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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DUSP28 Gene

protein-coding   GIFtS: 42
GCID: GC02P241499

Dual Specificity Phosphatase 28

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Dual Specificity Phosphatase 281 2
DUSP262
VHP2
EC 3.1.3.163
EC 3.1.3.483

External Ids:    HGNC: 332371   Entrez Gene: 2851932   Ensembl: ENSG000001885427   UniProtKB: Q4G0W23   

Export aliases for DUSP28 gene to outside databases

Previous GC identifers: GC02P241149 GC02P233255


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for DUSP28 Gene: 
DUSP28 (dual specificity phosphatase 28) is a protein-coding gene. Diseases associated with DUSP28 include hemophilia b, and hemophilia. GO annotations related to this gene include protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. An important paralog of this gene is DUSP4.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.2  NT_005416.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DUSP28 gene promoter:
         GR   GR-beta   Cart-1   Hand1   Msx-1   GR-alpha   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDUSP28 promoter sequence
   Search SABiosciences Chromatin IP Primers for DUSP28

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DUSP28


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q37.3   Ensembl cytogenetic band:  2q37.3   HGNC cytogenetic band: 2q37.1

DUSP28 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DUSP28 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P241499:  view genomic region     (about GC identifiers)

Start:
241,499,471 bp from pter      End:
241,503,431 bp from pter
Size:
3,961 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: DUS28_HUMAN, Q4G0W2 (See protein sequence)
Recommended Name: Dual specificity phosphatase 28  
Size: 176 amino acids; 18324 Da

Explore the universe of human proteins at neXtProt for DUSP28: NX_Q4G0W2

Explore proteomics data for DUSP28 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q4G0W2

  • DUSP28 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    DUSP28 Protein Expression
    REFSEQ proteins: NP_001028747.1  
    ENSEMBL proteins: 
     ENSP00000385885   ENSP00000403899   ENSP00000344235  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    DUSPA: Protein tyrosine phosphatases / Class I Cys-based PTPs : Atypical dual specificity phosphatases

    4 InterPro protein domains:
     IPR000387 Tyr/Dual-sp_Pase
     IPR020422 Dual-sp_phosphatase_subgr_cat
     IPR024950 DUSP
     IPR000340 Dual-sp_phosphatase_cat-dom

    Graphical View of Domain Structure for InterPro Entry Q4G0W2

    ProtoNet protein and cluster: Q4G0W2

    1 Blocks protein domain: IPB000340 Dual specificity protein phosphatase

    UniProtKB/Swiss-Prot: DUS28_HUMAN, Q4G0W2
    Similarity: Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily
    Similarity: Contains 1 tyrosine-protein phosphatase domain


    DUSP28 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DUS28_HUMAN, Q4G0W2
    Catalytic activity: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate
    Catalytic activity: A phosphoprotein + H(2)O = a protein + phosphate

         Enzyme Numbers (IUBMB): EC 3.1.3.161 EC 3.1.3.481

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004725protein tyrosine phosphatase activity IEA--
    GO:0008138protein tyrosine/serine/threonine phosphatase activity IBA--
    GO:0016791phosphatase activity ----
         
    DUSP28 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for DUSP28:
     Decreased BPV1 E2 protein expr  Increased HPV18 LCR reporter a 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DUSP28

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for DUSP28 (ENSP000003442354) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006470protein dephosphorylation ----
    GO:0016311dephosphorylation ----
    GO:0035335peptidyl-tyrosine dephosphorylation IBA--

    DUSP28 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DUSP28 (DUS28)

    1 HMDB Compound for DUSP28    About this table
    CompoundSynonyms CAS #PubMed Ids
    PhosphateNFB Orthophosphate (see all 13)14265-44-2--

    Search CenterWatch for drugs/clinical trials and news about DUSP28 / DUS28

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DUSP28 gene: 
    NM_001033575.1  

    Unigene Cluster for DUSP28:

    Dual specificity phosphatase 28
    Hs.369297  [show with all ESTs]
    Unigene Representative Sequence: BC036198
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000405954(uc002vzh.3) ENST00000438823 ENST00000479788 ENST00000497221
    ENST00000343217(uc002vzg.3)
    miRNA
    Products:
         
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate DUSP28:
    hsa-miR-3611 hsa-miR-3166
    SwitchGear 3'UTR luciferase reporter plasmidDUSP28 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    Additional mRNA sequence: BC036198.1 

    4 DOTS entries:

    DT.403695  DT.102830111  DT.92419419  DT.311361 

    24/46 AceView cDNA sequences (see all 46):

    AI672432 AI016945 CA776854 AA704879 CA777137 AI015191 AW614307 AI027213 
    BF111389 AI695974 BQ777661 CA941825 AW206269 AI950221 BC036198 BF981034 
    AI580677 CA942006 AI498377 CB995480 F25320 AI138344 AI208202 AI264834 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DUSP28 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCATTTATGA
    DUSP28 Expression
    About this image


    See DUSP28 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DUSP28

    SOURCE GeneReport for Unigene cluster: Hs.369297
        SABiosciences Custom PCR Arrays for DUSP28
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DUSP28

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for DUSP28 gene from 5/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dusp281 , 5 dual specificity phosphatase 281, 5 83.54(n)1
    82.28(a)1
      1 (46.60 cM)5
    674461  NM_175118.31  NP_780327.11 
     929069895 
    chicken
    (Gallus gallus)
    Aves DUSP286
    dual specificity phosphatase 28
    54(a)
    1 ↔ 1
    9(2201643-2203933)
    lizard
    (Anolis carolinensis)
    Reptilia DUSP286
    dual specificity phosphatase 28
    55(a)
    1 ↔ 1
    3(37995013-38001943)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1000052051 dual specificity phosphatase 28-like 57.31(n)
    53.96(a)
      100005205  XM_001344284.3  XP_001344320.3 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG155286
    --
    24(a)
    1 ↔ 1
    3R(25874357-25877834)


    ENSEMBL Gene Tree for DUSP28 (if available)
    TreeFam Gene Tree for DUSP28 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for DUSP28 gene
    DUSP42  DUSP212  SSH22  DUSP102  DUSP62  DUSP142  DUSP82  DUSP72  
    DUSP52  SSH32  DUSP162  DUSP92  DUSP22  DUSP182  SSH12  DUSP12  
    6 SIMAP similar genes for DUSP28 using alignment to 2 protein entries:     DUS28_HUMAN (see all proteins):
    SSH2    SSH1    DUSP14    DUSP22    DUSP18    DUSP9

    DUSP28 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/118 SNPs in DUSP28 are shown (see all 118)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1468759071,2
    --241499431(+) ATGCTA/GACCCC 1 -- us2k10--------
    rs1390451621,2
    C--241499469(+) AATAGG/TGTGGT 1 -- us2k10--------
    rs1860785971,2
    --241499641(+) CAGCCC/GGCCGT 1 -- ut510--------
    rs1919770051,2
    --241499666(+) TAGCCA/TCGGGG 1 -- ut510--------
    rs1832498691,2
    --241499753(+) CGGGCA/GGGGCG 1 -- ut510--------
    rs556728551,2
    C,F--241499831(+) GGGACT/AGAGAA 1 -- ut511Minor allele frequency- A:0.50NA 2
    rs1875810901,2
    --241499838(+) AGAACA/GTGGGA 1 -- ut510--------
    rs1148870111,2
    C,F--241500286(+) GCCCGG/ACGTGG 2 /D /G mis11Minor allele frequency- A:0.07WA 118
    rs2017931171,2
    --241500456(+) ACCTCA/TTGCGG 2 M L mis10--------
    rs2012492261,2
    --241500491(+) GCCTTC/TCAGGT 2 F syn10--------

    HapMap Linkage Disequilibrium report for DUSP28 (241499471 - 241503431 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/19 variations for DUSP28 (see all 19):    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv876116CNV Loss21882294
    dgv4476n71CNV Loss21882294
    dgv4475n71CNV Loss21882294
    nsv876157CNV Loss21882294
    dgv4471n71CNV Loss21882294
    nsv876144CNV Loss21882294
    dgv4472n71CNV Loss21882294
    nsv834586CNV Loss17160897
    dgv4473n71CNV Loss21882294
    dgv4474n71CNV Loss21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for DUSP28:    About MalaCards
    hemophilia b    hemophilia    von willebrand's disease


    DUSP28 for disorders           About GeneDecksing


    Export disorders for DUSP28 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DUSP28 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with DUSP28)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 285193 HGNC: 33237 AceView: LOC285193 Ensembl:ENSG00000188542 euGenes: HUgn285193
    ECgene: DUSP28 H-InvDB: DUSP28

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DUSP28 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DUSP28 gene:
    Search GeneIP for patents involving DUSP28

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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