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Aliases for DPH3P1 Gene

Aliases for DPH3P1 Gene

  • Diphthamide Biosynthesis 3 Pseudogene 1 2 3 5
  • CSL-Type Zinc Finger-Containing Protein 1 3 4
  • C20orf143 3 4
  • DPH3B 3 4
  • ZCSL1 3 4
  • DPH3, KTI11 Homolog (S. Cerevisiae) Pseudogene 1 2
  • DPH3B, KTI11 Homolog B (S. Cerevisiae) 2
  • DPH3 Homolog B (KTI11, S. Cerevisiae) 3
  • Chromosome 20 Open Reading Frame 143 2
  • Zinc Finger, CSL Domain Containing 1 3
  • Zinc Finger, CSL-Type Containing 1 2
  • Putative DPH3 Homolog B 3

External Ids for DPH3P1 Gene

Previous HGNC Symbols for DPH3P1 Gene

  • C20orf143
  • ZCSL1
  • DPH3B

Previous GeneCards Identifiers for DPH3P1 Gene

  • GC20P061477
  • GC20P058195

Summaries for DPH3P1 Gene

Entrez Gene Summary for DPH3P1 Gene

  • This gene may represent a processed pseudogene of DPH3, GeneID: 285381, because it lacks the exon/intron structure found in the functional gene. However, it does contain an intact open reading frame and it has not been established that the predicted protein is not translated. The NCBI RefSeq Project continues to treat this as a protein coding gene in agreement with Swiss-Prot. [provided by RefSeq, Jan 2014]

GeneCards Summary for DPH3P1 Gene

DPH3P1 (Diphthamide Biosynthesis 3 Pseudogene 1) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPH3P1 Gene

Genomics for DPH3P1 Gene

Regulatory Elements for DPH3P1 Gene

Enhancers for DPH3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F062500 1.3 FANTOM5 Ensembl ENCODE 7.2 -343.0 -342965 3.2 HDGF PKNOX1 ATF1 ZNF133 ARID4B YBX1 ZNF2 GLIS2 ZNF207 ZNF143 MIR4758 ENSG00000226332 DPH3P1 OGFR DIDO1 PIR36870 GC20M062490
GH20F062787 1 FANTOM5 ENCODE 6.3 -56.5 -56515 0.2 PKNOX1 DPH3P1 OGFR DIDO1 LOC105372716 LINC00659
GH20F062588 1.2 FANTOM5 Ensembl ENCODE 5.7 -256.3 -256266 0.6 MIER1 MIER2 REST ZBTB7A SMARCB1 KDM6A C20orf166-AS1 DPH3P1 OGFR ENSG00000264490 WI2-87327B8.2
GH20F062738 1.4 FANTOM5 Ensembl ENCODE 3.1 -104.0 -104002 5.1 PKNOX1 ATF1 SIN3A GLIS2 ELK1 FOS JUNB MIER2 REST SMARCB1 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR133A2 MIR1-1HG C20orf166-AS1 MIR1-1 ENSG00000229882
GH20F062989 1.2 FANTOM5 Ensembl 2.9 +144.8 144835 0.8 PKNOX1 STAT1 MTA2 YBX1 SP1 NONO CTBP1 ZNF366 MLLT1 OGFR DPH3P1 GC20P062974 BHLHE23
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DPH3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DPH3P1 Gene

Chromosome:
20
Start:
62,844,566 bp from pter
End:
62,846,191 bp from pter
Size:
1,626 bases
Orientation:
Plus strand

Genomic View for DPH3P1 Gene

Genes around DPH3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPH3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPH3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPH3P1 Gene

Proteins for DPH3P1 Gene

  • Protein details for DPH3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4G8-DPH3B_HUMAN
    Recommended name:
    Putative DPH3 homolog B
    Protein Accession:
    Q9H4G8

    Protein attributes for DPH3P1 Gene

    Size:
    78 amino acids
    Molecular mass:
    8721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DPH3P1 Gene

Post-translational modifications for DPH3P1 Gene

No Post-translational modifications

Other Protein References for DPH3P1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for DPH3P1 Gene

Domains & Families for DPH3P1 Gene

Protein Domains for DPH3P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for DPH3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4G8

UniProtKB/Swiss-Prot:

DPH3B_HUMAN :
  • Belongs to the DPH3 family.
  • Contains 1 DPH-type zinc finger.
Family:
  • Belongs to the DPH3 family.
Similarity:
  • Contains 1 DPH-type zinc finger.
genes like me logo Genes that share domains with DPH3P1: view

No data available for Gene Families for DPH3P1 Gene

Function for DPH3P1 Gene

Gene Ontology (GO) - Molecular Function for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with DPH3P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPH3P1 Gene

Localization for DPH3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DPH3P1 Gene

Pathways & Interactions for DPH3P1 Gene

SuperPathways for DPH3P1 Gene

No Data Available

Interacting Proteins for DPH3P1 Gene

Gene Ontology (GO) - Biological Process for DPH3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPH3P1 Gene

Transcripts for DPH3P1 Gene

mRNA/cDNA for DPH3P1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPH3P1 Gene

No ASD Table

Relevant External Links for DPH3P1 Gene

GeneLoc Exon Structure for
DPH3P1
ECgene alternative splicing isoforms for
DPH3P1

Expression for DPH3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DPH3P1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DPH3P1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of DPH3P1 Gene:

DPH3P1
genes like me logo Genes that share expression patterns with DPH3P1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DPH3P1 Gene

Orthologs for DPH3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DPH3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DPH3P1 34
  • 100 (n)
Species where no ortholog for DPH3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DPH3P1 Gene

ENSEMBL:
Gene Tree for DPH3P1 (if available)
TreeFam:
Gene Tree for DPH3P1 (if available)

Paralogs for DPH3P1 Gene

(2) SIMAP similar genes for DPH3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DPH3P1: view

No data available for Paralogs for DPH3P1 Gene

Variants for DPH3P1 Gene

Sequence variations from dbSNP and Humsavar for DPH3P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs11086140 -- 62,845,124(+) TTTTT(-/T)GGATA intron-variant, nc-transcript-variant, utr-variant-5-prime
rs114033412 -- 62,845,747(+) CCATG(C/T)GGAGA intron-variant, nc-transcript-variant, downstream-variant-500B, reference, synonymous-codon
rs114220381 -- 62,846,608(+) AAGAA(A/T)AACAA intron-variant, downstream-variant-500B
rs116156065 -- 62,844,336(+) CTTGG(C/T)GCATC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs116472837 -- 62,843,838(+) AATCC(C/T)GCAGG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DPH3P1 Gene

Variant ID Type Subtype PubMed ID
nsv428380 CNV loss 18775914
nsv828794 CNV loss 20364138
nsv834027 CNV loss 17160897
nsv9825 CNV gain 18304495

Relevant External Links for DPH3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPH3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPH3P1 Gene

Disorders for DPH3P1 Gene

Relevant External Links for DPH3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPH3P1

No disorders were found for DPH3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPH3P1 Gene

Publications for DPH3P1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64

Products for DPH3P1 Gene

Sources for DPH3P1 Gene

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