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Aliases for DPRXP4 Gene

Subcategory (RNA class) for DPRXP4 Gene

lncRNA

Aliases for DPRXP4 Gene

  • Divergent-Paired Related Homeobox Pseudogene 4 2 3 5

External Ids for DPRXP4 Gene

ORGUL Members for DPRXP4 Gene

Previous GeneCards Identifiers for DPRXP4 Gene

  • GC17U900559
  • GC17P026326
  • GC17P029302
  • GC17P025513

Summaries for DPRXP4 Gene

Entrez Gene Summary for DPRXP4 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DPRX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for DPRXP4 Gene

DPRXP4 (Divergent-Paired Related Homeobox Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPRXP4 Gene

Genomics for DPRXP4 Gene

Regulatory Elements for DPRXP4 Gene

Enhancers for DPRXP4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G031548 1.6 Ensembl ENCODE dbSUPER 10.8 +574.5 574466 2.4 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 UTP6 SUZ12 ENSG00000266490 SH3GL1P2 ATAD5 RHBDL3 DPRXP4 RNF135 ENSG00000264456 TEFM
GH17G030697 1.5 Ensembl ENCODE dbSUPER 10.8 -277.2 -277241 1.4 ARID4B SIN3A GLI4 ZNF2 GTF3C2 ZNF121 ZNF143 FOS SP3 REST SUZ12P1 ENSG00000266490 SH3GL1P2 ATAD5 DPRXP4 RNF135 ENSG00000264456 TEFM LRRC37BP1 RN7SL316P
GH17G030104 1.3 Ensembl ENCODE 10.8 -870.4 -870431 1.5 PKNOX1 FOXA2 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CORO6 SH3GL1P2 NUFIP2 ATAD5 RNU6-1267P BLMH DPRXP4 RNF135 ENSG00000264456 TEFM
GH17G031093 1.1 ENCODE 11.3 +120.0 119980 2.8 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS ZNF263 SP3 SMARCB1 ENSG00000264456 RNF135 SUZ12 UTP6 SH3GL1P2 SH3GL1P1 ATAD5 DPRXP4 OMG MIR4733
GH17G031007 1.2 FANTOM5 ENCODE 9.9 +33.3 33316 1.8 HDGF PKNOX1 SIN3A GLI4 ZNF2 ZNF121 GLIS2 ZNF263 SP3 REST UTP6 SUZ12 SH3GL1P2 ATAD5 TEFM DPRXP4 RAB11FIP4 OMG GC17M031007 ENSG00000266865
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPRXP4 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the DPRXP4 gene promoter:

Genomic Location for DPRXP4 Gene

Chromosome:
17
Start:
30,975,335 bp from pter
End:
30,976,004 bp from pter
Size:
670 bases
Orientation:
Plus strand

Genomic View for DPRXP4 Gene

Genes around DPRXP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPRXP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPRXP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPRXP4 Gene

Proteins for DPRXP4 Gene

Post-translational modifications for DPRXP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DPRXP4 Gene

Domains & Families for DPRXP4 Gene

Gene Families for DPRXP4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DPRXP4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DPRXP4 Gene

Function for DPRXP4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPRXP4 Gene

Localization for DPRXP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPRXP4 Gene

Pathways & Interactions for DPRXP4 Gene

SuperPathways for DPRXP4 Gene

No Data Available

Interacting Proteins for DPRXP4 Gene

Gene Ontology (GO) - Biological Process for DPRXP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPRXP4 Gene

Drugs & Compounds for DPRXP4 Gene

No Compound Related Data Available

Transcripts for DPRXP4 Gene

mRNA/cDNA for DPRXP4 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DPRXP4 Gene

Divergent-paired related homeobox pseudogene 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DPRXP4 Gene

No ASD Table

Relevant External Links for DPRXP4 Gene

GeneLoc Exon Structure for
DPRXP4
ECgene alternative splicing isoforms for
DPRXP4

Expression for DPRXP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPRXP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of DPRXP4 Gene:

DPRXP4

SOURCE GeneReport for Unigene cluster for DPRXP4 Gene:

Hs.683578
genes like me logo Genes that share expression patterns with DPRXP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPRXP4 Gene

Orthologs for DPRXP4 Gene

Evolution for DPRXP4 Gene

ENSEMBL:
Gene Tree for DPRXP4 (if available)
TreeFam:
Gene Tree for DPRXP4 (if available)

No data available for Orthologs for DPRXP4 Gene

Paralogs for DPRXP4 Gene

No data available for Paralogs for DPRXP4 Gene

Variants for DPRXP4 Gene

Sequence variations from dbSNP and Humsavar for DPRXP4 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000013478 -- 30,976,369(+) TTAGG(C/T)TTTGT intron-variant, downstream-variant-500B
rs1001573923 -- 30,975,534(+) AATGG(C/T)CTCGA intron-variant, nc-transcript-variant
rs1001583646 -- 30,975,769(+) CCCTC(A/T)TTCCA intron-variant, nc-transcript-variant
rs1001677610 -- 30,974,495(+) TTTGG(A/G)TAGTA intron-variant, upstream-variant-2KB
rs1003057158 -- 30,975,654(+) GCCAA(C/T)ACCGG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for DPRXP4 Gene

Variant ID Type Subtype PubMed ID
esv2715813 CNV deletion 23290073
nsv457720 CNV loss 19166990
nsv833412 CNV loss 17160897

Relevant External Links for DPRXP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPRXP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPRXP4 Gene

Disorders for DPRXP4 Gene

Relevant External Links for DPRXP4

Genetic Association Database (GAD)
DPRXP4
Human Genome Epidemiology (HuGE) Navigator
DPRXP4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPRXP4

No disorders were found for DPRXP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPRXP4 Gene

Publications for DPRXP4 Gene

  1. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R. … Losekoot M. (Am. J. Med. Genet. A 2009) 3 46 64

Products for DPRXP4 Gene

Sources for DPRXP4 Gene

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