Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DNMBP-AS1 Gene

Subcategory (RNA class) for DNMBP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNMBP-AS1 Gene

  • DNMBP Antisense RNA 1 2 3 5
  • DNMBP Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 93 2
  • NCRNA00093 3
  • BA287G8.2 3

External Ids for DNMBP-AS1 Gene

Previous HGNC Symbols for DNMBP-AS1 Gene

  • NCRNA00093

Previous GeneCards Identifiers for DNMBP-AS1 Gene

  • GC10P101687

Summaries for DNMBP-AS1 Gene

GeneCards Summary for DNMBP-AS1 Gene

DNMBP-AS1 (DNMBP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNMBP-AS1 Gene

Genomics for DNMBP-AS1 Gene

Regulatory Elements for DNMBP-AS1 Gene

Enhancers for DNMBP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F099905 0.4 ENCODE 18.6 -20.5 -20464 2.8 CTCF CREB3L1 JUN SIN3A RAD21 ZFHX2 SMC3 FOS TCF7L2 EGR2 DNMBP DNMBP-AS1 GC10P099882
GH10F099845 1.1 Ensembl ENCODE 18.1 -80.9 -80889 1.4 ATF1 PKNOX1 KLF17 ZSCAN9 DNMT3B ZNF2 RAD21 ZNF121 GATA2 ZNF143 DNMBP-AS1 NANOGP6 ABCC2 DNMBP EBAG9P1 GC10P099874
GH10F099849 0.5 Ensembl ENCODE 15.7 -76.8 -76806 2.0 TFAP4 ZNF792 SAP130 CEBPG DMAP1 THRB ZSCAN9 ZNF644 RARA TEAD3 DNMBP DNMBP-AS1 EBAG9P1 GC10P099874 NANOGP6
GH10F099958 0.8 ENCODE 11.9 +31.4 31449 0.7 BHLHE40 ZBTB33 NFE2 EMSY DNMBP-AS1 DNMBP
GH10F099962 0.9 Ensembl ENCODE 11.8 +38.7 38749 6.3 CTCF TAF1 JUN MAX SIN3A RAD21 ZNF121 GATA3 SCRT2 EED DNMBP DNMBP-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DNMBP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DNMBP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001763471 490 201 ZNF263 OSR2 PKNOX1 GLIS1 PRDM10 NR2F6 PRDM1 ZKSCAN1
ENSR00001763472 890 201 ELF3 SOX13 CEBPG ZNF644 RARA HNF4G NR2F6 PRDM10 MIXL1 THAP11
ENSR00001763473 1590 801

Genomic Location for DNMBP-AS1 Gene

Chromosome:
10
Start:
99,927,010 bp from pter
End:
99,958,998 bp from pter
Size:
31,989 bases
Orientation:
Plus strand

Genomic View for DNMBP-AS1 Gene

Genes around DNMBP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNMBP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNMBP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNMBP-AS1 Gene

Proteins for DNMBP-AS1 Gene

Post-translational modifications for DNMBP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNMBP-AS1 Gene

Domains & Families for DNMBP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNMBP-AS1 Gene

Function for DNMBP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNMBP-AS1 Gene

Localization for DNMBP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNMBP-AS1 Gene

Pathways & Interactions for DNMBP-AS1 Gene

SuperPathways for DNMBP-AS1 Gene

No Data Available

Interacting Proteins for DNMBP-AS1 Gene

Gene Ontology (GO) - Biological Process for DNMBP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNMBP-AS1 Gene

Transcripts for DNMBP-AS1 Gene

mRNA/cDNA for DNMBP-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DNMBP-AS1 Gene

DNMBP antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNMBP-AS1 Gene

No ASD Table

Relevant External Links for DNMBP-AS1 Gene

GeneLoc Exon Structure for
DNMBP-AS1
ECgene alternative splicing isoforms for
DNMBP-AS1

Expression for DNMBP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DNMBP-AS1 Gene

SOURCE GeneReport for Unigene cluster for DNMBP-AS1 Gene:

Hs.656104
genes like me logo Genes that share expression patterns with DNMBP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DNMBP-AS1 Gene

Orthologs for DNMBP-AS1 Gene

Evolution for DNMBP-AS1 Gene

ENSEMBL:
Gene Tree for DNMBP-AS1 (if available)
TreeFam:
Gene Tree for DNMBP-AS1 (if available)

No data available for Orthologs for DNMBP-AS1 Gene

Paralogs for DNMBP-AS1 Gene

No data available for Paralogs for DNMBP-AS1 Gene

Variants for DNMBP-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNMBP-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10709000 -- 99,933,516(+) GTTCA(-/G)GGGGA intron-variant
rs10786578 -- 99,930,293(+) GTCAA(C/T)TGTTC intron-variant, reference, synonymous-codon
rs10883426 -- 99,925,527(+) TCTCC(C/T)GCCTC intron-variant, upstream-variant-2KB
rs10883428 -- 99,930,622(+) ATCCA(A/G)GTCAT intron-variant, reference, synonymous-codon
rs10883429 -- 99,939,547(+) ACTCC(C/T)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNMBP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2678240 CNV deletion 23128226
esv3624353 CNV loss 21293372
esv3624354 CNV loss 21293372
nsv552045 CNV gain 21841781
nsv831960 CNV gain 17160897
nsv948162 CNV duplication 23825009

Relevant External Links for DNMBP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNMBP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNMBP-AS1 Gene

Disorders for DNMBP-AS1 Gene

Relevant External Links for DNMBP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNMBP-AS1

No disorders were found for DNMBP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNMBP-AS1 Gene

Publications for DNMBP-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for DNMBP-AS1 Gene

Sources for DNMBP-AS1 Gene

Content
Loading form....