DNMT3A Gene
protein-coding GIFtS : 70
GCID: GC02 M025455
DNA (cytosine-5-)-methyltransferase 3 alpha
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Aliasesfor DNMT3A gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases DNA (Cytosine-5-)-Methyltransferase 3 Alpha 1 2 DNA (Cytosine-5)-Methyltransferase 3A2 M.HsaIIIA2 3 DNA Cytosine Methyltransferase 3A22 DNA MTase HsaIIIA2 3 Dnmt3a3 EC 2.1.1.373 8 DNA Methyltransferase HsaIIIA3 DNMT3A22
Export aliases for DNMT3A gene to outside databases Previous GC identifers: GC02M025377 GC02M025548 GC02M025430 GC02M025367 GC02M025194
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Summariesfor DNMT3A gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for DNMT3A : CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a DNA methyltransferase that is thought to function in de novo methylation, rather than maintenance methylation. The protein localizes to the cytoplasm and nucleus and its expression is developmentally regulated. Alternative splicing results in multiple transcript variants encoding different isoforms. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: DNM3A_HUMAN, Q9Y6K1 Function : Required for genome-wide de novo methylation and is essential for the establishment of DNA methylationpatterns during development. DNA methylation is coordinated with methylation of histones. It modifies DNA in a non-processive manner and also methylates non-CpG sites. May preferentially methylate DNA linker between 2 nucleosomal cores and is inhibited by histone H1. Plays a role in paternal and maternal imprinting. Required for methylation of most imprinted loci in germ cells. Acts as a transcriptional corepressor for ZNF238. Can actively repress transcription through the recruitment of HDAC activity (By similarity) summary
for DNMT3A : DNA methyltransferase (DNMT) add methyl groups to DNA to effect gene expression. There are three types ofDNMTs. DNMT1 is predominately responsible for hemimethylated CpG island methylation, DNMT2 in fact transfersmethyl groups to RNA not DNA, hence has been renamed to tRNA aspartic acid methyltransferase 1 (TRDMT1) andDNMT3 is responsible for unmethylated CpG island methylation. Gene Wiki entry for DNMT3A
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Genomic Viewsfor DNMT3A gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_022184.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DNMT3A gene promoter: p53 YY1 Other transcription factors Search SABiosciences Chromatin IP Primers for DNMT3A Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DNMT3A
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p23 Ensembl cytogenetic band: 2p23.3 HGNC cytogenetic band: 2p23 DNMT3A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M025455: view genomic region
(about GC identifiers )
Start:
25,455,845 bp from pter
End:
25,565,459 bp from pter
Size:
109,615 bases
Orientation:
minus strand
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Proteinsfor DNMT3A gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DNM3A_HUMAN, Q9Y6K1 (See
protein sequence )Recommended Name: DNA (cytosine-5)-methyltransferase 3A Size : 912 amino acids; 101858 Da
Subunit : Heterotetramer composed of 1 DNMT3A homodimer and 2 DNMT3L subunits (DNMT3L-DNMT3A-DNMT3A-DNMT3L). Interactswith UBC9, PIAS1 and PIAS2 (By similarity). Binds the ZNF238 transcriptional repressor. Interacts with SETDB1. Associates with HDAC1 through its ADD domain. Interacts with UHRF1 (By similarity). Interacts with DNMT1 and DNMT3B. Interacts with the PRC2/EED-EZH2 complex. Interacts with MPHOSPH8. Interacts with histone H3 that is not methylated at 'Lys-4' (H3K4)
Subcellular location : Nucleus. Cytoplasm. Note=Accumulates in the major satellite repeats at pericentricheterochromatin (By similarity)
Caution : It is uncertain whether Met-1 or Met-4 is the initiator
Sequence caution : Sequence=AAL57039.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=AAN40037.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
5 PDB 3D structures from and Proteopedia for DNMT3A :2QRV (3D)
  3A1A (3D)
  3A1B (3D)
  3LLR (3D)
  3SVM (3D)
 
Secondary accessions : E9PEB8 Q86TE8 Q86XF5 Q8IZV0 Q8WXU9Alternative promoter usage, Alternative splicing : 3 isoforms : Q9Y6K1-1 Q9Y6K1-2 Q9Y6K1-3 (Produced by alternative splicing)Explore the universe of human proteins at neXtProt for DNMT3A: NX_Q9Y6K1 Post-translational modifications:
Sumoylated; sumoylation disrupts the ability to interact with histone deacetylases (HDAC1 and HDAC2) and repress transcription (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9Y6K1 4/21 DME Specific Peptides for DNMT3A (Q9Y6K1 ) (see all 21 )DNMT3A Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (4 alternative transcripts):
NP_072046.2 NP_715640.2 NP_783328.1 NP_783329.1 ENSEMBL proteins: ENSP00000370122 ENSP00000324375 ENSP00000264709 ENSP00000370132 ENSP00000384237 ENSP00000384852 Human Recombinant Protein Products: Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8 ): About this table
DNMT3A for ontologies About GeneDecksing DNMT3A Antibody Products: Assay Products for DNMT3A:
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Protein
Domains / Familiesfor DNMT3A gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DNMT3A for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q9Y6K1 ProtoNet protein and cluster: Q9Y6K1
1 Blocks protein family : IPB000313 PWWP domain UniProtKB/Swiss-Prot: DNM3A_HUMAN, Q9Y6K1 Domain : The PWWP domain is essential for targeting to pericentric heterochromatinSimilarity : Belongs to the C5-methyltransferase familySimilarity : Contains 1 ADD domainSimilarity : Contains 1 GATA-type zinc fingerSimilarity : Contains 1 PHD-type zinc fingerSimilarity : Contains 1 PWWP domain
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Functionfor DNMT3A gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DNM3A_HUMAN, Q9Y6K1 Function : Required for genome-wide de novo methylation and is essential for the establishment of DNA methylationpatterns during development. DNA methylation is coordinated with methylation of histones. It modifies DNA in a non-processive manner and also methylates non-CpG sites. May preferentially methylate DNA linker between 2 nucleosomal cores and is inhibited by histone H1. Plays a role in paternal and maternal imprinting. Required for methylation of most imprinted loci in germ cells. Acts as a transcriptional corepressor for ZNF238. Can actively repress transcription through the recruitment of HDAC activity (By similarity) Catalytic activity : S-adenosyl-L-methionine + DNA = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosineEnzyme regulation : Activated by binding to the regulatory factor DNMT3L (By similarity)
Genatlas biochemistry entry for DNMT3A : DNA (cytosine -5)-methyltransferase 3 alpha ,abundantly expressed in ES cells but at very low levels in differentiated embryoid bodies or adult tissues,essential for de novo DNA methylation and development (at least in mouse) Enzyme Number (IUBMB): EC 2.1.1.37 1 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): DNMT3A (NM_153759 ) Sino Biological Human cDNA Clone for DNMT3A DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DNMT3A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNMT3A
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNMT3A
Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7 ): About this table
DNMT3A for ontologies About GeneDecksing Animal Models: Mouse knock-outs for DNMT3A: Dnmt3a tm3.2Enl Dnmt3a tm2Enl Dnmt3a tm1.1Jae 11 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Dnmt3a) :
DNMT3A for phenotypes About GeneDecksing
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Pathways & Interactionsfor DNMT3A gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/8 super-pathways (see all 8 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Methionine metabolism 2 Selected targets of Oct-3/4 3 One Carbon Metabolism 4 Validated targets of C-MYC transcriptional repression 5 DNA Methylation and Transcriptional Repression
Pathway sources See GeneCards unified pathways Show all pathways 2 EMD Millipore Pathways for DNMT3A 1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for DNMT3A 1
Cell Signaling Technology (CST) Pathway for DNMT3A 1 GeneGo (Thomson Reuters) Pathway for DNMT3A 2 BioSystems Pathways for DNMT3A 2
Kegg Pathways (Kegg details for DNMT3A) :
DNMT3A for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for DNMT3A STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/69 Interacting proteins for DNMT3A (Q9Y6K1 1 , 2 , 3 ENSP00000264709 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 69 )About this table Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13 ): About this table
DNMT3A for ontologies About GeneDecksing
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Drugs & Compoundsfor DNMT3A gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
DNMT3A for compounds About GeneDecksing Compounds for DNMT3A available from Tocris Bioscience About this table Compound Action
CAS
# RG 108 Non-nucleoside DNA methyltransferase inhibitor [48208-26-0] Zebularine DNA methyltransferase and cytidine deaminase inhibitor [3690-10-6] Decitabine DNA methyltransferase inhibitor [2353-33-5] 5-Azacytidine DNA methyltransferase inhibitor [320-67-2]
3 HMDB Compounds for DNMT3A About this table 8 Novoseek chemical compound relationships for DNMT3A gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
5-aza-2'deoxycytidine
79.8
13
20372798 (2), 12665573 (1), 17556066 (1), 17998942 (1) (see all 7 )
5-methylcytosine
72.4
1
12242669 (1)
cytosine
66.3
12
19921333 (3), 15799776 (2), 19450891 (1), 12138111 (1) (see all 7 )
s-adenosylmethionine
53.2
16
15671018 (3), 16829525 (2), 17107663 (1)
azathioprine
16
1
15547111 (1)
zinc
3.22
6
15362956 (1), 19139273 (1), 10857753 (1)
folate
2.03
1
19451595 (1)
oligonucleotide
0
2
15362956 (1), 15854647 (1)
Search CenterWatch for drugs/clinical trials and news about DNMT3A / DNM3A
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Transcriptsfor DNMT3A gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for DNMT3A gene (4 alternative transcripts): NM_022552.4 NM_153759.3 NM_175629.2 NM_175630.1 Unigene Cluster for DNMT3A:
DNA (cytosine-5-)-methyltransferase 3 alpha Hs.515840 [show with all ESTs ] Unigene Representative Sequence: AB208833 15 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000380746 (uc002rgb.3 ) ENST00000321117 (uc002rgc.3 ) ENST00000264709 (uc002rgd.3 )ENST00000380756 (uc010eyi.3 ) ENST00000402667 ENST00000474887 ENST00000482935 ENST00000491288 ENST00000466601 ENST00000461228 ENST00000474807 ENST00000484184 ENST00000470983 ENST00000496570 ENST00000406659 (uc002rgf.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): DNMT3A (NM_153759 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DNMT3A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNMT3A
Additional cDNA sequence: AB208833.1 AF067972.2 AF331856.1 AF480163.1 AK025230.1 BC018214.1 BC023612.2 BC032392.1 BC043617.1 BC051864.1
15 DOTS entries : DT.95110184 DT.114106
DT.100749646 DT.92430946 DT.40285287 DT.100749645 DT.100662074 DT.99928292 DT.102823845 DT.121026073 DT.121026102 DT.100749647 DT.92430938 DT.97780601 DT.99954735 24/207 AceView cDNA sequences (see all 207 ):
BC023612 NM_175630 BM873445 AA969118 AI670957 AA364876 AI634419 BC018214 AI023308 BF223723 AF067972 AI092878 AW590851 BQ434593 AI971537 BE466006 AI861939 AA573317 CB852889 AI392759 W67657 AF480163 CR618290 BQ721518 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for DNMT3A (see all 11 ) About this scheme ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b · 13c ^ 14 ^ 15 ^ 16 ^ SP1 :                       -       -     -     -                 SP2 :                                                     SP3 :                                                     SP4 :                       -   -   -   -     -     -                 SP5 :           -                                          
ExUns: 17 ^ 18 ^ 19a · 19b ^ 20a · 20b · 20c ^ 21 ^ 22 ^ 23a · 23b ^ 24a · 24b ^ 25 ^ 26 SP1 :         -   -                     SP2 :         -                       SP3 :                               SP4 :                               SP5 :                              
ECgene alternative splicing isoforms for DNMT3A
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Expression for DNMT3A gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section DNMT3A expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CAATAACCCT
About this image DNMT3A expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See DNMT3A Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for DNMT3A SOURCE GeneReport for Unigene cluster: Hs.515840 UniProtKB/Swiss-Prot: DNM3A_HUMAN, Q9Y6K1 Tissue specificity : Highly expressed in fetal tissues, skeletal muscle, heart, peripheral blood mononuclear cells,kidney, and at lower levels in placenta, brain, liver, colon, spleen, small intestine and lung SABiosciences Expression via Pathway-Focused PCR Arrays including DNMT3A : Epigenetic Chromatin Modification Enzymes in human mouse rat Polycomb & Trithorax Complexes in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DNMT3ABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat DNMT3A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DNMT3A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DNMT3A In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNMT3A
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Orthologsfor DNMT3A gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for DNMT3A gene from 5/17 species (see all 17 ) About this table
ENSEMBL Gene Tree for DNMT3A (if available)TreeFam Gene Tree for DNMT3A (if available)
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Paralogsfor DNMT3A gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for DNMT3A gene DNMT3L 2 DNMT3B 2 2 SIMAP similar genes for DNMT3A using alignment to 4 protein entries: DNM3A_HUMAN (see all proteins ):DNMT3B DNMT3L
DNMT3A for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for DNMT3A PGOHUM00000240077
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Genomic Variantsfor DNMT3A gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
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Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for DNMT3A (25455845 - 25565459 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for DNMT3A 3 CNVs : 97795 73090 7259 Human Gene Mutation Database (HGMD) : DNMT3A 2 SABiosciences Cancer Mutation PCR Assays for DNMT3A :
2 SABiosciences Cancer Mutation PCR Arrays containing DNMT3A :
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DNMT3A
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Disorders
/ Diseasesfor DNMT3A gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
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DNMT3A for disorders About GeneDecksing
OMIM gene information: 602769
OMIM disorders : --20/57 diseases for DNMT3A (see all 57 ): About MalaCards testicular germ cell tumor germ cell tumor spina bifida myelomonocytic leukemia monocytic leukemia chronic myelomonocytic leukemia acute monocytic leukemia oral leukoplakia systemic lupus erythematosus leukoplakia lupus erythematosus lymphosarcoma transitional cell carcinoma acute lymphoblastic leukemia acute myeloid leukemia lymphoblastic leukemia epithelial ovarian cancer myeloid leukemia kaposi's sarcoma ovarian cancer 1 disease from the University of Copenhagen DISEASES database for DNMT3A :Acute myeloid leukemia 10/16 Novoseek disease relationships for DNMT3A gene (see all 16 ) About this table
Human Genome Epidemiology (HuGE) Navigator: DNMT3A (14 documents) Export disorders for DNMT3A gene to outside databases
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Publicationsfor DNMT3A gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for DNMT3A gene, integrated from 9 sources (see all 280 ): (articles sorted by number of sources associating them with DNMT3A) Utopia : connect your pdf to the dynamic world of online information
Cloning, expression and chromosome locations of the human DNMT3 gene family. (PubMed id 10433969) 1 , 2 , 3, 9 Xie S....Li E. (1999) A novel Dnmt3a isoform produced from an alternative promoter localizes to euchromatin and its expression correlates with active de novo methylation. (PubMed id 12138111) 1 , 2 , 9 Chen T.... Li E. (2002) Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. (PubMed id 17713477) 1 , 2 , 9 Jia D....Cheng X. (2007) Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain. (PubMed id 19834512) 1 , 2 , 9 Otani J....Shirakawa M. (2009) The histone methyltransferase SETDB1 and the DNA methyltransferase DNMT3A interact directly and localize to promoters silenced in cancer cells. (PubMed id 16682412) 1 , 2 , 9 Li H.... Pfeifer G.P. (2006) The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors. (PubMed id 10325416) 1 , 2 , 9 Robertson K.D.... Jones P.A. (1999) Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. (PubMed id 12145218) 1 , 2 , 9 Kim G.D....Pradhan S. (2002) Mutational spectrum analysis of chronic myelomonocyti c leukemia includes genes associated with epigenetic regulation: UTX, EZH2, and DNMT3A. (PubMed id 21828135) 1 , 2 Jankowska A.M....Maciejewski J.P. (2011) MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a. (PubMed id 22086334) 1 , 2 Chang Y....Cheng X. (2011) The Polycomb group protein EZH2 directly controls DNA methylation. (PubMed id 16357870) 1 , 2 Vire E.... Fuks F. (2006)
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External Searches for DNMT3A gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DNMT3A gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing DNMT3A gene
(According to HUGE )
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Specialized Databases showing DNMT3A gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for DNMT3A gene: Search GeneIP for patents involving DNMT3A GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DNMT3A gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for DNMT3A OriGene shRNA RFP for DNMT3A OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for DNMT3A OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DNMT3A OriGene Protein Over-expression Lysate for DNMT3A Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for DNMT3A OriGene 3'-UTR Clone for DNMT3A OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNMT3A Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for DNMT3A OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for DNMT3A OriGene Custom Protein Services for DNMT3A OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DNMT3A QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DNMT3A QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DNMT3A QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat DNMT3A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DNMT3A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DNMT3A
Antibodies & Assays for DNMT3A  
DNMT3A Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNMT3A
ThermoFisher Antibody for DNMT3A
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNMT3A
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