Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DPH6-AS1 Gene

Subcategory (RNA class) for DPH6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DPH6-AS1 Gene

  • DPH6 Antisense RNA 1 (Head To Head) 2 3 5
  • ATPBD4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATPBD4 Antisense RNA 1 (Head To Head) 2 3
  • ATPBD4 Antisense RNA 1 2
  • ATPBD4-AS1 3

External Ids for DPH6-AS1 Gene

Previous HGNC Symbols for DPH6-AS1 Gene

  • ATPBD4-AS1

Previous GeneCards Identifiers for DPH6-AS1 Gene

  • GC15P035841

Summaries for DPH6-AS1 Gene

GeneCards Summary for DPH6-AS1 Gene

DPH6-AS1 (DPH6 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPH6-AS1 Gene

Genomics for DPH6-AS1 Gene

Regulatory Elements for DPH6-AS1 Gene

Enhancers for DPH6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G035696 1.4 FANTOM5 Ensembl ENCODE 10.7 +151.8 151837 3.8 ATF1 RAD21 CHAMP1 ELK1 GATA2 RCOR1 FOS ZNF654 CEBPB ZEB2 DPH6 DPH6-AS1 GC15P035699 PIR55827
GH15G035690 1.1 Ensembl ENCODE 10.7 +146.0 145972 4.2 PKNOX1 FOXA2 RAD21 RARA GATA2 EGR1 FOS NR2F2 KLF16 PBX2 AQR DPH6 DPH6-AS1 RPL36AP8 GC15P035699 PIR55827
GH15G034649 0.9 ENCODE 9.7 -895.8 -895779 1.7 PKNOX1 ZFP64 FEZF1 FOS ZNF202 JUNB TSHZ1 REST ZNF623 ZNF518A AQR HNRNPLP2 LOC101929988 ENSG00000259287 PRELID1P4 DPH6 DPH6-AS1 GOLGA8A LINC02252 ENSG00000252425
GH15G035522 0.6 ENCODE 11 -24.1 -24061 0.2 CTCF GATA2 MAX HNF4A RAD21 NR2F2 DPH6-AS1 DPH6 HNRNPA1P45
GH15G035534 0.5 ENCODE 0.4 -10.5 -10488 1.7 ARID1B JUND GATA2 DPH6 DPH6-AS1 HNRNPA1P45
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPH6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DPH6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000074912 -95 1801 HDGF ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143

Genomic Location for DPH6-AS1 Gene

Chromosome:
15
Start:
35,546,195 bp from pter
End:
35,859,001 bp from pter
Size:
312,807 bases
Orientation:
Plus strand

Genomic View for DPH6-AS1 Gene

Genes around DPH6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPH6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPH6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPH6-AS1 Gene

Proteins for DPH6-AS1 Gene

Post-translational modifications for DPH6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DPH6-AS1 Gene

Domains & Families for DPH6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DPH6-AS1 Gene

Function for DPH6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPH6-AS1 Gene

Localization for DPH6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPH6-AS1 Gene

Pathways & Interactions for DPH6-AS1 Gene

SuperPathways for DPH6-AS1 Gene

No Data Available

Interacting Proteins for DPH6-AS1 Gene

Gene Ontology (GO) - Biological Process for DPH6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPH6-AS1 Gene

Transcripts for DPH6-AS1 Gene

mRNA/cDNA for DPH6-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DPH6-AS1 Gene

No ASD Table

Relevant External Links for DPH6-AS1 Gene

GeneLoc Exon Structure for
DPH6-AS1
ECgene alternative splicing isoforms for
DPH6-AS1

Expression for DPH6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPH6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DPH6-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.8).
genes like me logo Genes that share expression patterns with DPH6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPH6-AS1 Gene

Orthologs for DPH6-AS1 Gene

Evolution for DPH6-AS1 Gene

ENSEMBL:
Gene Tree for DPH6-AS1 (if available)
TreeFam:
Gene Tree for DPH6-AS1 (if available)

No data available for Orthologs for DPH6-AS1 Gene

Paralogs for DPH6-AS1 Gene

No data available for Paralogs for DPH6-AS1 Gene

Variants for DPH6-AS1 Gene

Sequence variations from dbSNP and Humsavar for DPH6-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000001981 -- 35,683,188(+) CCATA(-/T)CCCCC intron-variant
rs1000002210 -- 35,657,929(+) CCCAC(A/G)GAAAA intron-variant
rs1000025999 -- 35,585,386(+) AGAGA(A/G)TGCCA intron-variant
rs1000028071 -- 35,788,170(+) GCTTT(C/T)TTGGT intron-variant
rs1000028082 -- 35,829,307(+) CAAAT(C/T)CAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DPH6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1279339 CNV insertion 17803354
esv25308 CNV loss 19812545
esv2572035 CNV deletion 19546169
esv2584984 CNV deletion 19546169
esv2658592 CNV deletion 23128226
esv2676735 CNV deletion 23128226
esv2749568 CNV deletion 23290073
esv275134 CNV loss 21479260
esv27560 CNV loss 19812545
esv3354539 CNV insertion 20981092
esv3636142 CNV loss 21293372
esv3636144 CNV loss 21293372
esv3636146 CNV loss 21293372
nsv1490 CNV deletion 18451855
nsv1491 CNV insertion 18451855
nsv457109 CNV gain 19166990
nsv569159 CNV loss 21841781
nsv569160 CNV gain 21841781
nsv832970 CNV gain 17160897

Relevant External Links for DPH6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPH6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPH6-AS1 Gene

Disorders for DPH6-AS1 Gene

Relevant External Links for DPH6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPH6-AS1

No disorders were found for DPH6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPH6-AS1 Gene

Publications for DPH6-AS1 Gene

  1. Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population. (PMID: 24045676) Pyun J.A. … Kwack K. (Menopause 2013) 3 64
  2. Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy. (PMID: 23776197) Leandro-GarcA-a L.J. … RodrA-guez-Antona C. (J. Med. Genet. 2013) 3 64

Products for DPH6-AS1 Gene

Sources for DPH6-AS1 Gene

Content
Loading form....