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Aliases for DSCAM-IT1 Gene

Subcategory (RNA class) for DSCAM-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for DSCAM-IT1 Gene

  • DSCAM Intronic Transcript 1 2 3 5
  • DSCAM Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Zag4 3

External Ids for DSCAM-IT1 Gene

Previous GeneCards Identifiers for DSCAM-IT1 Gene

  • GC00U933773
  • GC21M041988

Summaries for DSCAM-IT1 Gene

GeneCards Summary for DSCAM-IT1 Gene

DSCAM-IT1 (DSCAM Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCAM-IT1 Gene

Genomics for DSCAM-IT1 Gene

Regulatory Elements for DSCAM-IT1 Gene

Enhancers for DSCAM-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F040603 1.1 FANTOM5 0.3 +27.2 27225 0.3 DSCAM DSCAM-IT1 ENSG00000207147
GH21F040592 0.4 FANTOM5 0.3 +37.6 37646 0.3 GATA3 DSCAM DSCAM-IT1 ENSG00000207147
GH21F040685 0.5 FANTOM5 0.2 -55.3 -55317 0.3 ZKSCAN8 ZNF488 ZNF48 ZKSCAN1 ZNF785 DSCAM DSCAM-IT1
GH21F040750 0.5 FANTOM5 0.1 -120.1 -120136 0.2 MNT DSCAM DSCAM-IT1
GH21F040761 0.6 FANTOM5 0.1 -130.8 -130796 0.4 PCP4 DSCAM DSCAM-IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DSCAM-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DSCAM-IT1 Gene

40,615,378 bp from pter
40,630,767 bp from pter
15,390 bases
Minus strand

Genomic View for DSCAM-IT1 Gene

Genes around DSCAM-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCAM-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAM-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCAM-IT1 Gene

Proteins for DSCAM-IT1 Gene

Post-translational modifications for DSCAM-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCAM-IT1 Gene

Domains & Families for DSCAM-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSCAM-IT1 Gene

Function for DSCAM-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-IT1 Gene

Localization for DSCAM-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DSCAM-IT1 Gene

Pathways & Interactions for DSCAM-IT1 Gene

SuperPathways for DSCAM-IT1 Gene

No Data Available

Interacting Proteins for DSCAM-IT1 Gene

Gene Ontology (GO) - Biological Process for DSCAM-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for DSCAM-IT1 Gene

Transcripts for DSCAM-IT1 Gene

mRNA/cDNA for DSCAM-IT1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DSCAM-IT1 Gene

DSCAM intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAM-IT1 Gene

No ASD Table

Relevant External Links for DSCAM-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DSCAM-IT1 Gene

mRNA expression in normal human tissues for DSCAM-IT1 Gene

SOURCE GeneReport for Unigene cluster for DSCAM-IT1 Gene:

genes like me logo Genes that share expression patterns with DSCAM-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DSCAM-IT1 Gene

Orthologs for DSCAM-IT1 Gene

Evolution for DSCAM-IT1 Gene

Gene Tree for DSCAM-IT1 (if available)
Gene Tree for DSCAM-IT1 (if available)

No data available for Orthologs for DSCAM-IT1 Gene

Paralogs for DSCAM-IT1 Gene

No data available for Paralogs for DSCAM-IT1 Gene

Variants for DSCAM-IT1 Gene

Sequence variations from dbSNP and Humsavar for DSCAM-IT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs10460680 -- 40,624,722(+) AAGAA(A/G)TATTA intron-variant
rs111213037 -- 40,620,304(+) AAAGA(A/G)AGAGA intron-variant
rs111234576 -- 40,630,870(+) GGGAG(C/T)TGGGG intron-variant, upstream-variant-2KB
rs111245453 -- 40,618,664(+) CTGAG(-/AAA)AAAAA intron-variant, nc-transcript-variant
rs111453557 -- 40,627,218(+) AGAAG(A/T)GAATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DSCAM-IT1 Gene

Variant ID Type Subtype PubMed ID
esv1557821 CNV insertion 17803354
esv1934003 CNV deletion 18987734
esv2723467 CNV deletion 23290073
esv3647044 CNV loss 21293372
nsv1121591 CNV deletion 24896259
nsv1142331 CNV tandem duplication 24896259

Relevant External Links for DSCAM-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAM-IT1 Gene

Disorders for DSCAM-IT1 Gene

Relevant External Links for DSCAM-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for DSCAM-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSCAM-IT1 Gene

Publications for DSCAM-IT1 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for DSCAM-IT1 Gene

Sources for DSCAM-IT1 Gene

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