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Aliases for DPH3P1 Gene

Aliases for DPH3P1 Gene

  • Diphthamide Biosynthesis 3 Pseudogene 1 2 3
  • CSL-Type Zinc Finger-Containing Protein 1 3 4
  • C20orf143 3 4
  • DPH3B 3 4
  • ZCSL1 3 4
  • DPH3, KTI11 Homolog (S. Cerevisiae) Pseudogene 1 2
  • DPH3B, KTI11 Homolog B (S. Cerevisiae) 2
  • DPH3 Homolog B (KTI11, S. Cerevisiae) 3
  • Chromosome 20 Open Reading Frame 143 2
  • Zinc Finger, CSL Domain Containing 1 3
  • Zinc Finger, CSL-Type Containing 1 2
  • Putative DPH3 Homolog B 3

External Ids for DPH3P1 Gene

Previous HGNC Symbols for DPH3P1 Gene

  • C20orf143
  • ZCSL1
  • DPH3B

Previous GeneCards Identifiers for DPH3P1 Gene

  • GC20P061477
  • GC20P058195

Summaries for DPH3P1 Gene

Entrez Gene Summary for DPH3P1 Gene

  • This gene may represent a processed pseudogene of DPH3, GeneID: 285381, because it lacks the exon/intron structure found in the functional gene. However, it does contain an intact open reading frame and it has not been established that the predicted protein is not translated. The NCBI RefSeq Project continues to treat this as a protein coding gene in agreement with Swiss-Prot. [provided by RefSeq, Jan 2014]

GeneCards Summary for DPH3P1 Gene

DPH3P1 (Diphthamide Biosynthesis 3 Pseudogene 1) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPH3P1 Gene

Genomics for DPH3P1 Gene

Genomic Location for DPH3P1 Gene

Start:
62,844,566 bp from pter
End:
62,846,191 bp from pter
Size:
1,626 bases
Orientation:
Plus strand

Genomic View for DPH3P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DPH3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPH3P1 Gene

No data available for Regulatory Elements for DPH3P1 Gene

Proteins for DPH3P1 Gene

  • Protein details for DPH3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4G8-DPH3B_HUMAN
    Recommended name:
    Putative DPH3 homolog B
    Protein Accession:
    Q9H4G8
    Secondary Accessions:

    Protein attributes for DPH3P1 Gene

    Size:
    78 amino acids
    Molecular mass:
    8721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DPH3P1 Gene

Proteomics data for DPH3P1 Gene at MOPED

Post-translational modifications for DPH3P1 Gene

No Post-translational modifications

Other Protein References for DPH3P1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for DPH3P1 Gene

Domains for DPH3P1 Gene

Protein Domains for DPH3P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for DPH3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4G8

UniProtKB/Swiss-Prot:

DPH3B_HUMAN :
  • Q9H4G8
Family:
  • Belongs to the DPH3 family.
Similarity:
  • Contains 1 DPH-type zinc finger.
genes like me logo Genes that share domains with DPH3P1: view

No data available for Gene Families for DPH3P1 Gene

Function for DPH3P1 Gene

Gene Ontology (GO) - Molecular Function for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with DPH3P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DPH3P1 Gene

Localization for DPH3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPH3P1 Gene

Pathways for DPH3P1 Gene

SuperPathways for DPH3P1 Gene

No Data Available

Interacting Proteins for DPH3P1 Gene

Gene Ontology (GO) - Biological Process for DPH3P1 Gene

None

No data available for Pathways by source for DPH3P1 Gene

Transcripts for DPH3P1 Gene

mRNA/cDNA for DPH3P1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DPH3P1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPH3P1 Gene

No ASD Table

Relevant External Links for DPH3P1 Gene

GeneLoc Exon Structure for
DPH3P1
ECgene alternative splicing isoforms for
DPH3P1

Expression for DPH3P1 Gene

mRNA expression in normal human tissues for DPH3P1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DPH3P1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (5.5).
genes like me logo Genes that share expressions with DPH3P1: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for DPH3P1 Gene

Orthologs for DPH3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DPH3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DPH3P1 35
  • 100 (n)
  • 100 (a)
Species with no ortholog for DPH3P1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DPH3P1 Gene

ENSEMBL:
Gene Tree for DPH3P1 (if available)
TreeFam:
Gene Tree for DPH3P1 (if available)

Paralogs for DPH3P1 Gene

Selected SIMAP similar genes for DPH3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DPH3P1: view

No data available for Paralogs for DPH3P1 Gene

Variants for DPH3P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for DPH3P1 Gene

Variant ID Type Subtype PubMed ID
dgv4603n71 CNV Loss 21882294
nsv913073 CNV Loss 21882294
nsv428380 CNV Loss 18775914
dgv4614n71 CNV Loss 21882294
nsv834027 CNV Loss 17160897
nsv9825 CNV Gain 18304495
nsv913124 CNV Loss 21882294
nsv913127 CNV Loss 21882294
nsv828794 CNV Loss 20364138

Relevant External Links for DPH3P1 Gene

HapMap Linkage Disequilibrium report
DPH3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for DPH3P1 Gene

Disorders for DPH3P1 Gene

No disorders were found for DPH3P1 Gene.

No data available for UniProtKB/Swiss-Prot for DPH3P1 Gene

Publications for DPH3P1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4

Products for DPH3P1 Gene

Sources for DPH3P1 Gene

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