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Aliases for DTX2P1-UPK3BP1-PMS2P11 Gene

Aliases for DTX2P1-UPK3BP1-PMS2P11 Gene

  • DTX2P1-UPK3BP1-PMS2P11 Readthrough, Transcribed Pseudogene 2 3 5
  • DTX2P1-UPK3BP1-PMS2P11 Readthrough (Non-Protein Coding) 2 3
  • PMS2-DTX2-UPK3B Pseudogene 3
  • PMS2L11 3

External Ids for DTX2P1-UPK3BP1-PMS2P11 Gene

Previous GeneCards Identifiers for DTX2P1-UPK3BP1-PMS2P11 Gene

  • GC07P076611
  • GC07P076612
  • GC07P076614
  • GC07P076980

Summaries for DTX2P1-UPK3BP1-PMS2P11 Gene

Entrez Gene Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

  • This locus represents naturally-occurring readthrough transcription spanning multiple pseudogenes: DTX2P1 (DTX2 pseudogene 1), UPK3BP1 (uroplakin 3B pseudogene 1), PMS2P11 (PMS1 homolog 2, mismatch repair system component pseudogene 11). Some transcripts may also extend to PMS2P9 (PMS1 homolog 2, mismatch repair system component pseudogene 9). The readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Jan 2016]

GeneCards Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

DTX2P1-UPK3BP1-PMS2P11 (DTX2P1-UPK3BP1-PMS2P11 Readthrough, Transcribed Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

Genomics for DTX2P1-UPK3BP1-PMS2P11 Gene

Genomic Location for DTX2P1-UPK3BP1-PMS2P11 Gene

Chromosome:
7
Start:
76,959,835 bp from pter
End:
77,043,775 bp from pter
Size:
83,941 bases
Orientation:
Plus strand

Genomic View for DTX2P1-UPK3BP1-PMS2P11 Gene

Genes around DTX2P1-UPK3BP1-PMS2P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DTX2P1-UPK3BP1-PMS2P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DTX2P1-UPK3BP1-PMS2P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for Regulatory Elements for DTX2P1-UPK3BP1-PMS2P11 Gene

Proteins for DTX2P1-UPK3BP1-PMS2P11 Gene

Post-translational modifications for DTX2P1-UPK3BP1-PMS2P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DTX2P1-UPK3BP1-PMS2P11 Gene

Domains & Families for DTX2P1-UPK3BP1-PMS2P11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DTX2P1-UPK3BP1-PMS2P11 Gene

Function for DTX2P1-UPK3BP1-PMS2P11 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DTX2P1-UPK3BP1-PMS2P11 Gene

Localization for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DTX2P1-UPK3BP1-PMS2P11 Gene

Pathways & Interactions for DTX2P1-UPK3BP1-PMS2P11 Gene

SuperPathways for DTX2P1-UPK3BP1-PMS2P11 Gene

No Data Available

Interacting Proteins for DTX2P1-UPK3BP1-PMS2P11 Gene

Gene Ontology (GO) - Biological Process for DTX2P1-UPK3BP1-PMS2P11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DTX2P1-UPK3BP1-PMS2P11 Gene

Transcripts for DTX2P1-UPK3BP1-PMS2P11 Gene

mRNA/cDNA for DTX2P1-UPK3BP1-PMS2P11 Gene

(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DTX2P1-UPK3BP1-PMS2P11 Gene

DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DTX2P1-UPK3BP1-PMS2P11 Gene

No ASD Table

Relevant External Links for DTX2P1-UPK3BP1-PMS2P11 Gene

GeneLoc Exon Structure for
DTX2P1-UPK3BP1-PMS2P11
ECgene alternative splicing isoforms for
DTX2P1-UPK3BP1-PMS2P11

Expression for DTX2P1-UPK3BP1-PMS2P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DTX2P1-UPK3BP1-PMS2P11 Gene

SOURCE GeneReport for Unigene cluster for DTX2P1-UPK3BP1-PMS2P11 Gene:

Hs.675888
genes like me logo Genes that share expression patterns with DTX2P1-UPK3BP1-PMS2P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DTX2P1-UPK3BP1-PMS2P11 Gene

Orthologs for DTX2P1-UPK3BP1-PMS2P11 Gene

Evolution for DTX2P1-UPK3BP1-PMS2P11 Gene

ENSEMBL:
Gene Tree for DTX2P1-UPK3BP1-PMS2P11 (if available)
TreeFam:
Gene Tree for DTX2P1-UPK3BP1-PMS2P11 (if available)

No data available for Orthologs for DTX2P1-UPK3BP1-PMS2P11 Gene

Paralogs for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for Paralogs for DTX2P1-UPK3BP1-PMS2P11 Gene

Variants for DTX2P1-UPK3BP1-PMS2P11 Gene

Sequence variations from dbSNP and Humsavar for DTX2P1-UPK3BP1-PMS2P11 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1004563 -- 76,990,381(-) CGAGG(G/T)CAGGC intron-variant
rs10252498 -- 76,998,927(+) gtgtg(A/T)gtgta intron-variant
rs10262865 -- 76,999,136(+) TTCCC(G/T)TTTGA intron-variant
rs10263208 -- 76,993,477(+) GTGGG(A/G)GCTTC intron-variant
rs10278476 -- 77,008,124(+) CTGCG(A/G)CCCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DTX2P1-UPK3BP1-PMS2P11 Gene

Variant ID Type Subtype PubMed ID
nsv981674 CNV duplication 23825009
nsv981673 CNV duplication 23825009
nsv970898 CNV duplication 23825009
nsv970544 CNV duplication 23825009
nsv951362 CNV deletion 24416366
nsv831038 CNV loss 17160897
nsv824178 CNV gain 20364138
nsv820936 CNV deletion 20802225
nsv818523 CNV gain 17921354
nsv8164 CNV gain+loss 18304495
nsv607645 CNV gain 21841781
nsv607593 CNV gain 21841781
nsv5801 CNV deletion 18451855
nsv526097 CNV gain 19592680
nsv517634 CNV gain+loss 19592680
nsv470321 CNV gain 18288195
nsv428174 CNV gain 18775914
nsv1148810 CNV insertion 26484159
nsv1140203 CNV insertion 24896259
nsv1132650 CNV duplication 24896259
nsv1075036 CNV deletion 25765185
nsv1034874 CNV loss 25217958
esv6344 CNV loss 19470904
esv5776 CNV loss 19470904
esv5293 CNV loss 18987735
esv3891147 CNV gain+loss 25118596
esv3613766 CNV loss 21293372
esv3431915 CNV duplication 20981092
esv34102 CNV loss 18971310
esv3343331 CNV duplication 20981092
esv33336 CNV gain 17666407
esv2742165 CNV deletion 23290073
esv2741833 CNV deletion 23290073
esv2734691 CNV deletion 23290073
esv2734690 CNV deletion 23290073
esv2734689 CNV deletion 23290073
esv2734687 CNV deletion 23290073
esv2422494 CNV duplication 17116639
esv23975 CNV gain+loss 19812545
dgv823n27 CNV gain 19166990
dgv822n27 CNV loss 19166990
dgv6501n100 CNV gain 25217958
dgv6475n100 CNV gain 25217958
dgv63n64 CNV loss 17921354
dgv233e55 CNV loss 17911159
dgv232e55 CNV gain 17911159
dgv22n31 CNV gain 19718026
dgv121n16 CNV insertion 17901297
dgv1218e199 CNV deletion 23128226
dgv11464n54 CNV gain 21841781

Relevant External Links for DTX2P1-UPK3BP1-PMS2P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DTX2P1-UPK3BP1-PMS2P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DTX2P1-UPK3BP1-PMS2P11 Gene

Disorders for DTX2P1-UPK3BP1-PMS2P11 Gene

Relevant External Links for DTX2P1-UPK3BP1-PMS2P11

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DTX2P1-UPK3BP1-PMS2P11

No disorders were found for DTX2P1-UPK3BP1-PMS2P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DTX2P1-UPK3BP1-PMS2P11 Gene

Publications for DTX2P1-UPK3BP1-PMS2P11 Gene

  1. Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. (PMID: 20935630) Speliotes E.K. … Loos R.J. (Nat. Genet. 2010) 3 64
  2. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64
  5. PMS2-related genes flank the rearrangement breakpoints associated with Williams syndrome and other diseases on human chromosome 7. (PMID: 9344666) Osborne L.R. … Scherer S.W. (Genomics 1997) 3 64

Products for DTX2P1-UPK3BP1-PMS2P11 Gene

Sources for DTX2P1-UPK3BP1-PMS2P11 Gene

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