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Aliases for DNM3-IT1 Gene

Subcategory (RNA class) for DNM3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNM3-IT1 Gene

  • DNM3 Intronic Transcript 1 2 3 5
  • DNM3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for DNM3-IT1 Gene

Previous GeneCards Identifiers for DNM3-IT1 Gene

  • GC00U933770
  • GC01P171834

Summaries for DNM3-IT1 Gene

GeneCards Summary for DNM3-IT1 Gene

DNM3-IT1 (DNM3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNM3-IT1 Gene

Genomics for DNM3-IT1 Gene

Regulatory Elements for DNM3-IT1 Gene

Enhancers for DNM3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F171908 0.9 ENCODE 6.7 +46.3 46308 3.2 MIER1 TEAD4 JUNB MIER2 REST GLIS1 POU5F1 EHMT2 DNM3 DNM3-IT1 GC01M171926
GH01F171840 0.2 ENCODE 6.5 -22.5 -22511 2.2 ZNF76 KLF17 SIN3A FEZF1 ZNF2 ZEB1 ZNF121 GLIS2 SCRT2 EGR2 DNM3-IT1 DNM3
GH01F171898 0.7 Ensembl ENCODE 6.3 +35.2 35198 1.2 ZNF335 MAZ MAX FOXP2 DNM3-IT1 DNM3 GC01M171926
GH01F171863 1.2 FANTOM5 0.8 -1.1 -1088 0.1 DNM3 DNM3-IT1
GH01F171913 1.3 Ensembl ENCODE 0.2 +49.5 49518 0.6 NFE2 NR3C1 DNM3-IT1 GC01M171926
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DNM3-IT1 Gene

Chromosome:
1
Start:
171,864,187 bp from pter
End:
171,864,687 bp from pter
Size:
501 bases
Orientation:
Plus strand

Genomic View for DNM3-IT1 Gene

Genes around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNM3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNM3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNM3-IT1 Gene

Proteins for DNM3-IT1 Gene

Post-translational modifications for DNM3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNM3-IT1 Gene

Domains & Families for DNM3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNM3-IT1 Gene

Function for DNM3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNM3-IT1 Gene

Localization for DNM3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNM3-IT1 Gene

Pathways & Interactions for DNM3-IT1 Gene

SuperPathways for DNM3-IT1 Gene

No Data Available

Interacting Proteins for DNM3-IT1 Gene

Gene Ontology (GO) - Biological Process for DNM3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNM3-IT1 Gene

Transcripts for DNM3-IT1 Gene

mRNA/cDNA for DNM3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DNM3-IT1 Gene

No ASD Table

Relevant External Links for DNM3-IT1 Gene

GeneLoc Exon Structure for
DNM3-IT1
ECgene alternative splicing isoforms for
DNM3-IT1

Expression for DNM3-IT1 Gene

mRNA expression in normal human tissues for DNM3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for DNM3-IT1 Gene

This gene is overexpressed in Testis (x26.8).
genes like me logo Genes that share expression patterns with DNM3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DNM3-IT1 Gene

Orthologs for DNM3-IT1 Gene

Evolution for DNM3-IT1 Gene

ENSEMBL:
Gene Tree for DNM3-IT1 (if available)
TreeFam:
Gene Tree for DNM3-IT1 (if available)

No data available for Orthologs for DNM3-IT1 Gene

Paralogs for DNM3-IT1 Gene

No data available for Paralogs for DNM3-IT1 Gene

Variants for DNM3-IT1 Gene

Sequence variations from dbSNP and Humsavar for DNM3-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10753202 -- 171,864,694(+) TGTGG(A/G)ATTGT intron-variant, downstream-variant-500B
rs10753203 -- 171,864,951(+) AATCA(C/T)TCATT intron-variant, downstream-variant-500B
rs112047408 -- 171,864,877(+) TAATT(G/T)TATAG intron-variant, downstream-variant-500B
rs114979811 -- 171,863,915(+) AGCCT(C/T)ATTGA intron-variant, upstream-variant-2KB
rs115227979 -- 171,862,908(+) AAAGA(G/T)TAGTT intron-variant, upstream-variant-2KB

Relevant External Links for DNM3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNM3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DNM3-IT1 Gene

Disorders for DNM3-IT1 Gene

Relevant External Links for DNM3-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNM3-IT1

No disorders were found for DNM3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNM3-IT1 Gene

Publications for DNM3-IT1 Gene

No publications were found for DNM3-IT1 Gene.

Products for DNM3-IT1 Gene

Sources for DNM3-IT1 Gene

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