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DNLZ Gene

protein-coding   GIFtS: 35
GCID: GC09M139253

DNL-Type Zinc Finger

(Previous name: chromosome 9 open reading frame 151)
(Previous symbol: C9orf151)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
DNL-Type Zinc Finger1 2     HEP2
C9orf1511 2 3     RP11-413M3.22
HSP70 Escort Protein1 2     TIMM152
Hsp70-Escort Protein 12 3     ZIM172
HEP12 3     bA413M3.22
MtHsp70-Escort Protein2 3     DNL-Type Zinc Finger Protein2
Chromosome 9 Open Reading Frame 1511     Translocase Of Inner Mitochondrial Membrane 15 Homolog2
Translocase Of Inner Mitochondrial Membrane 15 Homolog (Yeast)1     

External Ids:    HGNC: 338791   Entrez Gene: 7284892   Ensembl: ENSG000002132217   UniProtKB: Q5SXM83   

Export aliases for DNLZ gene to outside databases

Previous GC identifers: GC09M138380 GC09M108715


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for DNLZ Gene:
DNLZ (DNL-type zinc finger) is a protein-coding gene.

UniProtKB/Swiss-Prot: DNLZ_HUMAN, Q5SXM8
Function: May function as a co-chaperone towards HSPA9/mortalin which, by itself, is prone to self-aggregation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000009.11  NC_018920.2  NT_008470.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the DNLZ gene promoter:
         NF-1   SREBP-1c   Pax-6   NF-kappaB   SREBP-1b   c-Ets-1   PPAR-gamma1   SREBP-1a   PPAR-gamma2   NF-kappaB1   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DNLZ


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q34.3   Ensembl cytogenetic band:  9q34.3   HGNC cytogenetic band: 9q34.3

DNLZ Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DNLZ gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M139253:  view genomic region     (about GC identifiers)

Start:
139,253,932 bp from pter      End:
139,258,241 bp from pter
Size:
4,310 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: DNLZ_HUMAN, Q5SXM8 (See protein sequence)
Recommended Name: DNL-type zinc finger protein precursor  
Size: 178 amino acids; 19204 Da
Subunit: Oligomerizes in a concentration-dependent fashion. Interacts with HSPA9
Secondary accessions: B2RUX5 B9EJE1

Explore the universe of human proteins at neXtProt for DNLZ: NX_Q5SXM8

Explore proteomics data for DNLZ at MOPED


See DNLZ Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001074318.1  
ENSEMBL proteins: 
 ENSP00000360804   ENSP00000360803  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
DNLZ: Zinc fingers

2 InterPro protein domains:
 IPR024158 Mt_import_TIM15
 IPR007853 Znf_DNL-typ

Graphical View of Domain Structure for InterPro Entry Q5SXM8

ProtoNet protein and cluster: Q5SXM8

UniProtKB/Swiss-Prot: DNLZ_HUMAN, Q5SXM8
Similarity: Contains 1 DNL-type zinc finger


Find genes that share domains with DNLZ           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: DNLZ_HUMAN, Q5SXM8
Function: May function as a co-chaperone towards HSPA9/mortalin which, by itself, is prone to self-aggregation

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008270zinc ion binding IEA--
     
Find genes that share ontologies with DNLZ           About GenesLikeMe


Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for DNLZ

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hsa-mir-197-3p (MIRT048063)

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
DNLZ_HUMAN, Q5SXM8: Mitochondrion
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
mitochondrion5
cytosol2
nucleus1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005739mitochondrion IEA--

Find genes that share ontologies with DNLZ           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for DNLZ
Interactions:

    Search GeneGlobe Interaction Network for DNLZ

STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

Selected Interacting proteins for DNLZ (ENSP000003608034) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
InteractantInteraction Details
GeneCardExternal ID(s)
HSPA9ENSP000002971854STRING: ENSP00000297185
CHTF18ENSP000002623154STRING: ENSP00000262315
MUS81ENSP000003078534STRING: ENSP00000307853
RAD17ENSP000003701514STRING: ENSP00000370151
ERCC4ENSP000003105204STRING: ENSP00000310520
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for DNLZ



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for DNLZ gene: 
NM_001080849.2  

Unigene Cluster for DNLZ:

DNL-type zinc finger
Hs.528581  [show with all ESTs]
Unigene Representative Sequence: BM805607
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000371739 ENST00000371738(uc004chf.1)
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Additional mRNA sequence: 

BC146915.1 BC146924.1 BC171835.1 NR_073565.1 

3 DOTS entries:

DT.104625  DT.99967841  DT.95224468 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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DNLZ expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
DNLZ Expression
About this image

DNLZ Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

DNLZ Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.528581
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals and fungi.

Orthologs for DNLZ gene from Selected species (see all 14)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Dnlz1 , 5 DNL-type zinc finger1, 5 80.28(n)1
75.74(a)1
  2 (18.87 cM)5
528381  NM_026828.31  NP_081104.11 
 263481215 
chicken
(Gallus gallus)
Aves DNLZ1 DNL-type zinc finger 69.94(n)
65.18(a)
  772152  XM_001235327.3  XP_001235328.1 
lizard
(Anolis carolinensis)
Reptilia DNLZ6
DNL-type zinc finger
69(a)
1 ↔ 1
AAWZ02038786(1938-7696)
tropical clawed frog
(Xenopus tropicalis)
Amphibia dnlz1 DNL-type zinc finger 57.68(n)
53.29(a)
  779561  XM_002935220.2  XP_002935266.1 
zebrafish
(Danio rerio)
Actinopterygii dnlz6
DNL-type zinc finger
41(a)
1 ↔ 1
21(4503880-4508705) ENSDARG00000068655
fruit fly
(Drosophila melanogaster)
Insecta CG123796
CG82066
--
36(a)
21(a)
many → 1
many → 1
X(15627255-15628029)
X(15633275-15634275)
worm
(Caenorhabditis elegans)
Secernentea F53A3.76
Protein F53A3.7
46(a)
1 ↔ 1
III(1951479-1952032) WBGene00018723
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ZIM17(YNL310C)4 Heat shock protein with a zinc finger motif; essential more   --   14(52431-51907) 855406  NP_014089.2 


ENSEMBL Gene Tree for DNLZ (if available)
TreeFam Gene Tree for DNLZ (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for DNLZ (see all 94)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs736702351,2
C,F--139255931(+) AACACC/ACGGCC 2 -- ds50011Minor allele frequency- A:0.50WA 2
rs1835033471,2
--139255933(+) CACACA/GGCCAC 2 -- ds50010--------
rs615358771,2
C,F--139256130(+) GCTCAA/GAGTCA 2 -- ds50012Minor allele frequency- G:0.08WA 120
rs107470471,2
C,F,A,H--139256141(+) CGCAGC/TGACAG 2 -- ds500113Minor allele frequency- T:0.09NS EA NA WA 826
rs1485665301,2
--139256261(+) CCTGCA/GGCTCC 2 -- ds50010--------
rs1454440331,2
--139256328(+) GAAAGA/GCCACG 2 -- ds50010--------
rs1868620461,2
--139256450(+) GTGCCA/GGGGAG 2 -- ut31 nc-transcript-variant0--------
rs1901215451,2
C--139256456(+) GGGAGC/TGCAGG 2 -- ut31 nc-transcript-variant0--------
rs38125521,2,,4
C,F,H--139256468(+) GTCAGC/GTCGGC 3 T S mis111Minor allele frequency- G:0.09EA NS NA 4454
rs1504291211,2
C--139256477(+) GCTCCG/ATCTTG 3 /T /M mis11Minor allele frequency- A:0.00NA 2402

HapMap Linkage Disequilibrium report for DNLZ (139253932 - 139258241 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for DNLZ (see all 20):    About this table    
Variant IDTypeSubtypePubMed ID
nsv509333CNV Insertion20534489
dgv8393n71CNV Loss21882294
nsv894294CNV Loss21882294
nsv894361CNV Loss21882294
dgv8390n71CNV Loss21882294
nsv894359CNV Loss21882294
dgv8389n71CNV Loss21882294
dgv8386n71CNV Loss21882294
nsv469918CNV Loss18288195
nsv482928CNV Loss15286789

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for DNLZ gene integrated from 10 sources:
(articles sorted by number of sources associating them with DNLZ)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Structural and stability studies of the human mtHsp70-escort protein 1: An essential mortalin co-chaperone. (PubMed id 23462535)1, 2 Dores-Silva P.R.... Borges J.C. (Int. J. Biol. Macromol. 2013)
  2. The DNLZ/HEP zinc-binding subdomain is critical for regulation of the mitochondrial chaperone HSPA9. (PubMed id 22162012)1, 3 Vu M.T....Silberg J.J. (Protein Sci. 2012)
  3. A conserved histidine in human DNLZ/HEP is required for stimulation of HSPA9 ATPase activity. (PubMed id 21530495)1, 3 Zhai P....Silberg J.J. (Biochem. Biophys. Res. Commun. 2011)
  4. The human escort protein Hep binds to the ATPase domain of mitochondrial hsp70 and regulates ATP hydrolysis. (PubMed id 18632665)1 Zhai P....Silberg J.J. (J. Biol. Chem. 2008)
  5. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (Nature 2004)
  6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 728489 HGNC: 33879 Ensembl:ENSG00000213221 euGenes: HUgn728489 ECgene: DNLZ
H-InvDB: DNLZ

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for DNLZ Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for DNLZ gene:
Search GeneIP for patents involving DNLZ

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Biologicals
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 Search for Antibodies for DNLZ at Abcam
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  Search antibodies-online for antibodies for DNLZ
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 antibodies-online proteins for DNLZ (2 products)
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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