Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DPYD-AS1 Gene

Subcategory (RNA class) for DPYD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DPYD-AS1 Gene

  • DPYD Antisense RNA 1 2 3 5
  • DPYD Antisense RNA 1 (Non-Protein Coding) 2

External Ids for DPYD-AS1 Gene

Previous GeneCards Identifiers for DPYD-AS1 Gene

  • GC00U933325
  • GC01P097563

Summaries for DPYD-AS1 Gene

GeneCards Summary for DPYD-AS1 Gene

DPYD-AS1 (DPYD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPYD-AS1 Gene

Genomics for DPYD-AS1 Gene

Regulatory Elements for DPYD-AS1 Gene

Enhancers for DPYD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G097093 1 Ensembl ENCODE 0.7 -1.6 -1616 1.6 JUN SIN3A CTBP1 GATA3 GATA2 FOS MAFK CHD2 STAT1 BHLHE40 DPYD-AS1 GC01M096988
GH01G097143 2.2 VISTA ENCODE 0.2 +49.0 49007 2.6 JUN BHLHE40 USF2 CEBPB JUNB EP300 ARID3A JUND POLR2A GATA2 GC01P097157 DPYD-AS1
GH01G097137 0.9 Ensembl ENCODE 0.3 +42.5 42493 1.0 CTCF PKNOX1 TRIM22 ZBTB40 RAD21 CTBP1 RAD51 POLR2A SMARCA4 SMC3 GC01P097157 DPYD-AS1
GH01G097070 0.4 FANTOM5 0.3 -25.4 -25385 0.4 FOS DPYD-AS1 GC01M096988
GH01G097130 0.4 FANTOM5 0.3 +34.6 34643 0.1 ZNF366 PTBP2 GC01P097157 DPYD-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPYD-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DPYD-AS1 Gene

Chromosome:
1
Start:
97,095,923 bp from pter
End:
97,322,955 bp from pter
Size:
227,033 bases
Orientation:
Plus strand

Genomic View for DPYD-AS1 Gene

Genes around DPYD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPYD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPYD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPYD-AS1 Gene

Proteins for DPYD-AS1 Gene

Post-translational modifications for DPYD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DPYD-AS1 Gene

Domains & Families for DPYD-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DPYD-AS1 Gene

Function for DPYD-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPYD-AS1 Gene

Localization for DPYD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPYD-AS1 Gene

Pathways & Interactions for DPYD-AS1 Gene

SuperPathways for DPYD-AS1 Gene

No Data Available

Interacting Proteins for DPYD-AS1 Gene

Gene Ontology (GO) - Biological Process for DPYD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPYD-AS1 Gene

Drugs & Compounds for DPYD-AS1 Gene

No Compound Related Data Available

Transcripts for DPYD-AS1 Gene

mRNA/cDNA for DPYD-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DPYD-AS1 Gene

DPYD antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DPYD-AS1 Gene

No ASD Table

Relevant External Links for DPYD-AS1 Gene

GeneLoc Exon Structure for
DPYD-AS1
ECgene alternative splicing isoforms for
DPYD-AS1

Expression for DPYD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPYD-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DPYD-AS1 Gene

This gene is overexpressed in Whole Blood (x6.8).

SOURCE GeneReport for Unigene cluster for DPYD-AS1 Gene:

Hs.682651
genes like me logo Genes that share expression patterns with DPYD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPYD-AS1 Gene

Orthologs for DPYD-AS1 Gene

Evolution for DPYD-AS1 Gene

ENSEMBL:
Gene Tree for DPYD-AS1 (if available)
TreeFam:
Gene Tree for DPYD-AS1 (if available)

No data available for Orthologs for DPYD-AS1 Gene

Paralogs for DPYD-AS1 Gene

No data available for Paralogs for DPYD-AS1 Gene

Variants for DPYD-AS1 Gene

Sequence variations from dbSNP and Humsavar for DPYD-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1801267 Pathogenic 97,098,598(-) ACAGC(A/G)CAAGA intron-variant, reference, missense
rs1057516510 Likely pathogenic 97,234,956(-) CTGTG(ACCT/GC)CCATT intron-variant, reference, frameshift-variant
rs1057516828 Likely pathogenic 97,305,271(-) CATAT(-/A)GGAGG intron-variant, reference, frameshift-variant
rs1057516873 Likely pathogenic 97,098,575(-) AAAAC(A/T)AGATT intron-variant, reference, stop-gained
rs1057516894 Likely pathogenic 97,098,501(-) CCTAT(-/T)CCTAC intron-variant, reference, frameshift-variant

Structural Variations from Database of Genomic Variants (DGV) for DPYD-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2167618 CNV deletion 18987734
esv2523572 CNV deletion 19546169
esv2715174 CNV deletion 23290073
esv2715185 CNV deletion 23290073
esv2715196 CNV deletion 23290073
esv3307080 CNV mobile element insertion 20981092
esv3347093 CNV insertion 20981092
esv3422699 CNV insertion 20981092
esv3578018 CNV loss 25503493
esv3586876 CNV loss 21293372
nsv1116607 CNV tandem duplication 24896259
nsv1145354 CNV deletion 24896259
nsv1148063 CNV deletion 26484159
nsv1988 CNV insertion 18451855
nsv470728 CNV loss 18288195
nsv546861 CNV loss 21841781
nsv546862 CNV loss 21841781
nsv546863 CNV loss 21841781
nsv546864 CNV loss 21841781
nsv830692 CNV gain+loss 17160897

Relevant External Links for DPYD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPYD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPYD-AS1 Gene

Disorders for DPYD-AS1 Gene

Relevant External Links for DPYD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPYD-AS1

No disorders were found for DPYD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPYD-AS1 Gene

Publications for DPYD-AS1 Gene

No publications were found for DPYD-AS1 Gene.

Products for DPYD-AS1 Gene

Sources for DPYD-AS1 Gene

Content
Loading form....