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Aliases for DPYD-AS2 Gene

Subcategory (RNA class) for DPYD-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DPYD-AS2 Gene

  • DPYD Antisense RNA 2 2 3 5
  • DPYD Antisense RNA 2 (Non-Protein Coding) 2

External Ids for DPYD-AS2 Gene

Previous GeneCards Identifiers for DPYD-AS2 Gene

  • GC00U933199
  • GC01P098263

Summaries for DPYD-AS2 Gene

GeneCards Summary for DPYD-AS2 Gene

DPYD-AS2 (DPYD Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPYD-AS2 Gene

Genomics for DPYD-AS2 Gene

Regulatory Elements for DPYD-AS2 Gene

Enhancers for DPYD-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G097824 0.5 ENCODE 0.3 +27.9 27916 0.9 FOXA2 SMARCA4 HLF DPYD GC01P097840 DPYD-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPYD-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for DPYD-AS2 Gene

Chromosome:
1
Start:
97,796,921 bp from pter
End:
97,798,066 bp from pter
Size:
1,146 bases
Orientation:
Plus strand

Genomic View for DPYD-AS2 Gene

Genes around DPYD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPYD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPYD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPYD-AS2 Gene

Proteins for DPYD-AS2 Gene

Post-translational modifications for DPYD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DPYD-AS2 Gene

Domains & Families for DPYD-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DPYD-AS2 Gene

Function for DPYD-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPYD-AS2 Gene

Localization for DPYD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPYD-AS2 Gene

Pathways & Interactions for DPYD-AS2 Gene

SuperPathways for DPYD-AS2 Gene

No Data Available

Interacting Proteins for DPYD-AS2 Gene

Gene Ontology (GO) - Biological Process for DPYD-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPYD-AS2 Gene

Drugs & Compounds for DPYD-AS2 Gene

No Compound Related Data Available

Transcripts for DPYD-AS2 Gene

mRNA/cDNA for DPYD-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DPYD-AS2 Gene

No ASD Table

Relevant External Links for DPYD-AS2 Gene

GeneLoc Exon Structure for
DPYD-AS2
ECgene alternative splicing isoforms for
DPYD-AS2

Expression for DPYD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPYD-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for DPYD-AS2 Gene

This gene is overexpressed in Testis (x28.3) and Whole Blood (x6.3).
genes like me logo Genes that share expression patterns with DPYD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPYD-AS2 Gene

Orthologs for DPYD-AS2 Gene

Evolution for DPYD-AS2 Gene

ENSEMBL:
Gene Tree for DPYD-AS2 (if available)
TreeFam:
Gene Tree for DPYD-AS2 (if available)

No data available for Orthologs for DPYD-AS2 Gene

Paralogs for DPYD-AS2 Gene

No data available for Paralogs for DPYD-AS2 Gene

Variants for DPYD-AS2 Gene

Sequence variations from dbSNP and Humsavar for DPYD-AS2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000565260 -- 97,795,095(+) AGCAG(G/T)CTTAA intron-variant, upstream-variant-2KB
rs1000616188 -- 97,795,407(+) AATAC(A/G)TAATT intron-variant, upstream-variant-2KB
rs1001297450 -- 97,794,982(+) TGTTT(C/G)TTCTA intron-variant, upstream-variant-2KB
rs1001779103 -- 97,795,498(+) AAAGC(-/A)AAATA intron-variant, upstream-variant-2KB
rs1001828555 -- 97,795,989(+) AAATA(C/T)AACAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DPYD-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv376n54 CNV loss 21841781
nsv830725 CNV loss 17160897

Relevant External Links for DPYD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPYD-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPYD-AS2 Gene

Disorders for DPYD-AS2 Gene

Relevant External Links for DPYD-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPYD-AS2

No disorders were found for DPYD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPYD-AS2 Gene

Publications for DPYD-AS2 Gene

  1. LncRNA expression profile of I9Np63I+ in cervical squamous cancers and its suppressive effects on LIF expression. (PMID: 28391028) Qian L. … Zhou Y. (Cytokine 2017) 2 3 64

Products for DPYD-AS2 Gene

Sources for DPYD-AS2 Gene

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