Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DSCAM-AS1 Gene

Subcategory (RNA class) for DSCAM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for DSCAM-AS1 Gene

  • DSCAM Antisense RNA 1 2 3 5
  • DSCAM Antisense RNA 1 (Non-Protein Coding) 2 3
  • M41 3

External Ids for DSCAM-AS1 Gene

Previous GeneCards Identifiers for DSCAM-AS1 Gene

  • GC21P041757

Summaries for DSCAM-AS1 Gene

GeneCards Summary for DSCAM-AS1 Gene

DSCAM-AS1 (DSCAM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DSCAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCAM-AS1 Gene

Genomics for DSCAM-AS1 Gene

Regulatory Elements for DSCAM-AS1 Gene

Enhancers for DSCAM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H040343 0.4 dbSUPER 12.3 -38.0 -37967 2.4 POLR2A CREB1 DSCAM-AS1 MIR4760
GH21H040380 0.9 dbSUPER 0.7 -1.0 -1021 2.2 PKNOX1 NFIB SIN3A BMI1 ZBTB40 ZBTB7B ELK1 ZNF207 FOS RCOR1 DSCAM-AS1 MIR4760
GH21H040383 0.8 dbSUPER 0.7 +0.8 773 1.2 CTCF GTF2F1 HDGF SUZ12 DDX20 SIN3A ZBTB7B RFX5 E2F1 GATA3 DSCAM-AS1 LOC105369294
GH21H040384 0.9 dbSUPER 0.4 +5.7 5710 8.6 SIN3A ZBTB40 RAD21 EGR1 FOS EGR2 SMARCA5 ELF1 GATAD2B ZNF592 ENSG00000207147 DSCAM-AS1 LOC105369294
GH21H040378 0.5 dbSUPER 0.7 -3.2 -3242 2.1 GATA3 ZNF687 JUND ZNF207 ZKSCAN1 DSCAM-AS1 MIR4760
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSCAM-AS1 Gene

Genomic Locations for DSCAM-AS1 Gene
2,276 bases
Plus strand

Genomic View for DSCAM-AS1 Gene

Genes around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCAM-AS1 Gene

Proteins for DSCAM-AS1 Gene

Post-translational modifications for DSCAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCAM-AS1 Gene

Domains & Families for DSCAM-AS1 Gene

Gene Families for DSCAM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DSCAM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSCAM-AS1 Gene

Function for DSCAM-AS1 Gene

Phenotypes From GWAS Catalog for DSCAM-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-AS1 Gene

Localization for DSCAM-AS1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DSCAM-AS1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAM-AS1 Gene

Pathways & Interactions for DSCAM-AS1 Gene

SuperPathways for DSCAM-AS1 Gene

No Data Available

Interacting Proteins for DSCAM-AS1 Gene

Gene Ontology (GO) - Biological Process for DSCAM-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for DSCAM-AS1 Gene

Drugs & Compounds for DSCAM-AS1 Gene

No Compound Related Data Available

Transcripts for DSCAM-AS1 Gene

mRNA/cDNA for DSCAM-AS1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DSCAM-AS1 Gene

DSCAM antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAM-AS1 Gene

No ASD Table

Relevant External Links for DSCAM-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DSCAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSCAM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DSCAM-AS1 Gene

This gene is overexpressed in Prostate (x46.0).

SOURCE GeneReport for Unigene cluster for DSCAM-AS1 Gene:

genes like me logo Genes that share expression patterns with DSCAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-AS1 Gene

Orthologs for DSCAM-AS1 Gene

Evolution for DSCAM-AS1 Gene

Gene Tree for DSCAM-AS1 (if available)
Gene Tree for DSCAM-AS1 (if available)

No data available for Orthologs for DSCAM-AS1 Gene

Paralogs for DSCAM-AS1 Gene

No data available for Paralogs for DSCAM-AS1 Gene

Variants for DSCAM-AS1 Gene

Sequence variations from dbSNP and Humsavar for DSCAM-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000587885 -- 40,382,028(+) AGTCA(C/G)AGCAA intron-variant, upstream-variant-2KB
rs1001014630 -- 40,381,645(+) GTTTG(A/T)CTACC intron-variant, upstream-variant-2KB
rs1001407202 -- 40,381,228(+) GGGTG(G/T)GGCAC intron-variant, upstream-variant-2KB
rs1002388786 -- 40,382,238(+) TAGGG(A/G)GACTC intron-variant, upstream-variant-2KB
rs1002421315 -- 40,382,463(+) ATAAT(A/G)GGAAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DSCAM-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv520586 CNV loss 19592680
nsv528658 CNV loss 19592680
nsv834100 CNV gain 17160897

Relevant External Links for DSCAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAM-AS1 Gene

Disorders for DSCAM-AS1 Gene

Relevant External Links for DSCAM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for DSCAM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSCAM-AS1 Gene

Publications for DSCAM-AS1 Gene

  1. The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. (PMID: 27666543) Niknafs YS … Feng FY (Nature communications 2016) 2 3 60
  2. Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer. (PMID: 26621851) Miano V … De Bortoli M (Oncotarget 2016) 3 60
  3. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3 60
  4. Identification of mRNAs differentially-expressed between benign and malignant breast tumour cells. (PMID: 12177779) Liu D … Barraclough R (British journal of cancer 2002) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for DSCAM-AS1 Gene

Sources for DSCAM-AS1 Gene

Loading form....