DNER Gene
protein-coding GIFtS : 52
GCID: GC02 M230186
delta/notch-like EGF repeat containing
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Aliasesfor DNER gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Delta/Notch-Like EGF Repeat Containing 1 2 WUGSC:H_NH0150O02.12 UNQ261 2 Delta And Notch-Like Epidermal Growth Factor-Related Receptor2 Bet1 Delta-Notch-Like EGF Repeat-Containing Transmembrane2 H_NH0150O02.12 BET3
Export aliases for DNER gene to outside databases Previous GC identifers: GC02M228282 GC02M228954 GC02M230424 GC02M230047 GC02M229930 GC02M222063
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Summariesfor DNER gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: DNER_HUMAN, Q8NFT8 Function : Activator of the NOTCH1 pathway. May mediate neuron-glia interaction during astrocytogenesis (By similarity)Gene Wiki entry for DNER
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Genomic Viewsfor DNER gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005403.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DNER gene promoter: AP-1 NRSF form 1 ATF-2 MyoD AP-4 NRSF form 2 c-Jun ATF Other transcription factors Search SABiosciences Chromatin IP Primers for DNER Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DNER
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q36.3 Ensembl cytogenetic band: 2q36.3 HGNC cytogenetic band: 2q36.3 DNER Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M230186: view genomic region
(about GC identifiers )
Start:
230,222,345 bp from pter
End:
230,579,286 bp from pter
Size:
356,942 bases
Orientation:
minus strand
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Proteinsfor DNER gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DNER_HUMAN, Q8NFT8 (See
protein sequence )Recommended Name: Delta and Notch-like epidermal growth factor-related receptor precursor Size : 737 amino acids; 78475 Da
Subunit : Interacts with AP1G1. Interacts with NOTCH1 (By similarity)
Subcellular location : Cell membrane; Single-pass type I membrane protein. Note=Present on the membrane of dendrites andcell bodies but excluded from axonal membrane. Also found in early endosomes in the somatodendritic region (By similarity)
Secondary accessions : A6NP39 Q53R88 Q53TP7 Q53TQ5 Q8IYT0 Q8TB42 Q9NTF1 Q9UDM2Explore the universe of human proteins at neXtProt for DNER: NX_Q8NFT8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8NFT8 DNER Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_620711.3 ENSEMBL proteins: ENSP00000345229 Reactome Protein details: Q8NFT8 Human Recombinant Protein Products: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
DNER for ontologies About GeneDecksing DNER Antibody Products: Assay Products for DNER:
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Protein
Domains / Familiesfor DNER gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DNER for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q8NFT8 ProtoNet protein and cluster: Q8NFT8
2 Blocks protein families : IPB000152 Aspartic acid and asparagine hydroxylation site IPB001881 EGF-like calcium-binding UniProtKB/Swiss-Prot: DNER_HUMAN, Q8NFT8 Similarity : Contains 10 EGF-like domainsSimilarity : Contains 1 follistatin-like domain
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Functionfor DNER gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DNER_HUMAN, Q8NFT8 Function : Activator of the NOTCH1 pathway. May mediate neuron-glia interaction during astrocytogenesis (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNER (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNEROriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DNER (NM_139072 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DNER Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNER
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNER
Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view) : About this table
DNER for ontologies About GeneDecksing Animal Models: Mouse knock-out Dner tm1Hta for DNER 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Dner) :
DNER for phenotypes About GeneDecksing
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Pathways & Interactionsfor DNER gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/6 super-pathways (see all 6 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Signaling by NOTCH1 t(7 9)(NOTCH1:M1580_K2555) Translocation Mutant 2 Cleavage of DNER:NOTCH1 complex releases NICD1 3 Disease 4 Notch signaling pathway 5 NOTCH2 Activation and Transmission of Signal to the Nucleus
Pathway sources See GeneCards unified pathways Show all pathways 1 BioSystems Pathway for DNER 5/12
Reactome Pathways for DNER (see all 12 )
DNER for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DNER STRING Interaction
Network Preview (showing 5 interactants - click image to see 8)5/9 Interacting proteins for DNER (Q8NFT8 3 ENSP00000345229 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
DNER for ontologies About GeneDecksing
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Drugs & Compoundsfor DNER gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for DNER Search CenterWatch for drugs/clinical trials and news about DNER
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Transcriptsfor DNER gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for DNER gene: NM_139072.3 Unigene Cluster for DNER:
Delta/notch-like EGF repeat containing Hs.234074 [show with all ESTs ] Unigene Representative Sequence: BC035009 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000341772 (uc010zly.1 uc002vpv.3 ) ENST00000482831 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNER (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNEROriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: DNER (NM_139072 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DNER Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNER
Additional cDNA sequence: AF442487.1 AK289553.1 AK304596.1 AK304631.1 AK308576.1 AL137311.1 AY358891.1 BC024766.2 BC035009.1
6 DOTS entries : DT.113110 DT.100782293
DT.100782295 DT.91996524 DT.95091427 DT.95091432 24/133 AceView cDNA sequences (see all 133 ):
AI636555 CD105614 AI394531 AI203048 AI631197 AV729301 BM723384 AI468746 AA321164 AA321911 AW006208 CD108656 AI912956 AW952293 AI479888 AI476160 BQ774774 AI968200 AW007504 AL137311 BU742167 CD251620 BQ637164 AW051673 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for DNER (see all 6 ) About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 SP1 :                               -         SP2 :                                       SP3 :                         -       -         SP4 :         -                               SP5 :                                      
ECgene alternative splicing isoforms for DNER
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Expression for DNER gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section DNER expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGTAAGTAAC
About this image DNER expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See DNER Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for DNER SOURCE GeneReport for Unigene cluster: Hs.234074 UniProtKB/Swiss-Prot: DNER_HUMAN, Q8NFT8 Tissue specificity : Expressed in brain, spinal cord and adrenal gland SABiosciences Custom PCR Arrays for DNER Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DNERBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat DNER QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DNER QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DNER In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNER
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Orthologsfor DNER gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for DNER gene from 5/20 species (see all 20 ) About this table
ENSEMBL Gene Tree for DNER (if available)TreeFam Gene Tree for DNER (if available)
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Paralogsfor DNER gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for DNER gene NOTCH4 2 SNED1 2 NOTCH1 2 NOTCH3 2 DLL3 2 DLL4 2 JAG2 2 CRB2 2 NOTCH2 2 JAG1 2 CRB1 2 DLL1 2
DNER for paralogs About GeneDecksing
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Genomic Variantsfor DNER gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for DNER (230222345 - 230472345 bp, first 250kb of DNER)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 9 variations for DNER 9 CNVs : 8396 68240 4329 79007 90327 90328 50410 98163 79006
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DNER
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Disorders
/ Diseasesfor DNER gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
DNER for disorders About GeneDecksing
OMIM gene information: 607299
OMIM disorders : --4 diseases for DNER : About MalaCards pathological gambling hepatitis b hepatitis neuronitis Human Genome Epidemiology (HuGE) Navigator: DNER (1 document)Export disorders for DNER gene to outside databases
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Publicationsfor DNER gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for DNER gene, integrated from 9 sources (see all 14 ): (articles sorted by number of sources associating them with DNER) Utopia : connect your pdf to the dynamic world of online information
Delta/notch-like epidermal growth factor (EGF)-related receptor, a novel EGF-like repeat-containing protein targeted to dendrites of developing and adult central nervous system neurons. (PubMed id 11950833) 1 , 2 , 3 Eiraku M.... Kengaku M. (2002) BET, a novel neuronal transmembrane protein with multiple EGF-like motifs. (PubMed id 11997712) 1 , 2 , 3 Nishizumi H.... Sakano H. (2002) Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002) 1 , 2 Ramachandran P....Loo J.A. (2006) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 1 , 2 Hillier L.W....Wilson R.K. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496) 1 Davila S....Seielstad M. (2010) Polarized targeting of DNER into dendritic plasma mem brane in hippocampal neurons depends on endocytosis. (PubMed id 20367751) 1 Kurisu J....Kengaku M. (2010) DNER modulates adipogenesis of human adipose tissue-d erived mesenchymal stem cells via regulation of cell proliferation. (PubMed id 20070733) 1 Park J.R....Kang K.S. (2010) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008)
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External Searches for DNER gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DNER gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DNER gene
(According to HUGE )
About This Section --
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Specialized Databases showing DNER gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for DNER Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for DNER gene: Search GeneIP for patents involving DNER GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DNER gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for DNER OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for DNER OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for DNER OriGene Protein Over-expression Lysate for DNER Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for DNER OriGene 3'-UTR Clone for DNER OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for DNER OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for DNER Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for DNER OriGene Custom Protein Services for DNER OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DNER QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing DNER QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat DNER QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat DNER QIAGEN QuantiFast Probe-based Assays in human , mouse , rat DNER QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DNER
Search Tocris compounds for DNER
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DNER
Search ThermoFisher Antibodies for DNER
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat DNER
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