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Aliases for DPEP1 Gene

Aliases for DPEP1 Gene

  • Dipeptidase 1 (Renal) 2 3 5
  • Microsomal Dipeptidase 3 4
  • Dehydropeptidase-I 3 4
  • Renal Dipeptidase 3 4
  • EC 3.4.13.19 4 61
  • HRDP 3 4
  • RDP 3 4
  • MDP 3 4
  • Testicular Tissue Protein Li 57 3
  • Dipeptidase 1 3
  • MBD1 3

External Ids for DPEP1 Gene

Previous GeneCards Identifiers for DPEP1 Gene

  • GC16P081008
  • GC16P090676
  • GC16P089390
  • GC16P089430
  • GC16P088214
  • GC16P089679
  • GC16P075374

Summaries for DPEP1 Gene

Entrez Gene Summary for DPEP1 Gene

  • The protein encoded by this gene is a kidney membrane enzyme involved in the metabolism of glutathione and other similar proteins by dipeptide hydrolysis. The encoded protein is known to regulate leukotriene activity by catalyzing the conversion of leukotriene D4 to leukotriene E4. This protein uses zinc as a cofactor and acts as a disulfide-linked homodimer. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jan 2012]

GeneCards Summary for DPEP1 Gene

DPEP1 (Dipeptidase 1 (Renal)) is a Protein Coding gene. Among its related pathways are Metabolism and Cytochrome P450 - arranged by substrate type. GO annotations related to this gene include metallopeptidase activity and dipeptidase activity. An important paralog of this gene is DPEP2.

UniProtKB/Swiss-Prot for DPEP1 Gene

  • Hydrolyzes a wide range of dipeptides. Implicated in the renal metabolism of glutathione and its conjugates. Converts leukotriene D4 to leukotriene E4; it may play an important role in the regulation of leukotriene activity.

Gene Wiki entry for DPEP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPEP1 Gene

Genomics for DPEP1 Gene

Regulatory Elements for DPEP1 Gene

Enhancers for DPEP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F089686 1.1 ENCODE 11.6 +74.0 74003 2.5 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 ZNF143 CDK10 DPEP1 VPS9D1 ZNF276 LOC105371416 FANCA PIR59284
GH16F089639 1.2 Ensembl ENCODE 10.1 +27.8 27801 2.4 ATF1 PKNOX1 DMAP1 ZNF2 ZNF48 YY1 ZNF143 ZNF207 REST KAT8 CDK10 SPIRE2 GAS8-AS1 CHMP1A DPEP1 RPL13 PIR44959
GH16F089526 0.6 ENCODE 11.3 -87.9 -87941 0.2 CTCF SAP130 GABPB1 ARID4B RAD21 DPEP1 ENSG00000274627 PIR57136
GH16F088662 1.1 ENCODE 6.1 -950.1 -950102 2.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 FOS KLF13 SNAI3-AS1 ZNF778 SNORD68 CTU2 ENSG00000259877 RPL13 ENSG00000260121 DPEP1 MVD
GH16F089616 1.2 FANTOM5 Ensembl ENCODE 5.3 +3.7 3709 1.2 KLF1 FEZF1 ELF1 ZBTB40 ZNF518A IKZF1 ZBTB33 MLLT1 ETV6 ZNF600 DBNDD1 GAS8-AS1 RPL13 SPATA33 DPEP1 PIR44959
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DPEP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DPEP1 Gene

Chromosome:
16
Start:
89,613,308 bp from pter
End:
89,640,862 bp from pter
Size:
27,555 bases
Orientation:
Plus strand

Genomic View for DPEP1 Gene

Genes around DPEP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPEP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPEP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPEP1 Gene

Proteins for DPEP1 Gene

  • Protein details for DPEP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P16444-DPEP1_HUMAN
    Recommended name:
    Dipeptidase 1
    Protein Accession:
    P16444
    Secondary Accessions:
    • D3DX80
    • Q96AK2

    Protein attributes for DPEP1 Gene

    Size:
    411 amino acids
    Molecular mass:
    45674 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    • Homodimer; disulfide-linked.

    Three dimensional structures from OCA and Proteopedia for DPEP1 Gene

neXtProt entry for DPEP1 Gene

Selected DME Specific Peptides for DPEP1 Gene

P16444:
  • RNVPDDVL
  • APVIFSHS
  • DGHNDLP
  • IDSSLGVLR
  • CNTPWADNWLVD
  • VGGQFWS
  • GLEDVSKYPDL
  • THTNIPKL
  • SLVMVNF
  • WWLWPLVAVC

Post-translational modifications for DPEP1 Gene

  • Glycosylation at Asn 57, Asn 279, Asn 332, and Asn 358
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Abcam antibodies for DPEP1
  • Cloud-Clone Corp. Antibodies for DPEP1

Domains & Families for DPEP1 Gene

Gene Families for DPEP1 Gene

IUPHAR :

Protein Domains for DPEP1 Gene

Suggested Antigen Peptide Sequences for DPEP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P16444

UniProtKB/Swiss-Prot:

DPEP1_HUMAN :
  • Belongs to the peptidase M19 family.
Family:
  • Belongs to the peptidase M19 family.
genes like me logo Genes that share domains with DPEP1: view

Function for DPEP1 Gene

Molecular function for DPEP1 Gene

GENATLAS Biochemistry:
dipeptidase 1 (renal)
UniProtKB/Swiss-Prot CatalyticActivity:
Hydrolysis of dipeptides.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by L-penicillamine.
UniProtKB/Swiss-Prot Function:
Hydrolyzes a wide range of dipeptides. Implicated in the renal metabolism of glutathione and its conjugates. Converts leukotriene D4 to leukotriene E4; it may play an important role in the regulation of leukotriene activity.

Enzyme Numbers (IUBMB) for DPEP1 Gene

Gene Ontology (GO) - Molecular Function for DPEP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0008233 peptidase activity IEA --
GO:0008235 metalloexopeptidase activity IEA,TAS 2303490
GO:0008237 metallopeptidase activity IEA --
GO:0008239 dipeptidyl-peptidase activity IEA --
genes like me logo Genes that share ontologies with DPEP1: view
genes like me logo Genes that share phenotypes with DPEP1: view

Human Phenotype Ontology for DPEP1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for DPEP1 Gene

MGI Knock Outs for DPEP1:

Animal Model Products

  • Taconic Biosciences Mouse Models for DPEP1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for DPEP1 Gene

Localization for DPEP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DPEP1 Gene

Apical cell membrane; Lipid-anchor, GPI-anchor. Cell projection, microvillus membrane; Lipid-anchor, GPI-anchor. Note=Brush border membrane.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DPEP1 gene
Compartment Confidence
plasma membrane 5
extracellular 5
nucleus 5
mitochondrion 1
peroxisome 1
cytosol 1

Gene Ontology (GO) - Cellular Components for DPEP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space ISS --
GO:0005886 plasma membrane IEA,TAS 20031578
GO:0016020 membrane IEA --
GO:0016324 apical plasma membrane IEA --
GO:0031225 anchored component of membrane IEA --
genes like me logo Genes that share ontologies with DPEP1: view

Pathways & Interactions for DPEP1 Gene

genes like me logo Genes that share pathways with DPEP1: view

Pathways by source for DPEP1 Gene

Gene Ontology (GO) - Biological Process for DPEP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0006691 leukotriene metabolic process TAS --
GO:0006749 glutathione metabolic process TAS 20031578
GO:0006805 xenobiotic metabolic process TAS --
GO:0006915 apoptotic process IEA --
genes like me logo Genes that share ontologies with DPEP1: view

No data available for SIGNOR curated interactions for DPEP1 Gene

Drugs & Compounds for DPEP1 Gene

(15) Drugs for DPEP1 Gene - From: DrugBank, DGIdb, IUPHAR, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Cilastatin Approved Pharma Inhibition, Inhibitor, inhibitor, Target 30
Zinc Approved Pharma 2231
Doripenem Approved, Investigational Pharma Enzyme, substrate 0

(15) Additional Compounds for DPEP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with DPEP1: view

Transcripts for DPEP1 Gene

Unigene Clusters for DPEP1 Gene

Dipeptidase 1 (renal):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPEP1 Gene

No ASD Table

Relevant External Links for DPEP1 Gene

GeneLoc Exon Structure for
DPEP1
ECgene alternative splicing isoforms for
DPEP1

Expression for DPEP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DPEP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DPEP1 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x19.2), Pancreas (x15.8), and Kidney - Cortex (x12.0).

Protein differential expression in normal tissues from HIPED for DPEP1 Gene

This gene is overexpressed in Urine (22.3), Ovary (18.4), Testis (13.1), and Kidney (11.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DPEP1 Gene



NURSA nuclear receptor signaling pathways regulating expression of DPEP1 Gene:

DPEP1

SOURCE GeneReport for Unigene cluster for DPEP1 Gene:

Hs.109
genes like me logo Genes that share expression patterns with DPEP1: view

Primer Products

No data available for Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DPEP1 Gene

Orthologs for DPEP1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for DPEP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DPEP1 35
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DPEP1 34 35
  • 84.1 (n)
dog
(Canis familiaris)
Mammalia DPEP1 34 35
  • 82.03 (n)
rat
(Rattus norvegicus)
Mammalia Dpep1 34
  • 77.42 (n)
mouse
(Mus musculus)
Mammalia Dpep1 34 16 35
  • 76.6 (n)
oppossum
(Monodelphis domestica)
Mammalia DPEP1 35
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DPEP1 35
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves DPEP1 34 35
  • 71.32 (n)
lizard
(Anolis carolinensis)
Reptilia DPEP1 35
  • 55 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dpep1 34
  • 61.43 (n)
zebrafish
(Danio rerio)
Actinopterygii dpep1 34 35
  • 61 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG6154 36 34 35
  • 57.63 (n)
CG5917 36
  • 44 (a)
CG5282 36 35
  • 28 (a)
CG34420 35
  • 19 (a)
ManyToMany
CG42750 35
  • 14 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002634 34
  • 57.18 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU09538 34
  • 54.38 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 52 (a)
ManyToMany
-- 35
  • 50 (a)
ManyToMany
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC3A11.10c 34
  • 47.73 (n)
Species where no ortholog for DPEP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DPEP1 Gene

ENSEMBL:
Gene Tree for DPEP1 (if available)
TreeFam:
Gene Tree for DPEP1 (if available)

Paralogs for DPEP1 Gene

Paralogs for DPEP1 Gene

(2) SIMAP similar genes for DPEP1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with DPEP1: view

Variants for DPEP1 Gene

Sequence variations from dbSNP and Humsavar for DPEP1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
VAR_036496 A colorectal cancer sample
rs10221116 -- 89,623,321(+) CCGGC(G/T)TCAAG intron-variant
rs1041965 -- 89,630,435(+) TGTGG(C/T)CCCTT upstream-variant-2KB, reference, missense
rs1062464 -- 89,638,312(-) TGTGG(C/G)CAGCA intron-variant, utr-variant-3-prime
rs111210185 -- 89,634,901(+) TTCCC(C/T)TCCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DPEP1 Gene

Variant ID Type Subtype PubMed ID
nsv952078 CNV deletion 24416366
nsv573739 CNV gain 21841781
nsv573738 CNV loss 21841781
nsv509639 CNV insertion 20534489
nsv482951 CNV loss 15286789
nsv428331 CNV gain+loss 18775914
nsv1930 CNV insertion 18451855
nsv1929 CNV insertion 18451855
nsv1149554 CNV insertion 26484159
nsv1141743 CNV deletion 24896259
nsv1123085 CNV deletion 24896259
nsv1071351 CNV deletion 25765185
nsv1071350 CNV deletion 25765185
nsv1066382 CNV gain 25217958
nsv1063483 CNV gain 25217958
nsv1057351 CNV loss 25217958
nsv103438 CNV deletion 16902084
esv7562 CNV gain 19470904
esv3639590 CNV loss 21293372
esv3639589 CNV loss 21293372
esv2762221 CNV gain+loss 21179565
esv2715188 CNV deletion 23290073
esv2715187 CNV deletion 23290073
esv2715186 CNV deletion 23290073
esv2715184 CNV deletion 23290073
esv2715183 CNV deletion 23290073
esv2715182 CNV deletion 23290073
esv2676847 CNV deletion 23128226
esv24216 CNV loss 19812545
esv1355826 CNV insertion 17803354
esv1242032 CNV insertion 17803354
dgv1388n106 CNV deletion 24896259

Variation tolerance for DPEP1 Gene

Residual Variation Intolerance Score: 62.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.59; 65.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DPEP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPEP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DPEP1 Gene

Disorders for DPEP1 Gene

Relevant External Links for DPEP1

Genetic Association Database (GAD)
DPEP1
Human Genome Epidemiology (HuGE) Navigator
DPEP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DPEP1

No disorders were found for DPEP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPEP1 Gene

Publications for DPEP1 Gene

  1. Crystal structure of human renal dipeptidase involved in beta-lactam hydrolysis. (PMID: 12144777) Nitanai Y. … Tsujimoto M. (J. Mol. Biol. 2002) 3 4 22 64
  2. Gene structural analysis and expression of human renal dipeptidase. (PMID: 7764673) Satoh S. … Kohsaka M. (Biotechnol. Prog. 1994) 3 4 22 64
  3. Importance of Glu-125 in the catalytic activity of human renal dipeptidase. (PMID: 8097406) Adachi H. … Tsujimoto M. (Biochim. Biophys. Acta 1993) 3 4 22 64
  4. Characterization of the glycosyl-phosphatidylinositol-anchored human renal dipeptidase reveals that it is more extensively glycosylated than the pig enzyme. (PMID: 2137335) Hooper N.M. … Turner A.J. (Biochem. J. 1990) 3 4 22 64
  5. Primary structure of human microsomal dipeptidase deduced from molecular cloning. (PMID: 2303490) Adachi H. … Nakazato H. (J. Biol. Chem. 1990) 3 4 22 64

Products for DPEP1 Gene

Sources for DPEP1 Gene

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