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Aliases for DUXAP8 Gene

Aliases for DUXAP8 Gene

  • Double Homeobox A Pseudogene 8 2 3 5

External Ids for DUXAP8 Gene

Previous GeneCards Identifiers for DUXAP8 Gene

  • GC22U900285
  • GC22M014528
  • GC22M016149
  • GC22M000019
  • GC22P015826

Summaries for DUXAP8 Gene

Entrez Gene Summary for DUXAP8 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DUXA homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for DUXAP8 Gene

DUXAP8 (Double Homeobox A Pseudogene 8) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DUXAP8 Gene

Genomics for DUXAP8 Gene

Regulatory Elements for DUXAP8 Gene

Enhancers for DUXAP8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around DUXAP8 on UCSC Golden Path with GeneCards custom track

Promoters for DUXAP8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around DUXAP8 on UCSC Golden Path with GeneCards custom track

Genomic Location for DUXAP8 Gene

Chromosome:
22
Start:
15,784,954 bp from pter
End:
15,829,984 bp from pter
Size:
45,031 bases
Orientation:
Plus strand

Genomic View for DUXAP8 Gene

Genes around DUXAP8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DUXAP8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DUXAP8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DUXAP8 Gene

Proteins for DUXAP8 Gene

Post-translational modifications for DUXAP8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DUXAP8 Gene

Domains & Families for DUXAP8 Gene

Gene Families for DUXAP8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DUXAP8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DUXAP8 Gene

Function for DUXAP8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DUXAP8 Gene

Localization for DUXAP8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DUXAP8 Gene

Pathways & Interactions for DUXAP8 Gene

SuperPathways for DUXAP8 Gene

No Data Available

Interacting Proteins for DUXAP8 Gene

Gene Ontology (GO) - Biological Process for DUXAP8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DUXAP8 Gene

Drugs & Compounds for DUXAP8 Gene

No Compound Related Data Available

Transcripts for DUXAP8 Gene

mRNA/cDNA for DUXAP8 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DUXAP8 Gene

No ASD Table

Relevant External Links for DUXAP8 Gene

GeneLoc Exon Structure for
DUXAP8
ECgene alternative splicing isoforms for
DUXAP8

Expression for DUXAP8 Gene

mRNA expression in normal human tissues for DUXAP8 Gene

mRNA expression in normal human tissues for DUXAP8 Gene

NURSA nuclear receptor signaling pathways regulating expression of DUXAP8 Gene:

DUXAP8
genes like me logo Genes that share expression patterns with DUXAP8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DUXAP8 Gene

Orthologs for DUXAP8 Gene

Evolution for DUXAP8 Gene

ENSEMBL:
Gene Tree for DUXAP8 (if available)
TreeFam:
Gene Tree for DUXAP8 (if available)

No data available for Orthologs for DUXAP8 Gene

Paralogs for DUXAP8 Gene

No data available for Paralogs for DUXAP8 Gene

Variants for DUXAP8 Gene

Sequence variations from dbSNP and Humsavar for DUXAP8 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs714813 -- 15,815,473(+) CCTTG(C/T)AGGAA intron-variant
rs13433549 -- 15,826,003(-) TGACC(C/T)TGGGA intron-variant
rs13433615 -- 15,788,448(-) tacac(A/G)tatca intron-variant
rs1048475 -- 15,814,095(+) ATTGC(C/T)TCCAG intron-variant
rs1053663 -- 15,798,156(+) TAACT(G/T)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DUXAP8 Gene

Variant ID Type Subtype PubMed ID
dgv168n111 CNV duplication 26073780
dgv2418n106 CNV duplication 24896259
dgv2419n106 CNV duplication 24896259
dgv2522e59 CNV duplication 20981092
dgv2523e59 CNV duplication 20981092
dgv2524e59 CNV duplication 20981092
dgv4450n100 CNV gain 25217958
dgv4451n100 CNV gain+loss 25217958
dgv4452n100 CNV loss 25217958
dgv4453n100 CNV gain 25217958
dgv4455n100 CNV loss 25217958
dgv71n68 CNV gain 17160897
dgv7934n54 CNV gain 21841781
dgv7936n54 CNV loss 21841781
dgv7937n54 CNV gain 21841781
dgv98e203 CNV gain+loss 21179565
esv25550 CNV gain+loss 19812545
esv33426 CNV gain+loss 17666407
esv3366825 CNV duplication 20981092
esv3367189 CNV duplication 20981092
esv3374146 CNV duplication 20981092
esv3386136 CNV duplication 20981092
esv3386528 CNV duplication 20981092
esv3389666 CNV duplication 20981092
esv3392618 CNV duplication 20981092
esv3394778 CNV duplication 20981092
esv3395652 CNV duplication 20981092
esv3415837 CNV duplication 20981092
esv3418037 CNV duplication 20981092
esv3439345 CNV duplication 20981092
esv3584479 CNV gain 24956385
esv3584775 CNV loss 24956385
esv3893421 CNV gain 25118596
esv995567 CNV loss 20482838
nsv1061008 CNV loss 25217958
nsv1077405 CNV duplication 25765185
nsv1077406 CNV duplication 25765185
nsv1150052 CNV duplication 26484159
nsv1160722 CNV duplication 26073780
nsv428384 CNV gain+loss 18775914
nsv469815 CNV gain+loss 16826518
nsv471709 CNV gain+loss 15918152
nsv588004 CNV gain 21841781
nsv588011 CNV gain 21841781
nsv588016 CNV gain+loss 21841781
nsv821525 CNV duplication 20802225
nsv821691 CNV loss 15273396
nsv953666 CNV duplication 24416366
nsv953667 CNV duplication 24416366
nsv964564 CNV duplication 23825009
nsv964565 CNV duplication 23825009
nsv966055 CNV duplication 23825009
nsv979616 CNV duplication 23825009
nsv979689 CNV duplication 23825009
nsv9866 CNV gain+loss 18304495

Relevant External Links for DUXAP8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DUXAP8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DUXAP8 Gene

Disorders for DUXAP8 Gene

Relevant External Links for DUXAP8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DUXAP8

No disorders were found for DUXAP8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DUXAP8 Gene

Publications for DUXAP8 Gene

  1. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth H.A. … Holland P.W.H. (Gene 2007) 3 65
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for DUXAP8 Gene

Sources for DUXAP8 Gene

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