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Aliases for DSCR4 Gene

Aliases for DSCR4 Gene

  • Down Syndrome Critical Region 4 2 3 5
  • Down Syndrome Critical Region Protein B 3 4
  • DSCRB 3 4
  • DCRB 3 4
  • Down Syndrome Critical Region Gene 4 3

External Ids for DSCR4 Gene

Previous GeneCards Identifiers for DSCR4 Gene

  • GC21M036003
  • GC21M038346
  • GC21M038348
  • GC21M038245
  • GC21M039323
  • GC21M024899

Summaries for DSCR4 Gene

Entrez Gene Summary for DSCR4 Gene

  • The gene is found in a region of chromosome 21 that has been linked to the pathogenesis of Down syndrome. This gene is transcribed from a bi-directional promoter located in an endogenous retrovirus. [provided by RefSeq, Jan 2015]

GeneCards Summary for DSCR4 Gene

DSCR4 (Down Syndrome Critical Region 4) is a Protein Coding gene. Diseases associated with DSCR4 include down syndrome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCR4 Gene

Genomics for DSCR4 Gene

Regulatory Elements for DSCR4 Gene

Promoters for DSCR4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around DSCR4 on UCSC Golden Path with GeneCards custom track

Genomic Location for DSCR4 Gene

Chromosome:
21
Start:
37,951,425 bp from pter
End:
38,121,360 bp from pter
Size:
169,936 bases
Orientation:
Minus strand

Genomic View for DSCR4 Gene

Genes around DSCR4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCR4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCR4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCR4 Gene

Proteins for DSCR4 Gene

  • Protein details for DSCR4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P56555-DSCR4_HUMAN
    Recommended name:
    Down syndrome critical region protein 4
    Protein Accession:
    P56555
    Secondary Accessions:
    • Q4VB31

    Protein attributes for DSCR4 Gene

    Size:
    118 amino acids
    Molecular mass:
    12955 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DSCR4 Gene

Proteomics data for DSCR4 Gene at MOPED

Post-translational modifications for DSCR4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DSCR4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DSCR4 Gene

Domains & Families for DSCR4 Gene

Protein Domains for DSCR4 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for DSCR4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DSCR4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for DSCR4 Gene

Function for DSCR4 Gene

genes like me logo Genes that share phenotypes with DSCR4: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCR4 Gene

Localization for DSCR4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DSCR4 Gene COMPARTMENTS Subcellular localization image for DSCR4 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for DSCR4 Gene

Pathways & Interactions for DSCR4 Gene

SuperPathways for DSCR4 Gene

No Data Available

Interacting Proteins for DSCR4 Gene

Gene Ontology (GO) - Biological Process for DSCR4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSCR4 Gene

Drugs & Compounds for DSCR4 Gene

No Compound Related Data Available

Transcripts for DSCR4 Gene

mRNA/cDNA for DSCR4 Gene

(3) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DSCR4 Gene

Down syndrome critical region gene 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DSCR4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1:
SP2: - - - -

Relevant External Links for DSCR4 Gene

GeneLoc Exon Structure for
DSCR4
ECgene alternative splicing isoforms for
DSCR4

Expression for DSCR4 Gene

mRNA expression in normal human tissues for DSCR4 Gene

mRNA differential expression in normal tissues according to GTEx for DSCR4 Gene

This gene is overexpressed in Testis (x49.6).

SOURCE GeneReport for Unigene cluster for DSCR4 Gene Hs.744972

mRNA Expression by UniProt/SwissProt for DSCR4 Gene

P56555-DSCR4_HUMAN
Tissue specificity: Mainly expressed in placenta.
genes like me logo Genes that share expression patterns with DSCR4: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for DSCR4 Gene

Orthologs for DSCR4 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DSCR4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DSCR4 36
  • 64 (a)
OneToOne
Species with no ortholog for DSCR4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DSCR4 Gene

ENSEMBL:
Gene Tree for DSCR4 (if available)
TreeFam:
Gene Tree for DSCR4 (if available)

Paralogs for DSCR4 Gene

No data available for Paralogs for DSCR4 Gene

Variants for DSCR4 Gene

Sequence variations from dbSNP and Humsavar for DSCR4 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs743294 -- 38,027,453(-) AAAAA(A/G)TGGAT intron-variant
rs748088 -- 38,026,548(+) TGTGA(A/G)AGTCA intron-variant
rs933128 -- 38,058,349(+) ACAGT(A/T)GAACC intron-variant
rs933129 -- 38,058,544(+) TCATC(C/T)TCCCT intron-variant
rs762148 -- 38,053,456(+) GGCAG(A/T)TCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DSCR4 Gene

Variant ID Type Subtype PubMed ID
esv2469159 CNV Insertion 19546169
nsv513573 CNV Insertion 21212237
esv2617743 CNV Deletion 19546169
esv4330 CNV Deletion 18987735
esv2723414 CNV Deletion 23290073
esv1009477 CNV Deletion 20482838
esv1674631 CNV Deletion 17803354
nsv834097 CNV Gain 17160897

Variation tolerance for DSCR4 Gene

Residual Variation Intolerance Score: 58.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.13; 22.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DSCR4 Gene

HapMap Linkage Disequilibrium report
DSCR4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DSCR4 Gene

Disorders for DSCR4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DSCR4 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
down syndrome
  • complete trisomy 21 syndrome
- elite association - COSMIC cancer census association via MalaCards
Search DSCR4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for DSCR4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DSCR4
genes like me logo Genes that share disorders with DSCR4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DSCR4 Gene

Publications for DSCR4 Gene

  1. A novel gene isolated from human placenta located in Down syndrome critical region on chromosome 21. (PMID: 9455479) Nakamura A. … Sakaki Y. (DNA Res. 1997) 2 3 4 67
  2. Hypomethylated DSCR4 is a placenta-derived epigenetic marker for trisomy 21. (PMID: 21268042) Du Y. … Ma D. (Prenat. Diagn. 2011) 3
  3. Analysis of the promoter region of human placenta-specific DSCR4 gene. (PMID: 18086574) Asai S. … Shimizu Y. (Biochim. Biophys. Acta 2008) 3
  4. Transcription of two human genes from a bidirectional endogenous retrovirus promoter. (PMID: 16288839) Dunn C.A. … Mager D.L. (Gene 2006) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for DSCR4 Gene

Sources for DSCR4 Gene

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