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Aliases for DPYSL2 Gene

Aliases for DPYSL2 Gene

  • Dihydropyrimidinase Like 2 2 3 5
  • Unc-33-Like Phosphoprotein 2 3 4
  • CRMP-2 3 4
  • ULIP-2 3 4
  • CRMP2 3 4
  • DRP-2 3 4
  • ULIP2 3 4
  • N2A3 3 4
  • Collapsin Response Mediator Protein HCRMP-2 3
  • Dihydropyrimidinase-Related Protein 2 3
  • Collapsin Response Mediator Protein 2 4
  • Dihydropyrimidinase-Like 2 2
  • DHPRP2 3
  • DRP2 3

External Ids for DPYSL2 Gene

Previous GeneCards Identifiers for DPYSL2 Gene

  • GC08P026208
  • GC08P026792
  • GC08P026457
  • GC08P026491
  • GC08P024980
  • GC08P026371

Summaries for DPYSL2 Gene

Entrez Gene Summary for DPYSL2 Gene

  • This gene encodes a member of the collapsin response mediator protein family. Collapsin response mediator proteins form homo- and hetero-tetramers and facilitate neuron guidance, growth and polarity. The encoded protein promotes microtubule assembly and is required for Sema3A-mediated growth cone collapse, and also plays a role in synaptic signaling through interactions with calcium channels. This gene has been implicated in multiple neurological disorders, and hyperphosphorylation of the encoded protein may play a key role in the development of Alzheimer's disease. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Sep 2011]

GeneCards Summary for DPYSL2 Gene

DPYSL2 (Dihydropyrimidinase Like 2) is a Protein Coding gene. Diseases associated with DPYSL2 include Alzheimer Disease and Neuronal Ceroid Lipofuscinosis. Among its related pathways are Cytoskeletal Signaling and Development Slit-Robo signaling. GO annotations related to this gene include protein kinase binding and microtubule binding. An important paralog of this gene is CRMP1.

UniProtKB/Swiss-Prot for DPYSL2 Gene

  • Plays a role in neuronal development and polarity, as well as in axon growth and guidance, neuronal growth cone collapse and cell migration. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. May play a role in endocytosis.

Gene Wiki entry for DPYSL2 Gene

Additional gene information for DPYSL2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPYSL2 Gene

Genomics for DPYSL2 Gene

Regulatory Elements for DPYSL2 Gene

Enhancers for DPYSL2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H026447 2 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -63.5 -63538 5 HDGF PKNOX1 SIN3A FOS SP3 NFYC ZNF610 SMARCA4 GLIS1 NBN SDAD1P1 RNA5SP258 LOC100132229 ENSG00000253342 LOC105379332 DPYSL2 PNMA2 BNIP3L LOC105379337
GH08H026575 1.7 FANTOM5 ENCODE dbSUPER 12.1 +63.9 63885 5 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF143 SP3 SP5 LOC100132229 RNA5SP258 LOC105379332 ENSG00000253342 PNMA2 DPYSL2 SDAD1P1 PSME2P5 GC08M026683
GH08H026457 1.5 Ensembl ENCODE dbSUPER 11.1 -56.1 -56143 1 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 FOS DEK TSHZ1 MAFF ZNF610 PNMA2 DPYSL2 LOC105379337
GH08H026634 1.9 FANTOM5 Ensembl ENCODE dbSUPER 7.6 +124.8 124837 9 FOXA2 MLX ZFP64 ARID4B SLC30A9 FOS ATF7 SP5 REST MIER2 DPYSL2 PNMA2 GC08M026683 PSME2P5
GH08H026329 1.4 Ensembl ENCODE dbSUPER 10 -183.3 -183339 3 ELF3 FOXA2 ARID4B KLF17 ZSCAN9 RARA ZNF366 ZSCAN5C FOS ATF7 SDAD1P1 PPP2R2A BNIP3L DPYSL2 PNMA2 GC08M026286
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPYSL2 on UCSC Golden Path with GeneCards custom track

Promoters for DPYSL2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000330401 -22 401 ZSCAN4 ZNF76 KLF17 ZNF2 GLIS2 ZNF366 KLF7 ZNF391 EGR2 SP3
ENSR00000222536 578 401 CTCF MXI1 KLF1 KLF17 ZFHX2 ZBTB48 PATZ1 SCRT2 KLF7 KLF8

Genomic Location for DPYSL2 Gene

Chromosome:
8
Start:
26,514,022 bp from pter
End:
26,658,178 bp from pter
Size:
144,157 bases
Orientation:
Plus strand

Genomic View for DPYSL2 Gene

Genes around DPYSL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPYSL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPYSL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPYSL2 Gene

Proteins for DPYSL2 Gene

  • Protein details for DPYSL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16555-DPYL2_HUMAN
    Recommended name:
    Dihydropyrimidinase-related protein 2
    Protein Accession:
    Q16555
    Secondary Accessions:
    • A8K5H2
    • B4DR31
    • D3DSS7
    • O00424

    Protein attributes for DPYSL2 Gene

    Size:
    572 amino acids
    Molecular mass:
    62294 Da
    Quaternary structure:
    • Homotetramer, and heterotetramer with CRMP1, DPYSL3, DPYSL4 or DPYSL5. Interacts through its C-terminus with the C-terminus of CYFIP1/SRA1. Interacts with HTR4. Interacts with CLN6. Interacts with MICALL1.

    Three dimensional structures from OCA and Proteopedia for DPYSL2 Gene

    Alternative splice isoforms for DPYSL2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DPYSL2 Gene

Post-translational modifications for DPYSL2 Gene

  • 3F4, a monoclonal antibody which strongly stains neurofibrillary tangles in Alzheimer disease brains, specifically labels DPYSL2 when phosphorylated on Ser-518, Ser-522 and Thr-509.
  • Phosphorylation at Thr-514 by GSK3B abolishes tubulin-binding leading to destabilization of microtubule assembly in axons and neurodegeneration (By similarity). Phosphorylation by DYRK2 at Ser-522 is required for subsequent phosphorylation by GSK3B.
  • Ubiquitination at posLast=345345 and posLast=472472
  • Modification sites at PhosphoSitePlus

Other Protein References for DPYSL2 Gene

No data available for DME Specific Peptides for DPYSL2 Gene

Domains & Families for DPYSL2 Gene

Gene Families for DPYSL2 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

Q16555

UniProtKB/Swiss-Prot:

DPYL2_HUMAN :
  • Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.
Family:
  • Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.
genes like me logo Genes that share domains with DPYSL2: view

Function for DPYSL2 Gene

Molecular function for DPYSL2 Gene

GENATLAS Biochemistry:
dihydropyrimidinase related protein 2,mainly expressed in the fetal and neonatal brain,involved in the developmental process of the nervous system
UniProtKB/Swiss-Prot Function:
Plays a role in neuronal development and polarity, as well as in axon growth and guidance, neuronal growth cone collapse and cell migration. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. May play a role in endocytosis.

Phenotypes From GWAS Catalog for DPYSL2 Gene

Gene Ontology (GO) - Molecular Function for DPYSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004157 dihydropyrimidinase activity TAS 8973361
GO:0005515 protein binding IPI 16260607
GO:0008017 microtubule binding IEA --
GO:0016787 hydrolase activity IEA --
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA --
genes like me logo Genes that share ontologies with DPYSL2: view
genes like me logo Genes that share phenotypes with DPYSL2: view

Animal Model Products

CRISPR Products

miRNA for DPYSL2 Gene

miRTarBase miRNAs that target DPYSL2

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DPYSL2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DPYSL2 Gene

Localization for DPYSL2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DPYSL2 Gene

Cytoplasm, cytosol. Cytoplasm, cytoskeleton. Membrane. Note=Tightly but non-covalently associated with membranes.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DPYSL2 gene
Compartment Confidence
plasma membrane 5
extracellular 5
cytosol 5
cytoskeleton 4
nucleus 3
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for DPYSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005739 mitochondrion IEA --
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton IEA --
GO:0005874 colocalizes_with microtubule IDA 20801876
genes like me logo Genes that share ontologies with DPYSL2: view

Pathways & Interactions for DPYSL2 Gene

genes like me logo Genes that share pathways with DPYSL2: view

Pathways by source for DPYSL2 Gene

1 KEGG pathway for DPYSL2 Gene

SIGNOR curated interactions for DPYSL2 Gene

Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for DPYSL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006139 nucleobase-containing compound metabolic process TAS 8973361
GO:0006897 endocytosis IMP 20801876
GO:0007010 cytoskeleton organization ISS --
GO:0007165 signal transduction TAS 8973361
GO:0007275 multicellular organism development IEA --
genes like me logo Genes that share ontologies with DPYSL2: view

Drugs & Compounds for DPYSL2 Gene

(2) Drugs for DPYSL2 Gene - From: PharmGKB, DGIdb, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Lacosamide Approved Pharma Checkpoint kinase inhibitor,ATP competitive, Checkpoint kinase (Chk) inhibitor 82

(5) Additional Compounds for DPYSL2 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ureidopropionic acid
  • 3-(Carbamoylamino)propanoate
  • 3-(Carbamoylamino)propanoic acid
  • 3-Ureido-propionate
  • 3-Ureidopropanoate
  • 3-Ureidopropanoic acid
462-88-4
genes like me logo Genes that share compounds with DPYSL2: view

Transcripts for DPYSL2 Gene

Unigene Clusters for DPYSL2 Gene

Dihydropyrimidinase-like 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DPYSL2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for DPYSL2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17a · 17b
SP1: - - - -
SP2: -
SP3:
SP4: - -
SP5: -
SP6: -

Relevant External Links for DPYSL2 Gene

GeneLoc Exon Structure for
DPYSL2
ECgene alternative splicing isoforms for
DPYSL2

Expression for DPYSL2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPYSL2 Gene

Protein differential expression in normal tissues from HIPED for DPYSL2 Gene

This gene is overexpressed in Spinal cord (10.6), Fetal Brain (10.1), Frontal cortex (9.9), Brain (8.0), and Bone marrow stromal cell (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DPYSL2 Gene



Protein tissue co-expression partners for DPYSL2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DPYSL2 Gene:

DPYSL2

SOURCE GeneReport for Unigene cluster for DPYSL2 Gene:

Hs.593187

mRNA Expression by UniProt/SwissProt for DPYSL2 Gene:

Q16555-DPYL2_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for DPYSL2 Gene

  • Nervous system(5)
  • Eye(4.5)
  • Liver(4.2)
  • Lung(3.1)
genes like me logo Genes that share expression patterns with DPYSL2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPYSL2 Gene

Orthologs for DPYSL2 Gene

This gene was present in the common ancestor of animals.

Orthologs for DPYSL2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DPYSL2 33 34
  • 99.36 (n)
oppossum
(Monodelphis domestica)
Mammalia DPYSL2 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DPYSL2 33 34
  • 92.12 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia DPYSL2 34
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DPYSL2 33 34
  • 90.85 (n)
mouse
(Mus musculus)
Mammalia Dpysl2 33 16 34
  • 90.67 (n)
rat
(Rattus norvegicus)
Mammalia Dpysl2 33
  • 90.2 (n)
chicken
(Gallus gallus)
Aves DPYSL2 33 34
  • 83.09 (n)
lizard
(Anolis carolinensis)
Reptilia DPYSL2 34
  • 97 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dpysl2 33
  • 78.15 (n)
Str.15312 33
zebrafish
(Danio rerio)
Actinopterygii dpysl2b 34
  • 90 (a)
OneToOne
Dr.29680 33
fruit fly
(Drosophila melanogaster)
Insecta CRMP 35
  • 46 (a)
worm
(Caenorhabditis elegans)
Secernentea dhp-2 35
  • 48 (a)
dhp-1 35
  • 47 (a)
unc-33 35
  • 34 (a)
Species where no ortholog for DPYSL2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DPYSL2 Gene

ENSEMBL:
Gene Tree for DPYSL2 (if available)
TreeFam:
Gene Tree for DPYSL2 (if available)

Paralogs for DPYSL2 Gene

Paralogs for DPYSL2 Gene

(5) SIMAP similar genes for DPYSL2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with DPYSL2: view

Variants for DPYSL2 Gene

Sequence variations from dbSNP and Humsavar for DPYSL2 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
VAR_036316 A colorectal cancer sample
rs138340807 Pathogenic 26,581,971(+) CAGAG(A/C/T)GATCG reference, synonymous-codon, utr-variant-5-prime
rs1000030896 -- 26,603,182(+) TTATT(A/T)TTTTT intron-variant
rs1000090048 -- 26,578,450(+) GGTTG(C/T)GGGAG intron-variant, utr-variant-5-prime
rs1000097471 -- 26,650,998(+) TACCC(A/C/G)CGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DPYSL2 Gene

Variant ID Type Subtype PubMed ID
esv3572649 CNV loss 25503493
esv3616666 OTHER inversion 21293372
esv988025 CNV insertion 20482838
nsv1117814 CNV deletion 24896259
nsv1119175 CNV deletion 24896259
nsv465626 CNV loss 19166990
nsv610862 CNV loss 21841781
nsv610863 CNV loss 21841781
nsv6130 CNV insertion 18451855
nsv824581 CNV gain 20364138

Variation tolerance for DPYSL2 Gene

Residual Variation Intolerance Score: 14.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.43; 42.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DPYSL2 Gene

Human Gene Mutation Database (HGMD)
DPYSL2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPYSL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DPYSL2 Gene

Disorders for DPYSL2 Gene

MalaCards: The human disease database

(3) MalaCards diseases for DPYSL2 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
alzheimer disease
  • alzheimer disease, late-onset
neuronal ceroid lipofuscinosis
  • neuronal ceroid-lipofuscinoses
schizophrenia
  • schizophrenia 12
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for DPYSL2

Genetic Association Database (GAD)
DPYSL2
Human Genome Epidemiology (HuGE) Navigator
DPYSL2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPYSL2
genes like me logo Genes that share disorders with DPYSL2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DPYSL2 Gene

Publications for DPYSL2 Gene

  1. A novel gene family defined by human dihydropyrimidinase and three related proteins with differential tissue distribution. (PMID: 8973361) Hamajima N … Nonaka M (Gene 1996) 2 3 4 22 60
  2. An investigation of the dihydropyrimidinase-like 2 (DPYSL2) gene in schizophrenia: genetic association study and expression analysis. (PMID: 16321170) Zhao X … He L (The international journal of neuropsychopharmacology 2006) 3 22 45 60
  3. CRMP-2 is involved in kinesin-1-dependent transport of the Sra-1/WAVE1 complex and axon formation. (PMID: 16260607) Kawano Y … Kaibuchi K (Molecular and cellular biology 2005) 3 4 22 60
  4. Neurofibrillary tangle-associated collapsin response mediator protein-2 (CRMP-2) is highly phosphorylated on Thr-509, Ser-518, and Ser-522. (PMID: 10757975) Gu Y … Ihara Y (Biochemistry 2000) 3 4 22 60
  5. Characterization of the human dihydropyrimidinase-related protein 2 (DRP-2) gene. (PMID: 10574455) Kitamura K … Nonaka M (DNA research : an international journal for rapid publication of reports on genes and genomes 1999) 3 4 22 60

Products for DPYSL2 Gene

Sources for DPYSL2 Gene

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