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Aliases for DSCAM-AS1 Gene

Subcategory (RNA class) for DSCAM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DSCAM-AS1 Gene

  • DSCAM Antisense RNA 1 2 3 5
  • DSCAM Antisense RNA 1 (Non-Protein Coding) 2 3
  • M41 3

External Ids for DSCAM-AS1 Gene

Previous GeneCards Identifiers for DSCAM-AS1 Gene

  • GC21P041757

Summaries for DSCAM-AS1 Gene

GeneCards Summary for DSCAM-AS1 Gene

DSCAM-AS1 (DSCAM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCAM-AS1 Gene

Genomics for DSCAM-AS1 Gene

Regulatory Elements for DSCAM-AS1 Gene

Enhancers for DSCAM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G040343 1 dbSUPER 12.3 -38.0 -37967 2.4 MLX ARID4B DMAP1 ZNF48 SLC30A9 FOS MXD4 MIER2 PPARG KAT8 DSCAM-AS1 MIR4760
GH21G040378 1 dbSUPER 0.7 -3.2 -3242 2.1 FOXA2 PKNOX1 ARID4B SIN3A ZNF207 ZNF263 SP5 ZNF488 TSHZ1 NFIL3 DSCAM-AS1 MIR4760
GH21G040380 0.9 dbSUPER 0.7 -1.0 -1021 2.2 PKNOX1 NFIB SIN3A BMI1 RAD21 ZBTB40 ZBTB7B ELK1 ZNF207 FOS DSCAM-AS1 MIR4760
GH21G040383 0.8 dbSUPER 0.7 +0.8 773 1.2 GTF2F1 CTCF HDGF SUZ12 SIN3A RAD21 ZBTB7B E2F1 GATA3 POLR2A DSCAM-AS1 LOC105369294
GH21G040384 1 dbSUPER 0.4 +5.7 5710 8.6 PKNOX1 FOXA2 ZFP64 SIN3A ARID4B YY1 ZNF121 FOS DEK ZNF263 ENSG00000207147 DSCAM-AS1 LOC105369294
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DSCAM-AS1 Gene

Chromosome:
21
Start:
40,383,083 bp from pter
End:
40,385,358 bp from pter
Size:
2,276 bases
Orientation:
Plus strand

Genomic View for DSCAM-AS1 Gene

Genes around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCAM-AS1 Gene

Proteins for DSCAM-AS1 Gene

Post-translational modifications for DSCAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCAM-AS1 Gene

Domains & Families for DSCAM-AS1 Gene

Gene Families for DSCAM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DSCAM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSCAM-AS1 Gene

Function for DSCAM-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-AS1 Gene

Localization for DSCAM-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DSCAM-AS1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for DSCAM-AS1 Gene

Pathways & Interactions for DSCAM-AS1 Gene

SuperPathways for DSCAM-AS1 Gene

No Data Available

Interacting Proteins for DSCAM-AS1 Gene

Gene Ontology (GO) - Biological Process for DSCAM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSCAM-AS1 Gene

Drugs & Compounds for DSCAM-AS1 Gene

No Compound Related Data Available

Transcripts for DSCAM-AS1 Gene

mRNA/cDNA for DSCAM-AS1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DSCAM-AS1 Gene

DSCAM antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAM-AS1 Gene

No ASD Table

Relevant External Links for DSCAM-AS1 Gene

GeneLoc Exon Structure for
DSCAM-AS1
ECgene alternative splicing isoforms for
DSCAM-AS1

Expression for DSCAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSCAM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DSCAM-AS1 Gene

This gene is overexpressed in Prostate (x46.0).

SOURCE GeneReport for Unigene cluster for DSCAM-AS1 Gene:

Hs.667053
genes like me logo Genes that share expression patterns with DSCAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-AS1 Gene

Orthologs for DSCAM-AS1 Gene

Evolution for DSCAM-AS1 Gene

ENSEMBL:
Gene Tree for DSCAM-AS1 (if available)
TreeFam:
Gene Tree for DSCAM-AS1 (if available)

No data available for Orthologs for DSCAM-AS1 Gene

Paralogs for DSCAM-AS1 Gene

No data available for Paralogs for DSCAM-AS1 Gene

Variants for DSCAM-AS1 Gene

Sequence variations from dbSNP and Humsavar for DSCAM-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000587885 -- 40,382,028(+) AGTCA(C/G)AGCAA intron-variant, upstream-variant-2KB
rs1001014630 -- 40,381,645(+) GTTTG(A/T)CTACC intron-variant, upstream-variant-2KB
rs1001407202 -- 40,381,228(+) GGGTG(G/T)GGCAC intron-variant, upstream-variant-2KB
rs1002388786 -- 40,382,238(+) TAGGG(A/G)GACTC intron-variant, upstream-variant-2KB
rs1002421315 -- 40,382,463(+) ATAAT(A/G)GGAAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DSCAM-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv520586 CNV loss 19592680
nsv528658 CNV loss 19592680
nsv834100 CNV gain 17160897

Relevant External Links for DSCAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAM-AS1 Gene

Disorders for DSCAM-AS1 Gene

Relevant External Links for DSCAM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DSCAM-AS1

No disorders were found for DSCAM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSCAM-AS1 Gene

Publications for DSCAM-AS1 Gene

  1. The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. (PMID: 27666543) Niknafs Y.S. … Feng F.Y. (Nat Commun 2016) 2 3 64
  2. Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer. (PMID: 26621851) Miano V. … De Bortoli M. (Oncotarget 2016) 3 64
  3. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. Identification of mRNAs differentially-expressed between benign and malignant breast tumour cells. (PMID: 12177779) Liu D. … Barraclough R. (Br. J. Cancer 2002) 3 64

Products for DSCAM-AS1 Gene

Sources for DSCAM-AS1 Gene

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