1 gene. (PubMed id 8964493)1, 2, 3, 4 Neuman E....Kaelin W.G. Jr. (1996)
- Regulation of E2F1 by BRCT domain-containing protein TopBP1. (PubMed id 12697828)1, 3, 4 Liu K.... Lin W.-C. (2003)
- Phosphorylation of E2F-1 by cyclin A-cdk2. (PubMed id 7838523)1, 3, 4 Kitagawa M.... Okuyama A. (1995)
- Cyclin A/CDK2 binds directly to E2F-1 and inhibits the DNA-binding activity of E2F-1/DP-1 by phosphorylation. (PubMed id 7969176)1, 3, 4 Xu M.... Piwnica-Worms H. (1994)
- P53 and E2F-1 cooperate to mediate apoptosis. (PubMed id 8170954)1, 3, 4 Wu X. and Levine A.J. (1994)
- Autoregulatory control of E2F1 expression in response to positive and negative regulators of cell cycle progression. (PubMed id 7958836)1, 3, 4 Johnson D.G.... Nevins J.R. (1994)
- Specificity determinants of recruitment peptides bound to phospho- CDK2/cyclin A. (PubMed id 12501191)1, 3, 4 Lowe E.D.... Johnson L.N. (2002)
- E2F transcriptional activation requires TRRAP and GCN5 cofactors. (PubMed id 11418595)1, 3, 4 Lang S.E.... Hearing P. (2001)
- Specific regulation of E2F family members by cyclin-dependent kinases. (PubMed id 9199321)1, 3, 4 Dynlacht B.D.... Zhu L. (1997)
- Negative regulation of the growth-promoting transcription factor E2F- 1 by a stably bound cyclin A-dependent protein kinase. (PubMed id 8033208)1, 3, 4 Krek W....Livingston D.M. (1994)
|
Search for E2F1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing E2F1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing E2F1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing E2F1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for E2F1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for E2F1:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for E2F1  (E2F-1) |
| | Recombinant Proteins (E2F1) | | Antibodies (E2F1) |
| | | Search Tocris compounds for E2F1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|