DRAM1 Gene
protein-coding GIFtS : 48
GCID: GC12 P102271
DNA-damage regulated autophagy modulator 1
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Aliasesfor DRAM1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases DNA-Damage Regulated Autophagy Modulator 1 1 2 DRAM1 2 3 Damage-Regulated Autophagy Modulator2 3 FLJ112591 DNA Damage-Regulated Autophagy Modulator Protein 12
Export aliases for DRAM1 gene to outside databases Previous GC identifers: GC12P100798 GC12P099330
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Summariesfor DRAM1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for DRAM1 : This gene is regulated as part of the p53 tumor suppressor pathway. The gene encodes a lysosomal membrane protein that is required for the induction of autophagy by the pathway. Decreased transcriptional expression of this gene is associated with various tumors. This gene has a pseudogene on chromosome 4. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: DRAM1_HUMAN, Q8N682 Function : Lysosomal modulator of autophagy that plays a central role in p53/TP53-mediated apoptosis. Not involved inp73/TP73-mediated autophagy
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Genomic Viewsfor DRAM1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_029419.12 Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for DRAM1 Other transcription factors Search SABiosciences Chromatin IP Primers for DRAM1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DRAM1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q23.2 Ensembl cytogenetic band: 12q23.2 HGNC cytogenetic band: 12q23.2 DRAM1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P102271: view genomic region
(about GC identifiers )
Start:
102,271,105 bp from pter
End:
102,405,908 bp from pter
Size:
134,804 bases
Orientation:
plus strand
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Proteinsfor DRAM1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DRAM1_HUMAN, Q8N682 (See
protein sequence )Recommended Name: DNA damage-regulated autophagy modulator protein 1 Size : 238 amino acids; 26253 Da
Subcellular location : Lysosome membrane; Multi-pass membrane protein
Sequence caution : Sequence=BAA92091.1; Type=Erroneous initiation;
Secondary accessions : Q7L3E3 Q9NUN1Explore the universe of human proteins at neXtProt for DRAM1: NX_Q8N682 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8N682 DRAM1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_060840.2 ENSEMBL proteins: ENSP00000258534 ENSP00000445827 ENSP00000448075 ENSP00000447171 ENSP00000447906 Human Recombinant Protein Products for DRAM1: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005765 lysosomal membrane
IEA -- GO:0016021 integral to membrane
IEA --
DRAM1 for ontologies About GeneDecksing DRAM1 Antibody Products: Assay Products for DRAM1:
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Protein
Domains / Familiesfor DRAM1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DRAM1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q8N682 ProtoNet protein and cluster: Q8N682
UniProtKB/Swiss-Prot: DRAM1_HUMAN, Q8N682 Similarity : Belongs to the DRAM/TMEM150 family
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Functionfor DRAM1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: DRAM1_HUMAN, Q8N682 Function : Lysosomal modulator of autophagy that plays a central role in p53/TP53-mediated apoptosis. Not involved inp73/TP73-mediated autophagy Induction : By p53/TP53 and p73/TP73. Directly activated by p53/TP53. Significantly down-regulated in tumor cell linesby methylation-dependent transcriptional silencing Phenotypes: 1 GenomeRNAi human phenotype for DRAM1 :
Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DRAM1 (NM_018370 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DRAM1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DRAM1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DRAM1
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Pathways & Interactionsfor DRAM1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DRAM1 Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
DRAM1 for ontologies About GeneDecksing
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Drugs & Compoundsfor DRAM1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for DRAM1 Search CenterWatch for drugs/clinical trials and news about DRAM1
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Transcriptsfor DRAM1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for DRAM1 gene: NM_018370.2 Unigene Cluster for DRAM1:
DNA-damage regulated autophagy modulator 1 Hs.525634 [show with all ESTs ] Unigene Representative Sequence: NM_018370 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000258534 (uc001tix.3 uc010svv.2 ) ENST00000544152 ENST00000551403 ENST00000549365 ENST00000549066 ENST00000546729 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DRAM1 (NM_018370 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DRAM1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DRAM1
Additional cDNA sequence: AK002121.1 AK094923.1 AK297785.1 BC013773.1 BC018435.1
9 DOTS entries : DT.213396 DT.86835766
DT.95353736 DT.99929399 DT.121152169 DT.121152337 DT.99938311 DT.100750270 DT.100750272 24/145 AceView cDNA sequences (see all 145 ):
BG250630 AU157697 AI304821 CA419796 BM763554 AA457689 CA421413 AI148797 BM562526 AW449733 BQ671657 BP352620 BE856855 BC018435 AW779136 BQ669342 BP344183 CA307951 CB141637 BM915337 BM915334 BM991570 BQ641768 AI927792 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for DRAM1 About this scheme ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 SP1 :                 SP2 :         -        
ECgene alternative splicing isoforms for DRAM1
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Expression for DRAM1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section DRAM1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image DRAM1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See DRAM1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for DRAM1 SOURCE GeneReport for Unigene cluster: Hs.525634 SABiosciences Expression via Pathway-Focused PCR Array including DRAM1 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DRAM1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat DRAM1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DRAM1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DRAM1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DRAM1
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Orthologsfor DRAM1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for DRAM1 gene from 3/11 species (see all 11 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
DRAM11
DNA-damage regulated autophagy modulator 1
72.57(n) 71.31(a)
 
418095 XM_001234898.2 XP_001234899.2
lizard (Anolis carolinensis)
Reptilia
DRAM16
--
65(a)
1 ↔ 1
5(17463545-17473297)
zebrafish (Danio rerio)
Actinopterygii
dram11
DNA-damage regulated autophagy modulator 1
55.27(n) 47.86(a)
 
450028 NM_001006049.1 NP_001006049.1
ENSEMBL Gene Tree for DRAM1 (if available)TreeFam Gene Tree for DRAM1 (if available)
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Paralogsfor DRAM1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for DRAM1 gene DRAM2 2 TMEM150A 2 TMEM150C 2 TMEM150B 2 1 SIMAP similar gene for DRAM1 using alignment to 4 protein entries: DRAM1_HUMAN (see all proteins ):DRAM2
DRAM1 for paralogs About GeneDecksing
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Genomic Variantsfor DRAM1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for DRAM1 (102271105 - 102405908 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for DRAM1 1 CNV : 101607 2 Indels : 41268 39928
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DRAM1
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Disorders
/ Diseasesfor DRAM1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
DRAM1 for disorders About GeneDecksing
OMIM gene information: 610776
OMIM disorders : --1 disease for DRAM1 : About MalaCards sarcoma Export disorders for DRAM1 gene to outside databases
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Publicationsfor DRAM1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for DRAM1 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with DRAM1) Utopia : connect your pdf to the dynamic world of online information
DRAM, a p53-induced modulator of autophagy, is critical for apoptosis. (PubMed id 16839881) 1 , 2 , 3 Crighton D.... Ryan K.M. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Inhibition of damage-regulated autophagy modulator-1 ( DRAM-1) impairs neutrophil differentiation of NB4 APL cells. (PubMed id 22981223) 1 Humbert M....Tschan M.P. (2012) DRAM-1 encodes multiple isoforms that regulate autopha gy. (PubMed id 22082963) 1 Mah L.Y....Ryan K.M. (2012) Downregulation of VRK1 by p53 in response to DNA dama ge is mediated by the autophagic pathway. (PubMed id 21386980) 1 Valbuena A....Lazo P.A. (2011) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) c-Jun NH2-terminal kinase activation is essential for DRAM-dependent induction of autophagy and apoptosis in 2-methoxyestradiol-trea ted Ewing sarcoma cells. (PubMed id 19706754) 1 Lorin S....Djavaheri-Mergny M. (2009) Analysis of DRAM-related proteins reveals evolutionar ily conserved and divergent roles in the control of autophagy. (PubMed id 19556885) 1 O'Prey J....Ryan K.M. (2009) The direct p53 target gene, FLJ11259/DRAM, is a member of a novel family of transmembrane proteins. (PubMed id 17397945) 1 Kerley-Hamilton J.S....Spinella M.J. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007)
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External Searches for DRAM1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DRAM1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DRAM1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing DRAM1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for DRAM1 gene: Search GeneIP for patents involving DRAM1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DRAM1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
OriGene Antibodies for DRAM1 OriGene shRNA RFP for DRAM1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for DRAM1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DRAM1 OriGene Protein Over-expression Lysate for DRAM1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for DRAM1 OriGene 3'-UTR Clone for DRAM1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DRAM1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for DRAM1 OriGene Custom Protein Services for DRAM1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DRAM1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DRAM1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DRAM1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat DRAM1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DRAM1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DRAM1
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DRAM1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DRAM1
ThermoFisher Antibodies for DRAM1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DRAM1
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Aliases for DRAM1
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