DUS4L Gene
protein-coding GIFtS : 52
GCID: GC07 P107203
dihydrouridine synthase 4-like (S. cerevisiae)
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Aliasesfor DUS4L gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Dihydrouridine Synthase 4-Like (S. Cerevisiae) 1 2 TRNA-Dihydrouridine(20a/20b) Synthase [NAD(P)+]-Like2 DUS41 2 EC 1.3.1.-3 PP351 2 Pp351 Protein Similar To E.Coli Yhdg And R. Capsulatus NifR32 TRNA-Dihydrouridine Synthase 4-Like3
Export aliases for DUS4L gene to outside databases Previous GC identifers: GC07P106799 GC07P106991 GC07P101565
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Summariesfor DUS4L gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: DUS4L_HUMAN, O95620 Function : Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs (By similarity)
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Genomic Viewsfor DUS4L gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DUS4L gene promoter: Nkx3-1 Nkx3-1 v4 AML1a NCX/Ncx Nkx3-1 v1 Tal-1beta Gfi-1 E47 Nkx3-1 v2 Nkx3-1 v3 Other transcription factors Search SABiosciences Chromatin IP Primers for DUS4L Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DUS4L
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7q22-q31 Ensembl cytogenetic band: 7q22.3 HGNC cytogenetic band: 7q22-q31 DUS4L Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P107203: view genomic region
(about GC identifiers )
Start:
107,203,929 bp from pter
End:
107,218,968 bp from pter
Size:
15,040 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 106,565,521-106,580,056
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Proteinsfor DUS4L gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DUS4L_HUMAN, O95620 (See
protein sequence )Recommended Name: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like Size : 317 amino acids; 35816 Da
Cofactor : FAD (By similarity)
Sequence caution : Sequence=AAD00100.1; Type=Frameshift; Positions=14;
Secondary accessions : B4DLX0 Q2NKK1Alternative splicing : 2 isoforms : O95620-1 O95620-2 (May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)Explore the universe of human proteins at neXtProt for DUS4L: NX_O95620 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O95620 DUS4L Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001257348.1 NP_853559.1 ENSEMBL proteins: ENSP00000402887 ENSP00000265720 ENSP00000388904 ENSP00000388061 ENSP00000412739 ENSP00000399375 ENSP00000385274 Human Recombinant Protein Products: DUS4L Antibody Products: Assay Products for DUS4L:
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Protein
Domains / Familiesfor DUS4L gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DUS4L for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O95620 ProtoNet protein and cluster: O95620
1 Blocks protein family : IPB001269 Protein of unknown function UPF0034 UniProtKB/Swiss-Prot: DUS4L_HUMAN, O95620 Similarity : Belongs to the dus family. Dus4 subfamily
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Functionfor DUS4L gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DUS4L_HUMAN, O95620 Function : Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs (By similarity)Enzyme Number (IUBMB): EC 1.3.1.- 1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4L (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4LOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DUS4L (NM_181581 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DUS4L Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DUS4L
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DUS4L
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0017150 tRNA dihydrouridine synthase activity
IEA -- GO:0050660 flavin adenine dinucleotide binding
IEA --
DUS4L for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for DUS4L :
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Pathways & Interactionsfor DUS4L gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DUS4L STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5/11 Interacting proteins for DUS4L (O95620 3 ENSP00000265720 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 11 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008033 tRNA processing
-- --
DUS4L for ontologies About GeneDecksing
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Drugs & Compoundsfor DUS4L gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for DUS4L 2 HMDB Compounds for DUS4L About this table Search CenterWatch for drugs/clinical trials and news about DUS4L
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Transcriptsfor DUS4L gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for DUS4L gene (2 alternative transcripts): NM_001270419.1 NM_181581.2 Unigene Cluster for DUS4L:
Dihydrouridine synthase 4-like (S. cerevisiae) Hs.97627 [show with all ESTs ] Unigene Representative Sequence: NR_073002 12 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000498786 ENST00000422290 ENST00000265720 (uc003veh.3 uc011klw.2 uc011klx.2 uc010ljl.3 )ENST00000431839 ENST00000443233 ENST00000436411 (uc022ajw.1 ) ENST00000458611 ENST00000467916 ENST00000471763 ENST00000497798 ENST00000485825 ENST00000402620 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4L (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4LOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DUS4L (NM_181581 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DUS4L Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DUS4L
Additional cDNA sequence: AK294095.1 AK297195.1 AK308472.1 NR_073002.1 NR_073003.1 NR_073004.1 NR_073005.1 U62767.1
12 DOTS entries : DT.110148 DT.121102930
DT.100877360 DT.121103182 DT.100877354 DT.40119094 DT.91748830 DT.100667358 DT.100723879 DT.102836929 DT.70102487 DT.91706089 24/72 AceView cDNA sequences (see all 72 ):
CR605496 AV718761 NM_181581 BQ771928 AI609138 AI275853 CA428914 AW163754 BG250736 AI378669 BU621752 AV714249 AW157722 BX504337 CR602101 CR625341 AL523141 BX356318 CB851456 H59368 H51774 BU685851 BP375403 AI679397 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for DUS4L (see all 9 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c ^ 9a · 9b SP1 :         -   -         -   -       -   -                 SP2 :           -         -         -   -                 SP3 :           -         -   -     -   -   -                 SP4 :                   -   -     -   -   -                 SP5 :           -                                  
ECgene alternative splicing isoforms for DUS4L
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Expression for DUS4L gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section DUS4L expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CACTGCAAGA
About this image DUS4L expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Limb Forelimb Myotome Limb Muscle Progenitor Cells Skeletal Muscle Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See DUS4L Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for DUS4L SOURCE GeneReport for Unigene cluster: Hs.97627 SABiosciences Custom PCR Arrays for DUS4L Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DUS4LBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat DUS4L QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DUS4L QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DUS4L In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DUS4L
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Orthologsfor DUS4L gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the last universal common ancestor (LUCA).
Orthologs for DUS4L gene from 10/36 species (see all 36 ) About this table
ENSEMBL Gene Tree for DUS4L (if available)TreeFam Gene Tree for DUS4L (if available)
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Paralogsfor DUS4L gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor DUS4L gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for DUS4L (107203929 - 107218968 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for DUS4L 2 CNVs : 94794 82142
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DUS4L
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Disorders
/ Diseasesfor DUS4L gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
DUS4L for disorders About GeneDecksing 5 diseases for DUS4L : About MalaCards fanconi's anemia hepatitis b anemia osteoarthritis hepatitis Human Genome Epidemiology (HuGE) Navigator: DUS4L (2 documents) Export disorders for DUS4L gene to outside databases
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Publicationsfor DUS4L gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for DUS4L gene integrated from 9 sources : (articles sorted by number of sources associating them with DUS4L) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496) 1 Davila S....Seielstad M. (2010) Meta-analysis of genome-wide association studies conf irms a susceptibility locus for knee osteoarthritis on chromosome 7q22. (PubMed id 21068099) 1 Evangelou E....Spector T.D. (2010) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Human chromosome 7: DNA sequence and biology. (PubMed id 12690205) 1 Scherer S.W.... Tsui L.-C. (2003) Yeast two-hybrid screens imply involvement of Fanconi anemia proteins in transcription regulation, cell signaling, oxidative metabolism, and cellular transport. (PubMed id 14499622) 1 Reuter T.Y....Huber P.A. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000) Generation and analysis of 280,000 human expressed sequence tags. (PubMed id 8889549) 1 Hillier L.D....Marra M. (1996)
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External Searches for DUS4L gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DUS4L gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DUS4L gene
(According to HUGE )
About This Section --
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Specialized Databases showing DUS4L gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for DUS4L Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for DUS4L gene: Search GeneIP for patents involving DUS4L GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DUS4L gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for DUS4L OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DUS4L OriGene Protein Over-expression Lysate for DUS4L Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for DUS4L OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4L OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DUS4L Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for DUS4L OriGene Custom Protein Services for DUS4L OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DUS4L QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DUS4L QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DUS4L QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat DUS4L QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DUS4L QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DUS4L
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DUS4L Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DUS4L
ThermoFisher Antibodies for DUS4L
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DUS4L
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