DPY19L2P2 Gene
pseudogene GIFtS: 29
GCID: GC07M102815
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dpy-19-like 2 pseudogene 2 (C. elegans)
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Aliases
for DPY19L2P2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Dpy-19-Like 2 Pseudogene 2 (C. Elegans)1 2 | | DKFZp434E0921 | | FLJ361661 | | Dpy-19-Like Protein 2 Pseudogene 23 |
| External Ids: | HGNC: 217641 | Entrez Gene: 3491522 | Ensembl: ENSG000001706297 | UniProtKB: Q6ZN683 | | ORGUL members: | |
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| NONCODE:n408013 n406138 | |
Export aliases for DPY19L2P2 gene to outside databasesPrevious GC identifers: GC07U901548 GC07M102603 GC07M097177
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Summaries
for DPY19L2P2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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-- |
Genomic Views
for DPY19L2P2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the DPY19L2P2 gene promoter:
Tal-1 p53 POU6F1 (c2) Tal-1beta E47 SRY POU2F1 POU2F1a c-Myb ITF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for DPY19L2P2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DPY19L2P2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q22.1 Ensembl cytogenetic band: 7q22.1 HGNC cytogenetic band: 7q22.1DPY19L2P2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M102815: view genomic region
(about GC identifiers)
Start:
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102,815,460 bp from pter |
End:
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102,920,913 bp from pter |
Size:
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105,454 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 102,175,826-102,281,279 |
ORGUL member locations:
Legend (see complete legend)
102815461 102868187 102920913 chr7
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Proteins
for DPY19L2P2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: D19P2_HUMAN, Q6ZN68 (See
protein sequence)Recommended Name: Putative protein dpy-19 homolog 2-like 2 Size: 376 amino acids; 43060 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Caution: Could be the product of a pseudogene
Secondary accessions: Q8N9V4 Q8ND62Alternative splicing: 3 isoforms: Q6ZN68-1 Q6ZN68-2 Q6ZN68-3 Explore the universe of human proteins at neXtProt for DPY19L2P2: NX_Q6ZN68
DPY19L2P2 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
DPY19L2P2 Antibody Products:
Assay Products for DPY19L2P2: |
Protein
Domains /
Families
for DPY19L2P2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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DPY19L2P2 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q6ZN68ProtoNet protein and cluster: Q6ZN68 UniProtKB/Swiss-Prot: D19P2_HUMAN, Q6ZN68Similarity: Belongs to the dpy-19 family |
Function
for DPY19L2P2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P2 |
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Pathways & Interactions
for DPY19L2P2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DPY19L2P2
|
Drugs & Compounds
for DPY19L2P2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DPY19L2P2
Search CenterWatch for drugs/clinical trials and news about DPY19L2P2 
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Transcripts
for DPY19L2P2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for DPY19L2P2 gene: NM_182634.2 Unigene Cluster for DPY19L2P2: Dpy-19-like 2 pseudogene 2 (C. elegans) Hs.732579 [show with all ESTs]Unigene Representative Sequence: NR_0277688 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000411491(uc003vbh.4) ENST00000312132 ENST00000438364(uc003vbg.4 uc010lit.3)
ENST00000446373(uc003vbi.2 uc003vbj.2) ENST00000439473 ENST00000435536
ENST00000544560 ENST00000544945
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DPY19L2P2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat DPY19L2P2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DPY19L2P2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DPY19L2P2 |
Additional cDNA sequence: AK093485.1 AK131353.1 AK302046.1 AL049437.1 AL834175.1 BC023575.2 BC045595.1 BC068601.1 BC094802.1 BC150309.1 BX648212.1 NR_003561.2 NR_027768.1 13 DOTS entries: DT.91728364 DT.107770 DT.70103263 DT.100028058 DT.91728365 DT.95271516 DT.100018635 DT.121054834 DT.121054842 DT.95271514 DT.121054840 DT.95271515 DT.92023799 24/87 AceView cDNA sequences (see all 87): BX508598 BG461089 AI221371 BC064909 BX113171 CB105609 CB105935 BC023575 BU738141 BM453644 AL834175 CA777420 AI697333 CB105625 BC033022 AL049437 AL599936 BC045595 CB105892 BQ427441 AW102618 AI654115 BG210034 BI463805
GeneLoc Exon Structure
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Expression
for DPY19L2P2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DPY19L2P2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for DPY19L2P2
SOURCE GeneReport for Unigene cluster: Hs.732579
UniProtKB/Swiss-Prot: D19P2_HUMAN, Q6ZN68Tissue specificity: Fibroblast, lung, lymphoblast, spleen and testis
SABiosciences Custom PCR Arrays for DPY19L2P2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DPY19L2P2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat DPY19L2P2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DPY19L2P2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DPY19L2P2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P2 |
Orthologs
for DPY19L2P2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for DPY19L2P2 (if available)
TreeFam Gene Tree for DPY19L2P2 (if available) |
Paralogs
for DPY19L2P2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for DPY19L2P2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for DPY19L2P2 (102815460 - 102920913 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DPY19L2P2: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for DPY19L2P2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for DPY19L2P2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for DPY19L2P2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with DPY19L2P2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Duplication and relocation of the functional DPY19L2 gene within low copy repeats. (PubMed id 16526957)1, 2 Carson A.R.... Scherer S.W. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for DPY19L2P2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing DPY19L2P2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing DPY19L2P2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DPY19L2P2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for DPY19L2P2 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for DPY19L2P2 gene:
Search GeneIP for patents involving DPY19L2P2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DPY19L2P2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DPY19L2P2 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DPY19L2P2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DPY19L2P2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DPY19L2P2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DPY19L2P2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DPY19L2P2 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P2 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat DPY19L2P2 |
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Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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