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Aliases for DNMBP Gene

Aliases for DNMBP Gene

  • Dynamin Binding Protein 2 3
  • Scaffold Protein TUBA 2 3
  • KIAA1010 4 6
  • TUBA 3 6
  • Dynamin-Binding Protein 3
  • Scaffold Protein Tuba 4
  • ARHGEF36 3

External Ids for DNMBP Gene

Summaries for DNMBP Gene

Entrez Gene Summary for DNMBP Gene

  • DNMBP belongs to the DBL (MIM 311030) family of guanine nucleotide exchange factors and plays a role in the regulation of cell junctions (Otani et al., 2006 [PubMed 17015620]).[supplied by OMIM, Mar 2008]

GeneCards Summary for DNMBP Gene

DNMBP (Dynamin Binding Protein) is a Protein Coding gene. Among its related pathways are Regulation of CDC42 activity. GO annotations related to this gene include Rho guanyl-nucleotide exchange factor activity. An important paralog of this gene is ARHGEF37.

UniProtKB/Swiss-Prot for DNMBP Gene

  • Scaffold protein that links dynamin with actin-regulating proteins. May play a role in membrane trafficking between the cell surface and the Golgi (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNMBP Gene

Genomics for DNMBP Gene

Genomic Location for DNMBP Gene

Start:
99,875,577 bp from pter
End:
100,009,953 bp from pter
Size:
134,377 bases
Orientation:
Minus strand

Genomic View for DNMBP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DNMBP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNMBP Gene

Regulatory Elements for DNMBP Gene

Proteins for DNMBP Gene

  • Protein details for DNMBP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6XZF7-DNMBP_HUMAN
    Recommended name:
    Dynamin-binding protein
    Protein Accession:
    Q6XZF7
    Secondary Accessions:
    • Q8IVY3
    • Q9Y2L3

    Protein attributes for DNMBP Gene

    Size:
    1577 amino acids
    Molecular mass:
    177347 Da
    Quaternary structure:
    • Binds DNM1 via its N-terminal SH3 domains. The C-terminal SH3 domain binds a complex containing actin, tubulin, Hsp70 and actin-regulatory proteins, such as ENAH, EVL, WASL, WIRE, CR16, WAVE1 and NAP1L1 (By similarity). Interacts with FASLG.

    Three dimensional structures from OCA and Proteopedia for DNMBP Gene

    Alternative splice isoforms for DNMBP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DNMBP Gene

Proteomics data for DNMBP Gene at MOPED

Post-translational modifications for DNMBP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DNMBP Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DNMBP Gene

Domains for DNMBP Gene

Gene Families for DNMBP Gene

HGNC:
  • ARHGEF :Rho guanine nucleotide exchange factors

Protein Domains for DNMBP Gene

UniProtKB/Swiss-Prot:

DNMBP_HUMAN
Domain:
  • Contains 1 BAR domain.:
    • Q6XZF7
  • Contains 1 DH (DBL-homology) domain.:
    • Q6XZF7
  • Contains 6 SH3 domains.:
    • Q6XZF7
genes like me logo Genes that share domains with DNMBP: view

Function for DNMBP Gene

Molecular function for DNMBP Gene

UniProtKB/Swiss-Prot Function: Scaffold protein that links dynamin with actin-regulating proteins. May play a role in membrane trafficking between the cell surface and the Golgi (By similarity).

Gene Ontology (GO) - Molecular Function for DNMBP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA --
GO:0005515 protein binding IPI 16413298
genes like me logo Genes that share ontologies with DNMBP: view

Phenotypes for DNMBP Gene

genes like me logo Genes that share phenotypes with DNMBP: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for DNMBP Gene

Localization for DNMBP Gene

Subcellular locations from UniProtKB/Swiss-Prot for DNMBP Gene

Cytoplasm. Golgi apparatus, Golgi stack. Cytoplasm, cytoskeleton. Cell junction, synapse. Note=Localized to synapses and Golgi stacks. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DNMBP Gene COMPARTMENTS Subcellular localization image for DNMBP gene
Compartment Confidence
cytosol 3
nucleus 3
cytoskeleton 2
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for DNMBP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
GO:0005794 Golgi apparatus --
GO:0005795 Golgi stack IEA --
GO:0005856 cytoskeleton IEA --
GO:0030054 cell junction IEA --
genes like me logo Genes that share ontologies with DNMBP: view

Pathways for DNMBP Gene

SuperPathways for DNMBP Gene

genes like me logo Genes that share pathways with DNMBP: view

Pathways by source for DNMBP Gene

1 BioSystems pathway for DNMBP Gene

Gene Ontology (GO) - Biological Process for DNMBP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035023 regulation of Rho protein signal transduction --
GO:0035556 intracellular signal transduction IEA --
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with DNMBP: view

Transcripts for DNMBP Gene

Unigene Clusters for DNMBP Gene

Dynamin binding protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNMBP Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c ^ 12
SP1:
SP2:
SP3: - - -
SP4: -
SP5:
SP6:

Relevant External Links for DNMBP Gene

GeneLoc Exon Structure for
DNMBP
ECgene alternative splicing isoforms for
DNMBP

Expression for DNMBP Gene

mRNA expression in normal human tissues for DNMBP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DNMBP Gene

SOURCE GeneReport for Unigene cluster for DNMBP Gene Hs.500771

mRNA Expression by UniProt/SwissProt for DNMBP Gene

Q6XZF7-DNMBP_HUMAN
Tissue specificity: Detected in heart, brain, lung, liver, skeletal muscle, kidney and pancreas.
genes like me logo Genes that share expressions with DNMBP: view

Orthologs for DNMBP Gene

This gene was present in the common ancestor of animals.

Orthologs for DNMBP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia DNMBP 36
  • 85.37 (n)
  • 85.11 (a)
DNMBP 37
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DNMBP 36
  • 85.11 (n)
  • 83.55 (a)
DNMBP 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dnmbp 36
  • 78.85 (n)
  • 77.08 (a)
Dnmbp 16
Dnmbp 37
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DNMBP 37
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 83 (a)
OneToMany
-- 37
  • 71 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Dnmbp 36
  • 78.64 (n)
  • 76.02 (a)
chicken
(Gallus gallus)
Aves DNMBP 36
  • 67.32 (n)
  • 66.15 (a)
DNMBP 37
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DNMBP 37
  • 60 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.19408 36
tropical clawed frog
(Silurana tropicalis)
Amphibia dnmbp 36
  • 61.06 (n)
  • 59.55 (a)
Str.13042 36
zebrafish
(Danio rerio)
Actinopterygii dnmbp 36
  • 58.43 (n)
  • 55.35 (a)
dnmbp 37
  • 49 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y37A1B.17 37
  • 19 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 39 (a)
OneToMany
Species with no ortholog for DNMBP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DNMBP Gene

ENSEMBL:
Gene Tree for DNMBP (if available)
TreeFam:
Gene Tree for DNMBP (if available)

Paralogs for DNMBP Gene

Paralogs for DNMBP Gene

Selected SIMAP similar genes for DNMBP Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with DNMBP: view

Variants for DNMBP Gene

Sequence variations from dbSNP and Humsavar for DNMBP Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs7652 -- 99,875,704(-) GTCCT(A/T)ACATC utr-variant-3-prime
rs1139943 -- 99,876,559(-) ACTAC(A/C)TTCTG utr-variant-3-prime
rs1962581 -- 99,975,197(+) CTCTA(C/T)TAAAA intron-variant
rs1986519 -- 99,997,268(+) TTAAC(A/G)ATTTT intron-variant
rs1986645 -- 100,007,673(-) GCAGC(C/T)GTGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNMBP Gene

Variant ID Type Subtype PubMed ID
nsv825539 CNV Loss 20364138
nsv825540 CNV Gain 20364138
nsv831960 CNV Gain 17160897
nsv7517 CNV Insertion 18451855
esv2678240 CNV Deletion 23128226
nsv7518 CNV Loss 18451855
nsv507574 CNV Insertion 20534489
nsv516789 CNV Loss 19592680

Relevant External Links for DNMBP Gene

HapMap Linkage Disequilibrium report
DNMBP

Disorders for DNMBP Gene

Relevant External Links for DNMBP

Genetic Association Database (GAD)
DNMBP
Human Genome Epidemiology (HuGE) Navigator
DNMBP
genes like me logo Genes that share disorders with DNMBP: view

No data available for UniProtKB/Swiss-Prot for DNMBP Gene

Publications for DNMBP Gene

  1. Dynamin-binding protein gene on chromosome 10q is associated with late-onset Alzheimer's disease. (PMID: 16740596) Kuwano R. … Ihara Y. (Hum. Mol. Genet. 2006) 3 23 49
  2. No association of dynamin binding protein (DNMBP) gene SNPs and Alzheimer's disease. (PMID: 17442457) Minster R.L. … Kamboh M.I. (Neurobiol. Aging 2008) 3 23 49
  3. DNMBP is genetically associated with Alzheimer dementia in the Belgian population. (PMID: 18359537) Bettens K. … Van Broeckhoven C. (Neurobiol. Aging 2009) 3 23 49
  4. Association analysis of dynamin-binding protein (DNMBP) on chromosome 10q with late onset Alzheimer's disease in a large caucasian UK sample. (PMID: 18452187) Morgan A.R. … Williams J. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2009) 3 23 49
  5. Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10231032) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4

Products for DNMBP Gene

  • Addgene plasmids for DNMBP

Sources for DNMBP Gene

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