Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DSCR9 Gene

Subcategory (RNA class) for DSCR9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DSCR9 Gene

  • Down Syndrome Critical Region 9 (Non-Protein Coding) 2 3 5
  • Down Syndrome Critical Region Gene 9 (Non-Protein Coding) 3
  • Non-Protein Coding RNA 38 2
  • NCRNA00038 3

External Ids for DSCR9 Gene

Previous GeneCards Identifiers for DSCR9 Gene

  • GC21P035170
  • GC21P037513
  • GC21P037502
  • GC21P038580
  • GC21P024056

Summaries for DSCR9 Gene

GeneCards Summary for DSCR9 Gene

DSCR9 (Down Syndrome Critical Region 9 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with DSCR9 include Down Syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCR9 Gene

Genomics for DSCR9 Gene

Regulatory Elements for DSCR9 Gene

Enhancers for DSCR9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F037206 1.2 Ensembl ENCODE 0.8 -0.5 -486 3.1 HDGF HDAC1 PKNOX1 TBL1XR1 WRNIP1 ARID4B ZNF48 ZNF143 ZNF207 ETV6 TTC3 PIGP DSCR3 DSCR9 GC21P037206
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DSCR9 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the DSCR9 gene promoter:

Genomic Location for DSCR9 Gene

Chromosome:
21
Start:
37,208,503 bp from pter
End:
37,221,736 bp from pter
Size:
13,234 bases
Orientation:
Plus strand

Genomic View for DSCR9 Gene

Genes around DSCR9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCR9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCR9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCR9 Gene

Proteins for DSCR9 Gene

  • Protein details for DSCR9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59020-DSCR9_HUMAN
    Recommended name:
    Down syndrome critical region protein 9
    Protein Accession:
    P59020
    Secondary Accessions:
    • B2R8P8

    Protein attributes for DSCR9 Gene

    Size:
    149 amino acids
    Molecular mass:
    16743 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DSCR9 Gene

Post-translational modifications for DSCR9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCR9 Gene

Domains & Families for DSCR9 Gene

Protein Domains for DSCR9 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for DSCR9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DSCR9: view

No data available for Gene Families and UniProtKB/Swiss-Prot for DSCR9 Gene

Function for DSCR9 Gene

Gene Ontology (GO) - Molecular Function for DSCR9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with DSCR9: view

Phenotypes for DSCR9 Gene

genes like me logo Genes that share phenotypes with DSCR9: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCR9 Gene

Localization for DSCR9 Gene

Gene Ontology (GO) - Cellular Components for DSCR9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with DSCR9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for DSCR9 Gene

Pathways & Interactions for DSCR9 Gene

SuperPathways for DSCR9 Gene

No Data Available

Interacting Proteins for DSCR9 Gene

Gene Ontology (GO) - Biological Process for DSCR9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with DSCR9: view

No data available for Pathways by source and SIGNOR curated interactions for DSCR9 Gene

Transcripts for DSCR9 Gene

Unigene Clusters for DSCR9 Gene

Down syndrome critical region gene 9 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCR9 Gene

No ASD Table

Relevant External Links for DSCR9 Gene

GeneLoc Exon Structure for
DSCR9
ECgene alternative splicing isoforms for
DSCR9

Expression for DSCR9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DSCR9 Gene

Protein differential expression in normal tissues from HIPED for DSCR9 Gene

This gene is overexpressed in Breast (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for DSCR9 Gene



Protein tissue co-expression partners for DSCR9 Gene

NURSA nuclear receptor signaling pathways regulating expression of DSCR9 Gene:

DSCR9

SOURCE GeneReport for Unigene cluster for DSCR9 Gene:

Hs.505159

mRNA Expression by UniProt/SwissProt for DSCR9 Gene:

P59020-DSCR9_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expression patterns with DSCR9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for DSCR9 Gene

Orthologs for DSCR9 Gene

Evolution for DSCR9 Gene

ENSEMBL:
Gene Tree for DSCR9 (if available)
TreeFam:
Gene Tree for DSCR9 (if available)

No data available for Orthologs for DSCR9 Gene

Paralogs for DSCR9 Gene

No data available for Paralogs for DSCR9 Gene

Variants for DSCR9 Gene

Sequence variations from dbSNP and Humsavar for DSCR9 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs111421996 -- 37,212,564(+) TTTTT(A/T)AATGA intron-variant
rs112090901 -- 37,207,139(+) ATTAC(C/G)TCAAC upstream-variant-2KB
rs112246553 -- 37,221,178(+) CTATC(A/G)CCAGC nc-transcript-variant
rs112325419 -- 37,217,897(+) CAACT(G/T)TGAAC intron-variant
rs112570853 -- 37,217,485(+) AAACA(C/T)GTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DSCR9 Gene

Variant ID Type Subtype PubMed ID
dgv70n68 CNV gain 17160897
nsv3512 CNV deletion 18451855

Relevant External Links for DSCR9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCR9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCR9 Gene

Disorders for DSCR9 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DSCR9 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
down syndrome
  • complete trisomy 21 syndrome
- elite association - COSMIC cancer census association via MalaCards
Search DSCR9 in MalaCards View complete list of genes associated with diseases

Relevant External Links for DSCR9

Human Genome Epidemiology (HuGE) Navigator
DSCR9
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DSCR9
genes like me logo Genes that share disorders with DSCR9: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DSCR9 Gene

Publications for DSCR9 Gene

  1. Identification of two novel primate-specific genes in DSCR. (PMID: 12168953) Takamatsu K. … Takeda T. (DNA Res. 2002) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  4. Digital quantification of human eye color highlights genetic association of three new loci. (PMID: 20463881) Liu F. … Kayser M. (PLoS Genet. 2010) 3 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for DSCR9 Gene

Sources for DSCR9 Gene

Content
Loading form....