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Aliases for DPH3P1 Gene

Aliases for DPH3P1 Gene

  • Diphthamide Biosynthesis 3 Pseudogene 1 2 3 5
  • CSL-Type Zinc Finger-Containing Protein 1 3 4
  • C20orf143 3 4
  • DPH3B 3 4
  • ZCSL1 3 4
  • DPH3, KTI11 Homolog (S. Cerevisiae) Pseudogene 1 2
  • DPH3B, KTI11 Homolog B (S. Cerevisiae) 2
  • DPH3 Homolog B (KTI11, S. Cerevisiae) 3
  • Chromosome 20 Open Reading Frame 143 2
  • Zinc Finger, CSL Domain Containing 1 3
  • Zinc Finger, CSL-Type Containing 1 2
  • Putative DPH3 Homolog B 3

External Ids for DPH3P1 Gene

Previous HGNC Symbols for DPH3P1 Gene

  • C20orf143
  • ZCSL1
  • DPH3B

Previous GeneCards Identifiers for DPH3P1 Gene

  • GC20P061477
  • GC20P058195

Summaries for DPH3P1 Gene

Entrez Gene Summary for DPH3P1 Gene

  • This gene may represent a processed pseudogene of DPH3, GeneID: 285381, because it lacks the exon/intron structure found in the functional gene. However, it does contain an intact open reading frame and it has not been established that the predicted protein is not translated. The NCBI RefSeq Project continues to treat this as a protein coding gene in agreement with Swiss-Prot. [provided by RefSeq, Jan 2014]

GeneCards Summary for DPH3P1 Gene

DPH3P1 (Diphthamide Biosynthesis 3 Pseudogene 1) is a Protein Coding gene.

Additional gene information for DPH3P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPH3P1 Gene

Genomics for DPH3P1 Gene

Regulatory Elements for DPH3P1 Gene

Enhancers for DPH3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H062500 1.8 FANTOM5 Ensembl ENCODE 7.2 -342.9 -342944 2.8 HDGF PKNOX1 ARNT ARID4B SIN3A YBX1 ZNF2 ZBTB7B ZNF207 ZNF143 DIDO1 TAF4 LAMA5 ENSG00000226332 MRGBP RPS21 HAR1A MTG2 YTHDF1 DPH3P1
GH20H062738 1.9 FANTOM5 Ensembl ENCODE dbSUPER 3.2 -103.9 -103883 4.9 PKNOX1 ATF1 ZNF766 GLIS2 ELK1 FOS ATF7 RUNX3 JUNB MIER2 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR1-1 C20orf166-AS1 MIR1-1HG ENSG00000229882 ENSG00000232121
GH20H062588 1 FANTOM5 ENCODE dbSUPER 5.7 -256.3 -256298 0.2 REST SMARCB1 DPH3P1 OGFR ENSG00000264490 WI2-87327B8.2
GH20H062787 0.7 FANTOM5 ENCODE 6.3 -56.5 -56515 0.2 FOSL1 PKNOX1 DPH3P1 OGFR DIDO1 LOC105372716 LINC00659
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPH3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DPH3P1 Gene

Genomic Locations for DPH3P1 Gene
1,626 bases
Plus strand

Genomic View for DPH3P1 Gene

Genes around DPH3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPH3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPH3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPH3P1 Gene

Proteins for DPH3P1 Gene

  • Protein details for DPH3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative DPH3 homolog B
    Protein Accession:

    Protein attributes for DPH3P1 Gene

    78 amino acids
    Molecular mass:
    8721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DPH3P1 Gene

Post-translational modifications for DPH3P1 Gene

No Post-translational modifications

Other Protein References for DPH3P1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for DPH3P1 Gene

Domains & Families for DPH3P1 Gene

Protein Domains for DPH3P1 Gene


Suggested Antigen Peptide Sequences for DPH3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the DPH3 family.
  • Belongs to the DPH3 family.
genes like me logo Genes that share domains with DPH3P1: view

No data available for Gene Families for DPH3P1 Gene

Function for DPH3P1 Gene

Gene Ontology (GO) - Molecular Function for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with DPH3P1: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPH3P1 Gene

Localization for DPH3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DPH3P1 Gene

Pathways & Interactions for DPH3P1 Gene

SuperPathways for DPH3P1 Gene

No Data Available

Interacting Proteins for DPH3P1 Gene

Gene Ontology (GO) - Biological Process for DPH3P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for DPH3P1 Gene

Drugs & Compounds for DPH3P1 Gene

No Compound Related Data Available

Transcripts for DPH3P1 Gene

mRNA/cDNA for DPH3P1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPH3P1 Gene

No ASD Table

Relevant External Links for DPH3P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DPH3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPH3P1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DPH3P1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of DPH3P1 Gene:

genes like me logo Genes that share expression patterns with DPH3P1: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPH3P1 Gene

Orthologs for DPH3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DPH3P1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia DPH3P1 33
  • 100 (n)
Species where no ortholog for DPH3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DPH3P1 Gene

Gene Tree for DPH3P1 (if available)
Gene Tree for DPH3P1 (if available)

Paralogs for DPH3P1 Gene

(2) SIMAP similar genes for DPH3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DPH3P1: view

No data available for Paralogs for DPH3P1 Gene

Variants for DPH3P1 Gene

Sequence variations from dbSNP and Humsavar for DPH3P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000201449 -- 62,844,707(+) TTTCC(C/T)GCCTC intron-variant, nc-transcript-variant, utr-variant-5-prime
rs1000444034 -- 62,845,294(+) TTTTT(A/G)TATTT intron-variant, nc-transcript-variant, utr-variant-5-prime
rs1000481588 -- 62,844,985(+) TTAAC(C/T)TCTGA intron-variant, nc-transcript-variant, utr-variant-5-prime
rs1000535541 -- 62,845,891(+) GTCAA(C/T)AAAGA intron-variant, nc-transcript-variant, downstream-variant-500B, reference, synonymous-codon, utr-variant-3-prime
rs1000818601 -- 62,846,138(+) TTCTT(A/G)ATTAT intron-variant, reference, utr-variant-3-prime, stop-lost

Structural Variations from Database of Genomic Variants (DGV) for DPH3P1 Gene

Variant ID Type Subtype PubMed ID
nsv9825 CNV gain 18304495
nsv834027 CNV loss 17160897
nsv828794 CNV loss 20364138
nsv428380 CNV loss 18775914

Relevant External Links for DPH3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPH3P1 Gene

Disorders for DPH3P1 Gene

Relevant External Links for DPH3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for DPH3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPH3P1 Gene

Publications for DPH3P1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 60

Products for DPH3P1 Gene

Sources for DPH3P1 Gene

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