DRAP1 Gene
protein-coding GIFtS: 52
GCID: GC11P065686
|
|
DR1-associated protein 1 (negative cofactor 2 alpha)
| |
Aliases
for DRAP1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| DR1-Associated Protein 1 (Negative Cofactor 2 Alpha)1 2 | | NC2-Alpha1 | | Negative Co-Factor 2-Alpha2 3 | | Dr1-Associated Corepressor2 | | Negative Cofactor 2 Alpha2 | | Dr1-Associated Protein 13 |
Export aliases for DRAP1 gene to outside databasesPrevious GC identifers: GC11P068221 GC11P067368 GC11P065936 GC11P065462 GC11P065443 GC11P062013 |
Summaries
for DRAP1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for DRAP1:
Transcriptional repression is a general mechanism for regulating transcriptional initiation in organisms ranging fromyeast to humans. Accurate initiation of transcription from eukaryotic protein-encoding genes requires the assembly ofa large multiprotein complex consisting of RNA polymerase II and general transcription factors such as TFIIA, TFIIB,and TFIID. DR1 is a repressor that interacts with the TATA-binding protein (TBP) of TFIID and prevents the formationof an active transcription complex by precluding the entry of TFIIA and/or TFIIB into the preinitiation complex. Theprotein encoded by this gene is a corepressor of transcription that interacts with DR1 to enhance DR1-mediatedrepression. The interaction between this corepressor and DR1 is required for corepressor function and appears tostabilize the TBP-DR1-DNA complex. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: NC2A_HUMAN, Q14919Function: The association of the DR1/DRAP1 heterodimer with TBP results in a functional repression of both activatedand basal transcription of class II genes. This interaction precludes the formation of a transcription-competentcomplex by inhibiting the association of TFIIA and/or TFIIB with TBP. Can bind to DNA on its own
Gene Wiki entry for DRAP1
|
Genomic Views
for DRAP1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_167190.1
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the DRAP1 gene promoter:
CRE-BP1 TBP STAT1 p53 ATF-2 p300 C/EBPalpha
Other transcription factors
Search SABiosciences Chromatin IP Primers for DRAP1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DRAP1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q13.3 Ensembl cytogenetic band: 11q13.1 HGNC cytogenetic band: 11q13DRAP1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P065686: view genomic region
(about GC identifiers)
Start:
|
65,686,728 bp from pter |
End:
|
65,689,048 bp from pter |
Size:
|
2,321 bases |
Orientation:
|
plus strand |
|
Proteins
for DRAP1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NC2A_HUMAN, Q14919 (See
protein sequence)Recommended Name: Dr1-associated corepressor Size: 205 amino acids; 22350 Da
Subunit: Heterodimer with DR1. Binds BTAF1
Subcellular location: Nucleus (Potential)
1 PDB 3D structure from  and Proteopedia  for DRAP1:1JFI (3D)
Secondary accessions: Q13448Alternative splicing: 2 isoforms: Q14919-1 Q14919-2 Explore the universe of human proteins at neXtProt for DRAP1: NX_Q14919
Post-translational modifications:
Phosphorylation reduces DNA binding, but has no effect on heterodimerization and TBP binding1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q14919
DRAP1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_006433.2
ENSEMBL proteins: ENSP00000307850 ENSP00000437225 ENSP00000366190 ENSP00000437287 ENSP00000432445
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- |
DRAP1 for ontologies About GeneDecksing
DRAP1 Antibody Products:
Assay Products for DRAP1: |
Protein
Domains /
Families
for DRAP1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
DRAP1 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q14919ProtoNet protein and cluster: Q14919 1 Blocks protein family: IPB003958 Transcription factor CBF/NF-Y/archaeal histone
UniProtKB/Swiss-Prot: NC2A_HUMAN, Q14919Similarity: Belongs to the NC2 alpha/DRAP1 familySimilarity: Contains 1 histone-fold domain |
Function
for DRAP1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: NC2A_HUMAN, Q14919Function: The association of the DR1/DRAP1 heterodimer with TBP results in a functional repression of both activatedand basal transcription of class II genes. This interaction precludes the formation of a transcription-competentcomplex by inhibiting the association of TFIIA and/or TFIIB with TBP. Can bind to DNA on its own Genatlas biochemistry entry for DRAP1:Dr1-associated polypeptide,corepressor of transcription,expressed with higher levels in tissues with low mitotic index
Clone
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Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table
DRAP1 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for DRAP1:
Animal Models:
Mouse knock-out Drap1tm1Mms for DRAP1
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Drap1):
DRAP1 for phenotypes About GeneDecksing
|
Pathways & Interactions
for DRAP1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for DRAP1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/35 Interacting proteins for DRAP1 (Q149192, 3 ENSP000003078504) via UniProtKB, MINT, STRING, and/or I2D (see all 35)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
IEA | -- | | GO:0006351 | transcription, DNA-dependent |
IEA | -- |
DRAP1 for ontologies About GeneDecksing
|
Drugs & Compounds
for DRAP1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DRAP1
Search CenterWatch for drugs/clinical trials and news about DRAP1 / NC2A
|
Transcripts
for DRAP1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for DRAP1 gene: NM_006442.3 Unigene Cluster for DRAP1: DR1-associated protein 1 (negative cofactor 2 alpha) Hs.356742 [show with all ESTs]Unigene Representative Sequence: BF9691329 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000312515(uc001ogj.2) ENST00000525501 ENST00000376991 ENST00000531121
ENST00000527119 ENST00000532933 ENST00000530791 ENST00000534333 ENST00000525190
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DRAP1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
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Additional cDNA sequence: BC010025.2 X96506.1 6 DOTS entries: DT.415022 DT.100780789 DT.97851987 DT.120759072 DT.102827508 DT.92427048 24/266 AceView cDNA sequences (see all 266): CF129614 F37452 BU620949 AI078778 CA950374 BM811048 CF130604 AI375209 CA422057 BQ687294 BG395819 BM760340 CA434302 BM562037 CK824883 BU174094 BU169803 BM841076 BU615642 AA372238 BM559850 BM988095 BM685234 BG114667
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for DRAP1 About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b |
|---|
|
| SP1: | | | | | | | - | | | | | | - | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | - | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | - | | | | | | - | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | - | | | | | | - | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for DRAP1
|
Expression
for DRAP1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DRAP1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GATGGGGACA
About this image
See DRAP1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for DRAP1
SOURCE GeneReport for Unigene cluster: Hs.356742
UniProtKB/Swiss-Prot: NC2A_HUMAN, Q14919Tissue specificity: Ubiquitous. Highly expressed in adult testis, heart, skeletal muscle, pancreas and brain, and infetal brain, liver and kidney
SABiosciences Custom PCR Arrays for DRAP1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DRAP1
Browse OriGene validated miRNA SYBR primer pairs
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Orthologs
for DRAP1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for DRAP1 gene from 7/23 species (see all 23) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Drap11 , 5 |
Dr1 associated protein 1 (negative cofactor 2 alpha)1, 5 |
88.13(n)1
93.17(a)1 |
|
19 (4.32 cM)5
665561 NM_024176.11 NP_077138.11
54228055 |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.237372 |
Xenopus laevis transcribed sequence with weak similarity more |
75.49(n) |
|
BJ617281.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
Dr.7192 |
Danio rerio mRNA similar to Dr1 associated protein more |
79.96(n) |
|
BC045853.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
NC2alpha3 |
negative regulation of transcriptional
pre-initiation more |
64(a) |
|
57F7 -- |
worm
(Caenorhabditis elegans) |
Secernentea |
drap-16 |
Protein DRAP-1, isoform a |
13(a) |
1 ↔ 1 |
V(9730087-9734003) |
thale cress
(Arabidopsis thaliana) |
eudicotyledons |
AT5G194901 |
histone 2A domain-containing protein |
47.65(n)
47.24(a) |
|
832069 NM_121954.2 NP_197450.2 |
rice
(Oryza sativa) |
Liliopsida |
---- |
histone-like transcription factor and archaeal his...histone-like transcription factor and archaeal his... |
22(a)19(a) |
many → 1many → 1 |
11(19559890-19563575) 5(24213237-24218129) |
ENSEMBL Gene Tree for DRAP1 (if available)
TreeFam Gene Tree for DRAP1 (if available) |
Paralogs
for DRAP1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for DRAP1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for DRAP1 (65686728 - 65689048 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for DRAP1
1 CNV: 3855 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DRAP1 |
|
Disorders
/ Diseases
for DRAP1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
DRAP1 for disorders About GeneDecksing
OMIM gene information: 602289
OMIM disorders: --
2  diseases for DRAP1: About MalaCardsataxia hypoxia
Export disorders for DRAP1 gene to outside databases
|
Publications
for DRAP1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for DRAP1 gene, integrated from 9 sources (see all 32):
(articles sorted by number of sources associating them with DRAP1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Requirement of a corepressor for Dr1-mediated repression of transcription. (PubMed id 8608938)1, 2, 3 Mermelstein F....Reinberg D. (1996)
- NC2alpha interacts with BTAF1 and stimulates its ATP-dependent association with TATA-binding protein. (PubMed id 15509807)1, 2, 9 Klejman M.P.... Timmers H.T.M. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. (PubMed id 11461703)1, 2 Kamada K.... Burley S.K. (2001)
- A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains. (PubMed id 8670811)1, 2 Goppelt A.R.... Meisterernst M. (1996)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (2011)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
|
External Searches for DRAP1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing DRAP1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing DRAP1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DRAP1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for DRAP1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for DRAP1 gene:
Search GeneIP for patents involving DRAP1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DRAP1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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