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Aliases for DNER Gene

Aliases for DNER Gene

  • Delta/Notch-Like EGF Repeat Containing 2 3
  • Bet 3 4
  • Delta And Notch-Like Epidermal Growth Factor-Related Receptor 3
  • Delta-Notch-Like EGF Repeat-Containing Transmembrane 3
  • WUGSC:H_NH0150O02.1 3
  • H_NH0150O02.1 3
  • UNQ26 3

External Ids for DNER Gene

Previous GeneCards Identifiers for DNER Gene

  • GC02M228282
  • GC02M228954
  • GC02M230186
  • GC02M230424
  • GC02M230047
  • GC02M229930
  • GC02M222063

Summaries for DNER Gene

GeneCards Summary for DNER Gene

DNER (Delta/Notch-Like EGF Repeat Containing) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Disease. GO annotations related to this gene include calcium ion binding and clathrin binding. An important paralog of this gene is NOTCH2.

UniProtKB/Swiss-Prot for DNER Gene

  • Activator of the NOTCH1 pathway. May mediate neuron-glia interaction during astrocytogenesis (By similarity).

Gene Wiki entry for DNER Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNER Gene

Genomics for DNER Gene

Regulatory Elements for DNER Gene

Genomic Location for DNER Gene

Start:
229,357,629 bp from pter
End:
229,714,570 bp from pter
Size:
356,942 bases
Orientation:
Minus strand

Genomic View for DNER Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DNER Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNER Gene

Proteins for DNER Gene

  • Protein details for DNER Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NFT8-DNER_HUMAN
    Recommended name:
    Delta and Notch-like epidermal growth factor-related receptor
    Protein Accession:
    Q8NFT8
    Secondary Accessions:
    • A6NP39
    • Q53R88
    • Q53TP7
    • Q53TQ5
    • Q8IYT0
    • Q8TB42
    • Q9NTF1
    • Q9UDM2

    Protein attributes for DNER Gene

    Size:
    737 amino acids
    Molecular mass:
    78475 Da
    Quaternary structure:
    • Interacts with AP1G1. Interacts with NOTCH1 (By similarity).

neXtProt entry for DNER Gene

Proteomics data for DNER Gene at MOPED

Post-translational modifications for DNER Gene

  • Glycosylation at Ser169, Thr172, Thr174, Thr177, Asn223, and Asn564
  • Modification sites at PhosphoSitePlus

Other Protein References for DNER Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for DNER Gene

Domains for DNER Gene

Suggested Antigen Peptide Sequences for DNER Gene

Graphical View of Domain Structure for InterPro Entry

Q8NFT8

UniProtKB/Swiss-Prot:

DNER_HUMAN :
  • Q8NFT8
Domain:
  • Contains 10 EGF-like domains.
  • Contains 1 follistatin-like domain.
genes like me logo Genes that share domains with DNER: view

No data available for Gene Families for DNER Gene

Function for DNER Gene

Molecular function for DNER Gene

UniProtKB/Swiss-Prot Function: Activator of the NOTCH1 pathway. May mediate neuron-glia interaction during astrocytogenesis (By similarity).

Gene Ontology (GO) - Molecular Function for DNER Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity TAS 11950833
GO:0005112 Notch binding IEA --
GO:0005509 calcium ion binding NAS 11950833
GO:0005515 protein binding IPI 11950833
GO:0030276 clathrin binding TAS 11950833
genes like me logo Genes that share ontologies with DNER: view

Phenotypes for DNER Gene

genes like me logo Genes that share phenotypes with DNER: view

Animal Models for DNER Gene

MGI Knock Outs for DNER:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for DNER Gene

Localization for DNER Gene

Subcellular locations from UniProtKB/Swiss-Prot for DNER Gene

Cell membrane; Single-pass type I membrane protein. Note=Present on the membrane of dendrites and cell bodies but excluded from axonal membrane. Also found in early endosomes in the somatodendritic region (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DNER Gene COMPARTMENTS Subcellular localization image for DNER gene
Compartment Confidence
endosome 5
plasma membrane 5
extracellular 2
endoplasmic reticulum 1
golgi apparatus 1
lysosome 1

Gene Ontology (GO) - Cellular Components for DNER Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005769 early endosome IDA 11950833
GO:0005886 plasma membrane IDA 11950833
GO:0016021 integral component of membrane IEA --
GO:0030425 dendrite IDA 11950833
GO:0043025 neuronal cell body IEA --
genes like me logo Genes that share ontologies with DNER: view

Pathways for DNER Gene

genes like me logo Genes that share pathways with DNER: view

Gene Ontology (GO) - Biological Process for DNER Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001764 neuron migration NAS 11950833
GO:0006897 endocytosis NAS 11950833
GO:0007219 Notch signaling pathway TAS --
GO:0007220 Notch receptor processing IEA --
GO:0007416 synapse assembly NAS 11950833
genes like me logo Genes that share ontologies with DNER: view

Transcripts for DNER Gene

mRNA/cDNA for DNER Gene

Unigene Clusters for DNER Gene

Delta/notch-like EGF repeat containing:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNER Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15
SP1: -
SP2:
SP3: - -
SP4: -
SP5:
SP6:

Relevant External Links for DNER Gene

GeneLoc Exon Structure for
DNER
ECgene alternative splicing isoforms for
DNER

Expression for DNER Gene

mRNA expression in normal human tissues for DNER Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DNER Gene

This gene is overexpressed in Brain - Hypothalamus (6.2), Brain - Substantia nigra (5.6), and Brain - Spinal cord (cervical c-1) (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DNER Gene

SOURCE GeneReport for Unigene cluster for DNER Gene Hs.234074

mRNA Expression by UniProt/SwissProt for DNER Gene

Q8NFT8-DNER_HUMAN
Tissue specificity: Expressed in brain, spinal cord and adrenal gland.
genes like me logo Genes that share expressions with DNER: view

Orthologs for DNER Gene

This gene was present in the common ancestor of animals.

Orthologs for DNER Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNER 35
  • 99.37 (n)
  • 99.73 (a)
DNER 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DNER 35
  • 87.81 (n)
  • 90.28 (a)
DNER 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DNER 35
  • 89.25 (n)
  • 93.52 (a)
DNER 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dner 35
  • 87.43 (n)
  • 90.5 (a)
Dner 16
Dner 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DNER 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Dner 35
  • 87.2 (n)
  • 91.32 (a)
chicken
(Gallus gallus)
Aves DNER 35
  • 75.18 (n)
  • 77.04 (a)
DNER 36
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DNER 36
  • 73 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.17677 35
tropical clawed frog
(Silurana tropicalis)
Amphibia dner 35
  • 69.34 (n)
  • 72.84 (a)
Str.12208 35
zebrafish
(Danio rerio)
Actinopterygii dner 35
  • 62.67 (n)
  • 59.04 (a)
dner 36
  • 57 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta wry 36
  • 17 (a)
OneToMany
Species with no ortholog for DNER:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DNER Gene

ENSEMBL:
Gene Tree for DNER (if available)
TreeFam:
Gene Tree for DNER (if available)

Paralogs for DNER Gene

genes like me logo Genes that share paralogs with DNER: view

Variants for DNER Gene

Sequence variations from dbSNP and Humsavar for DNER Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs2099 -- 229,711,554(+) AAGCC(A/T)AAAGA intron-variant
rs2100 -- 229,711,492(+) CATTG(A/T)CTTAC intron-variant
rs189990 -- 229,704,410(+) acact(G/T)acaga intron-variant
rs207651 -- 229,376,043(+) AGGTG(A/C)CTTGC intron-variant
rs207652 -- 229,376,778(+) AAATG(C/T)CTAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNER Gene

Variant ID Type Subtype PubMed ID
nsv834564 CNV Gain 17160897
nsv3198 CNV Insertion 18451855
esv273242 CNV Insertion 20981092
esv268917 CNV Insertion 20981092
nsv875939 CNV Gain 21882294
esv2669440 CNV Deletion 23128226
nsv520821 CNV Loss 19592680
nsv875940 CNV Loss 21882294
esv25345 CNV Loss 19812545
esv269313 CNV Insertion 20981092
nsv522560 CNV Loss 19592680
esv2290408 CNV Deletion 18987734
esv2652970 CNV Deletion 19546169
esv2721589 CNV Deletion 23290073
esv2664843 CNV Deletion 23128226
esv2751841 CNV Gain 17911159

Relevant External Links for DNER Gene

HapMap Linkage Disequilibrium report
DNER

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNER Gene

Disorders for DNER Gene

Relevant External Links for DNER

Genetic Association Database (GAD)
DNER
Human Genome Epidemiology (HuGE) Navigator
DNER
genes like me logo Genes that share disorders with DNER: view

No data available for UniProtKB/Swiss-Prot for DNER Gene

Publications for DNER Gene

  1. Delta/notch-like epidermal growth factor (EGF)-related receptor, a novel EGF-like repeat-containing protein targeted to dendrites of developing and adult central nervous system neurons. (PMID: 11950833) Eiraku M. … Kengaku M. (J. Biol. Chem. 2002) 2 3 4
  2. BET, a novel neuronal transmembrane protein with multiple EGF-like motifs. (PMID: 11997712) Nishizumi H. … Sakano H. (NeuroReport 2002) 2 3 4
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4

Products for DNER Gene

Sources for DNER Gene

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