DPY19L2P1 Gene
pseudogene GIFtS: 28
GCID: GC07M035095
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dpy-19-like 2 pseudogene 1 (C. elegans)
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Aliases
for DPY19L2P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Dpy-19-Like 2 Pseudogene 1 (C. Elegans)1 2 | | Dpy-19-Like Protein 2 Pseudogene 13 |
Export aliases for DPY19L2P1 gene to outside databasesPrevious GC identifers: GC07U901560 GC07M035087 |
Summaries
for DPY19L2P1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for DPY19L2P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the DPY19L2P1 gene promoter:
TBP HOXA3 HSF1 (long) NF-E2 p45 Evi-1 E47 FOXL1 TFIID HSF1short NF-E2
Other transcription factors
Search SABiosciences Chromatin IP Primers for DPY19L2P1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DPY19L2P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7p14.2 Ensembl cytogenetic band: 7p14.2 HGNC cytogenetic band: 7p14.3DPY19L2P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M035095: view genomic region
(about GC identifiers)
Start:
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35,119,601 bp from pter |
End:
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35,225,934 bp from pter |
Size:
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106,334 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 35,168,543-35,186,433 |
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Proteins
for DPY19L2P1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: D19P1_HUMAN, Q6NXN4 (See
protein sequence)Recommended Name: Protein dpy-19 homolog 2-like 1 Size: 242 amino acids; 28036 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Miscellaneous: It has been suggested that DPY19L2P1 is an inactive pseudogene from which DPY19L2 has evolved byduplication. However, expressed transcript sequences derived from the DPY19L2P1 locus are known to exist
Secondary accessions: B4E2E3Explore the universe of human proteins at neXtProt for DPY19L2P1: NX_Q6NXN4
DPY19L2P1 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0016021 | integral to membrane |
IEA | -- |
DPY19L2P1 for ontologies About GeneDecksing
DPY19L2P1 Antibody Products:
Assay Products for DPY19L2P1: |
Protein
Domains /
Families
for DPY19L2P1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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DPY19L2P1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q6NXN4ProtoNet protein and cluster: Q6NXN4 UniProtKB/Swiss-Prot: D19P1_HUMAN, Q6NXN4Similarity: Belongs to the dpy-19 family |
Function
for DPY19L2P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P1 |
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Pathways & Interactions
for DPY19L2P1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DPY19L2P1
|
Drugs & Compounds
for DPY19L2P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DPY19L2P1
Search CenterWatch for drugs/clinical trials and news about DPY19L2P1 
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Transcripts
for DPY19L2P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Cluster for DPY19L2P1: Dpy-19-like 2 pseudogene 1 (C. elegans) Hs.594815 [show with all ESTs]Unigene Representative Sequence: BX6476114 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000458672(uc003tep.1 uc010kwz.1 uc003teq.1) ENST00000454445
ENST00000436258 ENST00000545701
Additional cDNA sequence: AK304236.1 BC013598.1 BC066987.1 BX647611.1 BX648666.1 NR_002833.2 6 DOTS entries: DT.101984835 DT.102835905 DT.91802237 DT.92422908 DT.99929261 DT.121099045
GeneLoc Exon Structure
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Expression
for DPY19L2P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DPY19L2P1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for DPY19L2P1
SOURCE GeneReport for Unigene cluster: Hs.594815
UniProtKB/Swiss-Prot: D19P1_HUMAN, Q6NXN4Tissue specificity: Brain, heart, placenta and testis
SABiosciences Custom PCR Arrays for DPY19L2P1
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DPY19L2P1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat DPY19L2P1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DPY19L2P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DPY19L2P1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P1 |
Orthologs
for DPY19L2P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for DPY19L2P1 (if available)
TreeFam Gene Tree for DPY19L2P1 (if available) |
Paralogs
for DPY19L2P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for DPY19L2P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for DPY19L2P1 (35119601 - 35225934 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DPY19L2P1: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for DPY19L2P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for DPY19L2P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for DPY19L2P1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with DPY19L2P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Duplication and relocation of the functional DPY19L2 gene within low copy repeats. (PubMed id 16526957)2 Carson A.R.... Scherer S.W. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for DPY19L2P1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing DPY19L2P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing DPY19L2P1 gene
(According to HUGE)
About This Section
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Specialized Databases showing DPY19L2P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for DPY19L2P1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for DPY19L2P1 gene:
Search GeneIP for patents involving DPY19L2P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DPY19L2P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DPY19L2P1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DPY19L2P1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DPY19L2P1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DPY19L2P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DPY19L2P1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DPY19L2P1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DPY19L2P1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat DPY19L2P1 |
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