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DUSP28 Gene

protein-coding   GIFtS: 42
GCID: GC02P241499

Dual Specificity Phosphatase 28

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Dual Specificity Phosphatase 281 2
DUSP262
VHP2
EC 3.1.3.163
EC 3.1.3.483

External Ids:    HGNC: 332371   Entrez Gene: 2851932   Ensembl: ENSG000001885427   UniProtKB: Q4G0W23   

Export aliases for DUSP28 gene to outside databases

Previous GC identifers: GC02P241149 GC02P233255


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for DUSP28 Gene:
DUSP28 (dual specificity phosphatase 28) is a protein-coding gene. GO annotations related to this gene include protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. An important paralog of this gene is DUSP26.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NT_005403.18  NC_018913.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the DUSP28 gene promoter:
         GR   GR-beta   Cart-1   Hand1   Msx-1   GR-alpha   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDUSP28 promoter sequence
   Search Chromatin IP Primers for DUSP28

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DUSP28


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q37.3   Ensembl cytogenetic band:  2q37.3   HGNC cytogenetic band: 2q37.1

DUSP28 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DUSP28 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P241499:  view genomic region     (about GC identifiers)

Start:
241,499,471 bp from pter      End:
241,503,431 bp from pter
Size:
3,961 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: DUS28_HUMAN, Q4G0W2 (See protein sequence)
Recommended Name: Dual specificity phosphatase 28  
Size: 176 amino acids; 18324 Da

Explore the universe of human proteins at neXtProt for DUSP28: NX_Q4G0W2

Explore proteomics data for DUSP28 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See DUSP28 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001028747.1  
    ENSEMBL proteins: 
     ENSP00000385885   ENSP00000403899   ENSP00000344235  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    DUSPA: Protein tyrosine phosphatases / Class I Cys-based PTPs : Atypical dual specificity phosphatases

    4 InterPro protein domains:
     IPR000387 Tyr/Dual-sp_Pase
     IPR020422 Dual-sp_phosphatase_subgr_cat
     IPR024950 DUSP
     IPR000340 Dual-sp_phosphatase_cat-dom

    Graphical View of Domain Structure for InterPro Entry Q4G0W2

    ProtoNet protein and cluster: Q4G0W2

    1 Blocks protein domain: IPB000340 Dual specificity protein phosphatase

    UniProtKB/Swiss-Prot: DUS28_HUMAN, Q4G0W2
    Similarity: Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily
    Similarity: Contains 1 tyrosine-protein phosphatase domain


    Find genes that share domains with DUSP28           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DUS28_HUMAN, Q4G0W2
    Catalytic activity: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate
    Catalytic activity: [a protein]-serine/threonine phosphate + H(2)O = [a protein]-serine/threonine + phosphate

         Enzyme Numbers (IUBMB): EC 3.1.3.161 EC 3.1.3.481

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004725protein tyrosine phosphatase activity IEA--
    GO:0008138protein tyrosine/serine/threonine phosphatase activity IBA--
    GO:0016791phosphatase activity ----
         
    Find genes that share ontologies with DUSP28           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for DUSP28:
     Decreased BPV1 E2 protein expr  Increased HPV18 LCR reporter a 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for DUSP28

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    extracellular2
    mitochondrion1
    nucleus1
    plasma membrane1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for DUSP28
    Interactions:

        Search GeneGlobe Interaction Network for DUSP28

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for DUSP28 (ENSP000003442354) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006470protein dephosphorylation ----
    GO:0016311dephosphorylation ----
    GO:0035335peptidyl-tyrosine dephosphorylation IBA--

    Find genes that share ontologies with DUSP28           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for DUSP28 (DUS28)

    1 HMDB Compound for DUSP28    About this table
    CompoundSynonyms CAS #PubMed Ids
    PhosphateNFB Orthophosphate (see all 13)14265-44-2--



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for DUSP28 gene: 
    NM_001033575.1  

    Unigene Cluster for DUSP28:

    Dual specificity phosphatase 28
    Hs.369297  [show with all ESTs]
    Unigene Representative Sequence: BC036198
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000405954(uc002vzh.3) ENST00000438823 ENST00000479788 ENST00000497221
    ENST00000343217(uc002vzg.3)
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    hsa-miR-3611 hsa-miR-3166
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    Inhib. RNA
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    Additional mRNA sequence: BC036198.1 

    4 DOTS entries:

    DT.403695  DT.102830111  DT.92419419  DT.311361 

    Selected AceView cDNA sequences (see all 46):

    BQ777661 AW614307 BF111389 AI672432 CA776854 AA704879 AI027213 AI695974 
    AI016945 CA777137 AI015191 AW206269 AI138344 CB995480 BF981034 BC036198 
    AI950221 AI580677 F25320 CA941825 AI498377 CA942006 AW772145 AI034374 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    DUSP28 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCATTTATGA
    DUSP28 Expression
    About this image

    DUSP28 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    DUSP28 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.369297
        Custom PCR Arrays for DUSP28
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for DUSP28 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dusp281 , 5 dual specificity phosphatase 281, 5 83.54(n)1
    82.28(a)1
      1 (46.60 cM)5
    674461  NM_175118.31  NP_780327.11 
     929069895 
    chicken
    (Gallus gallus)
    Aves DUSP281 dual specificity phosphatase 28 66.67(n)
    66.14(a)
      430912  NM_001271527.1  NP_001258456.1 
    lizard
    (Anolis carolinensis)
    Reptilia DUSP286
    dual specificity phosphatase 28
    53(a)
    1 ↔ 1
    3(37995013-38001943)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia dusp281 dual specificity phosphatase 28 54.2(n)
    50.36(a)
      100135072  NM_001113811.1  NP_001107283.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1000052051 dual specificity phosphatase 28-like 57.49(n)
    53.62(a)
      100005205  XM_005163246.1  XP_005163303.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG155286
    --
    26(a)
    1 → many
    3R(25874357-25877834)
    worm
    (Caenorhabditis elegans)
    Secernentea F13D11.36
    F26A3.46
    (see all 4)
    Protein F26A3.4 (F26A3.4) mRNA, complete cds
    (see all 4)
    26(a)
    20(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    X(5804387-5805922) WBGene00017428
    I(7656907-7658291) WBGene00009142


    ENSEMBL Gene Tree for DUSP28 (if available)
    TreeFam Gene Tree for DUSP28 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for DUSP28 gene
    DUSP262  DUSP212  DUPD12  DUSP32  DUSP132  DUSP272  STYX2  DUSP142  
    DUSP192  DUSP152  DUSP222  DUSP182  
    6 SIMAP similar genes for DUSP28 using alignment to 2 protein entries:     DUS28_HUMAN (see all proteins):
    SSH2    SSH1    DUSP14    DUSP18    DUSP22    DUSP9

    Find genes that share paralogs with DUSP28           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for DUSP28 (see all 118)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1468759071,2
    --241499431(+) ATGCTA/GACCCC 1 -- us2k10--------
    rs1390451621,2
    C--241499469(+) AATAGG/TGTGGT 1 -- us2k10--------
    rs1860785971,2
    --241499641(+) CAGCCC/GGCCGT 1 -- ut510--------
    rs1919770051,2
    --241499666(+) TAGCCA/TCGGGG 1 -- ut510--------
    rs1832498691,2
    --241499753(+) CGGGCA/GGGGCG 1 -- ut510--------
    rs556728551,2
    C,F--241499831(+) GGGACT/AGAGAA 1 -- ut511Minor allele frequency- A:0.50NA 2
    rs1875810901,2
    --241499838(+) AGAACA/GTGGGA 1 -- ut510--------
    rs1148870111,2
    C,F--241500286(+) GCCCGG/ACGTGG 2 /D /G mis11Minor allele frequency- A:0.07WA 118
    rs2017931171,2
    --241500456(+) ACCTCA/TTGCGG 2 M L mis10--------
    rs2012492261,2
    --241500491(+) GCCTTC/TCAGGT 2 F syn10--------

    HapMap Linkage Disequilibrium report for DUSP28 (241499471 - 241503431 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for DUSP28 (see all 19):    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv876116CNV Loss21882294
    dgv4476n71CNV Loss21882294
    dgv4475n71CNV Loss21882294
    nsv876157CNV Loss21882294
    dgv4471n71CNV Loss21882294
    nsv876144CNV Loss21882294
    dgv4472n71CNV Loss21882294
    nsv834586CNV Loss17160897
    dgv4473n71CNV Loss21882294
    dgv4474n71CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for DUSP28 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with DUSP28)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 285193 HGNC: 33237 AceView: LOC285193 Ensembl:ENSG00000188542 euGenes: HUgn285193
    ECgene: DUSP28 H-InvDB: DUSP28

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for DUSP28 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for DUSP28 gene:
    Search GeneIP for patents involving DUSP28

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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