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Aliases for DTHD1 Gene

Aliases for DTHD1 Gene

  • Death Domain Containing 1 2 3 5

External Ids for DTHD1 Gene

Previous GeneCards Identifiers for DTHD1 Gene

  • GC04P035961
  • GC04P035609

Summaries for DTHD1 Gene

Entrez Gene Summary for DTHD1 Gene

  • This gene encodes a protein which contains a death domain. Death domain-containing proteins function in signaling pathways and formation of signaling complexes, as well as the apoptosis pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2012]

GeneCards Summary for DTHD1 Gene

DTHD1 (Death Domain Containing 1) is a Protein Coding gene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DTHD1 Gene

Genomics for DTHD1 Gene

Regulatory Elements for DTHD1 Gene

Enhancers for DTHD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G036280 1.7 FANTOM5 Ensembl ENCODE dbSUPER 35.6 +2.4 2378 6.8 PKNOX1 TBL1XR1 BMI1 EGR1 CBX5 FOS RELB ETV6 IKZF2 CREM DTHD1 LOC439933 ARAP2 LOC105374399
GH04G036267 1.2 FANTOM5 ENCODE dbSUPER 42 -12.8 -12760 2.6 GATA3 SCRT2 CEBPB CREB1 PRDM10 ATF2 DTHD1 LOC439933 ARAP2
GH04G036325 1.4 FANTOM5 Ensembl ENCODE 15.9 +44.4 44427 1.8 PKNOX1 EBF1 RELA POLR2A SCRT2 ETV6 RELB IKZF2 CREM CBFB ARAP2 DTHD1 LOC439933 LOC105374399
GH04G036254 1.3 Ensembl ENCODE dbSUPER 12 -25.8 -25791 2.7 TBP MAX BMI1 RELA YY1 CBX5 POLR2A EED RELB ETV6 LOC439933 DTHD1 ARAP2
GH04G036319 1.4 FANTOM5 Ensembl ENCODE 7.5 +38.8 38794 2.1 ASH2L ZBTB40 RELA ARID3A EED ETV6 RELB CREM IKZF2 SRF DTHD1 ARAP2 LOC105374399
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DTHD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DTHD1 Gene

Chromosome:
4
Start:
36,281,611 bp from pter
End:
36,345,756 bp from pter
Size:
64,146 bases
Orientation:
Plus strand

Genomic View for DTHD1 Gene

Genes around DTHD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DTHD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DTHD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DTHD1 Gene

Proteins for DTHD1 Gene

  • Protein details for DTHD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZMT9-DTHD1_HUMAN
    Recommended name:
    Death domain-containing protein 1
    Protein Accession:
    Q6ZMT9
    Secondary Accessions:
    • B2RXK4
    • B4E2N7

    Protein attributes for DTHD1 Gene

    Size:
    781 amino acids
    Molecular mass:
    88329 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for DTHD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DTHD1 Gene

Post-translational modifications for DTHD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for DTHD1 Gene

Domains & Families for DTHD1 Gene

Protein Domains for DTHD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for DTHD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DTHD1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for DTHD1 Gene

Function for DTHD1 Gene

genes like me logo Genes that share phenotypes with DTHD1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DTHD1 Gene

Localization for DTHD1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DTHD1 gene
Compartment Confidence
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for DTHD1 Gene

Pathways & Interactions for DTHD1 Gene

SuperPathways for DTHD1 Gene

No Data Available

Interacting Proteins for DTHD1 Gene

Gene Ontology (GO) - Biological Process for DTHD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with DTHD1: view

No data available for Pathways by source and SIGNOR curated interactions for DTHD1 Gene

Transcripts for DTHD1 Gene

mRNA/cDNA for DTHD1 Gene

Unigene Clusters for DTHD1 Gene

Death domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DTHD1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b
SP1: - - -
SP2: -
SP3:

Relevant External Links for DTHD1 Gene

GeneLoc Exon Structure for
DTHD1
ECgene alternative splicing isoforms for
DTHD1

Expression for DTHD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DTHD1 Gene

mRNA differential expression in normal tissues according to GTEx for DTHD1 Gene

This gene is overexpressed in Fallopian Tube (x5.4), Whole Blood (x4.8), Brain - Caudate (basal ganglia) (x4.8), Brain - Hypothalamus (x4.5), Cervix - Endocervix (x4.4), and Lung (x4.3).

Protein differential expression in normal tissues from HIPED for DTHD1 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for DTHD1 Gene



Protein tissue co-expression partners for DTHD1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DTHD1 Gene:

DTHD1

SOURCE GeneReport for Unigene cluster for DTHD1 Gene:

Hs.363407

Evidence on tissue expression from TISSUES for DTHD1 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with DTHD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DTHD1 Gene

Orthologs for DTHD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for DTHD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DTHD1 34 35
  • 99.06 (n)
cow
(Bos Taurus)
Mammalia DTHD1 34 35
  • 87.02 (n)
dog
(Canis familiaris)
Mammalia DTHD1 34 35
  • 85.65 (n)
mouse
(Mus musculus)
Mammalia Gm17384 34 35
  • 81.12 (n)
Dthd1 16
oppossum
(Monodelphis domestica)
Mammalia DTHD1 35
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves DTHD1 34 35
  • 63.78 (n)
lizard
(Anolis carolinensis)
Reptilia DTHD1 35
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101734689 34
  • 61.11 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100536769 34
  • 49.38 (n)
CU672227.1 35
  • 39 (a)
OneToOne
Species where no ortholog for DTHD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DTHD1 Gene

ENSEMBL:
Gene Tree for DTHD1 (if available)
TreeFam:
Gene Tree for DTHD1 (if available)

Paralogs for DTHD1 Gene

No data available for Paralogs for DTHD1 Gene

Variants for DTHD1 Gene

Sequence variations from dbSNP and Humsavar for DTHD1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs886037840 Uncertain significance 36,282,014(+) ATCAA(C/T)GTGTC nc-transcript-variant, reference, missense
rs1000013407 -- 36,308,029(+) GTTTC(C/T)TGATG intron-variant
rs1000026541 -- 36,306,692(+) TAAGC(A/G)GAATT intron-variant
rs10000657 -- 36,345,569(+) AAAAA(A/G)GCGAT nc-transcript-variant, utr-variant-3-prime
rs1000071937 -- 36,347,711(+) GTCAT(C/G)TTGAT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for DTHD1 Gene

Variant ID Type Subtype PubMed ID
esv1393189 CNV insertion 17803354
esv3304087 CNV mobile element insertion 20981092
esv3407491 CNV insertion 20981092
esv3569373 CNV loss 25503493
esv3600217 CNV loss 21293372
esv3600223 CNV loss 21293372
nsv4301 CNV insertion 18451855
nsv829907 CNV gain 17160897

Variation tolerance for DTHD1 Gene

Gene Damage Index Score: 10.73; 91.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DTHD1 Gene

Human Gene Mutation Database (HGMD)
DTHD1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
DTHD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DTHD1 Gene

Disorders for DTHD1 Gene

Relevant External Links for DTHD1

Genetic Association Database (GAD)
DTHD1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DTHD1

No disorders were found for DTHD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DTHD1 Gene

Publications for DTHD1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Autozygome-guided exome sequencing in retinal dystrophy patients reveals pathogenetic mutations and novel candidate disease genes. (PMID: 23105016) Abu-Safieh L. … Alkuraya F.S. (Genome Res. 2013) 3 64
  3. Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis. (PMID: 20802204) Baranzini S.E. … Pelletier D. (Brain 2010) 46 64
  4. The death domain superfamily in intracellular signaling of apoptosis and inflammation. (PMID: 17201679) Park H.H. … Wu H. (Annu. Rev. Immunol. 2007) 3 64
  5. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64

Products for DTHD1 Gene

Sources for DTHD1 Gene

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