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Aliases for DNALI1 Gene

Aliases for DNALI1 Gene

  • Dynein Axonemal Light Intermediate Chain 1 2 3 5
  • Dynein, Axonemal, Light Intermediate Polypeptide 1 2 3
  • DJ423B22.5 (Axonemal Dynein Light Chain (Hp28)) 2 3
  • Inner Dynein Arm, Homolog Of Clamydomonas 2 3
  • Inner Dynein Arm Light Chain, Axonemal 3 4
  • Hp28 3 4
  • Axonemal Dynein Light Intermediate Polypeptide 1 3
  • DJ423B22.5 3
  • P28 3

External Ids for DNALI1 Gene

Previous GeneCards Identifiers for DNALI1 Gene

  • GC01P037857
  • GC01P037077
  • GC01P037449
  • GC01P037451
  • GC01P037452
  • GC01P037691
  • GC01P038023
  • GC01P036139

Summaries for DNALI1 Gene

Entrez Gene Summary for DNALI1 Gene

  • This gene is the human homolog of the Chlamydomonas inner dynein arm gene, p28. The precise function of this gene is not known, however, it is a potential candidate for immotile cilia syndrome (ICS). Ultrastructural defects of the inner dynein arms are seen in patients with ICS. Immotile mutant strains of Chlamydomonas, a biflagellated algae, exhibit similar defects. [provided by RefSeq, Jul 2008]

GeneCards Summary for DNALI1 Gene

DNALI1 (Dynein Axonemal Light Intermediate Chain 1) is a Protein Coding gene. Diseases associated with DNALI1 include Primary Ciliary Dyskinesia. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.. GO annotations related to this gene include microtubule motor activity and dynein heavy chain binding.

UniProtKB/Swiss-Prot for DNALI1 Gene

  • May play a dynamic role in flagellar motility.

Additional gene information for DNALI1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNALI1 Gene

Genomics for DNALI1 Gene

Regulatory Elements for DNALI1 Gene

Enhancers for DNALI1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H037470 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14.3 -77.6 -77556 18 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZC3H12A LINC01137 MTF1 SNIP1 GNL2 DNALI1 SF3A3 FTH1P1 MEAF6 YRDC
GH01H037513 1.1 ENCODE 22 -42.3 -42288 2 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 SF3A3 GNL2 DNALI1 FTH1P1 MEAF6 SNIP1 RPS27P9 YRDC C1orf109 LINC01137
GH01H037507 0.8 ENCODE dbSUPER 25.1 -48.8 -48800 0 EED IKZF1 JUNB BATF IKZF2 DNALI1 LINC01137 ZC3H12A RPS27P9 SNIP1 GNL2 MEAF6 MIR5581
GH01H037498 1.1 Ensembl ENCODE dbSUPER 14.6 -57.6 -57551 1 ZNF121 NFIC JUND ZBTB48 ZNF600 NR3C1 RFX5 GNL2 DNALI1 MEAF6 C1orf109 CDCA8 EPHA10 LINC01137 MIR5581 PIR46555
GH01H037594 1.1 ENCODE 14.3 +38.6 38647 2 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 DNALI1 C1orf109 CDCA8 MEAF6 LINC01137 GNL2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNALI1 on UCSC Golden Path with GeneCards custom track

Promoters for DNALI1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004862 -19 201 TBP HDGF MXI1 SAP130 ARID4B MAX BMI1 ZNF644 KMT2B RAD21

Genomic Location for DNALI1 Gene

Chromosome:
1
Start:
37,556,919 bp from pter
End:
37,566,857 bp from pter
Size:
9,939 bases
Orientation:
Plus strand

Genomic View for DNALI1 Gene

Genes around DNALI1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNALI1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNALI1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNALI1 Gene

Proteins for DNALI1 Gene

  • Protein details for DNALI1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14645-IDLC_HUMAN
    Recommended name:
    Axonemal dynein light intermediate polypeptide 1
    Protein Accession:
    O14645
    Secondary Accessions:
    • A8K387
    • B4DHN6
    • Q05BL9
    • Q5HYE2
    • Q5TGH0
    • Q7L0I5

    Protein attributes for DNALI1 Gene

    Size:
    258 amino acids
    Molecular mass:
    29662 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAB69193.1; Type=Frameshift; Positions=7, 28, 94, 125, 139, 153; Evidence={ECO:0000305}; Sequence=CAI20553.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAI46082.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for DNALI1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DNALI1 Gene

Post-translational modifications for DNALI1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DNALI1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for DNALI1

No data available for DME Specific Peptides for DNALI1 Gene

Domains & Families for DNALI1 Gene

Gene Families for DNALI1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for DNALI1 Gene

Suggested Antigen Peptide Sequences for DNALI1 Gene

Graphical View of Domain Structure for InterPro Entry

O14645

UniProtKB/Swiss-Prot:

IDLC_HUMAN :
  • Belongs to the inner dynein arm light chain family.
Family:
  • Belongs to the inner dynein arm light chain family.
genes like me logo Genes that share domains with DNALI1: view

Function for DNALI1 Gene

Molecular function for DNALI1 Gene

UniProtKB/Swiss-Prot Function:
May play a dynamic role in flagellar motility.

Phenotypes From GWAS Catalog for DNALI1 Gene

Gene Ontology (GO) - Molecular Function for DNALI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity IEA --
GO:0005515 protein binding IPI 15383276
GO:0045504 dynein heavy chain binding IEA,IBA --
genes like me logo Genes that share ontologies with DNALI1: view
genes like me logo Genes that share phenotypes with DNALI1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DNALI1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DNALI1 Gene

Localization for DNALI1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNALI1 gene
Compartment Confidence
cytoskeleton 5
extracellular 2
cytosol 2
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for DNALI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA,IDA 19944400
GO:0005930 axoneme IDA 23849778
GO:0030175 filopodium IEA,IBA --
GO:0030286 dynein complex IEA --
genes like me logo Genes that share ontologies with DNALI1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for DNALI1 Gene

Pathways & Interactions for DNALI1 Gene

genes like me logo Genes that share pathways with DNALI1: view

Pathways by source for DNALI1 Gene

1 KEGG pathway for DNALI1 Gene

Gene Ontology (GO) - Biological Process for DNALI1 Gene

None

No data available for SIGNOR curated interactions for DNALI1 Gene

Drugs & Compounds for DNALI1 Gene

No Compound Related Data Available

Transcripts for DNALI1 Gene

Unigene Clusters for DNALI1 Gene

Dynein, axonemal, light intermediate chain 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DNALI1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for DNALI1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c
SP1: - - -
SP2: - - - - -
SP3: - - - -
SP4: -
SP5:
SP6:

Relevant External Links for DNALI1 Gene

GeneLoc Exon Structure for
DNALI1
ECgene alternative splicing isoforms for
DNALI1

Expression for DNALI1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNALI1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DNALI1 Gene

This gene is overexpressed in Testis (x8.9).

Protein differential expression in normal tissues from HIPED for DNALI1 Gene

This gene is overexpressed in Breast (37.7), Testis (23.7), and Ovary (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for DNALI1 Gene



Protein tissue co-expression partners for DNALI1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DNALI1 Gene:

DNALI1

SOURCE GeneReport for Unigene cluster for DNALI1 Gene:

Hs.406050

mRNA Expression by UniProt/SwissProt for DNALI1 Gene:

O14645-IDLC_HUMAN
Tissue specificity: Expressed in many tissues. A smaller 0.9 kb and a larger 2.5 kb transcripts were detected at the highest level in the testis, at medium levels in the prostate, heart, liver, lung and pancreas, at low levels in the ovary, skeletal muscle and small intestine. Not detected in spleen, colon epithelium, thymus or peripheral blood leukocytes. The 0.9 kb transcript is expressed at a 20-fold higher level than the 2.5 kb transcript in the testis.

Evidence on tissue expression from TISSUES for DNALI1 Gene

  • Lung(4.5)
  • Nervous system(4.5)
  • Spleen(4)
  • Pancreas(2.3)
genes like me logo Genes that share expression patterns with DNALI1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for DNALI1 Gene

Orthologs for DNALI1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DNALI1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNALI1 33 34
  • 99.64 (n)
cow
(Bos Taurus)
Mammalia DNALI1 33 34
  • 91.73 (n)
dog
(Canis familiaris)
Mammalia DNALI1 33 34
  • 90.36 (n)
mouse
(Mus musculus)
Mammalia Dnali1 33 16 34
  • 89.66 (n)
rat
(Rattus norvegicus)
Mammalia Dnali1 33
  • 89.66 (n)
oppossum
(Monodelphis domestica)
Mammalia DNALI1 34
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DNALI1 34
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves DNALI1 33 34
  • 73.46 (n)
lizard
(Anolis carolinensis)
Reptilia DNALI1 34
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dnali1 33
  • 72.97 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16772 33
zebrafish
(Danio rerio)
Actinopterygii dnali1 33 34 34
  • 72.18 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004030 33
  • 61.27 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG6971 35 33 34
  • 58.37 (n)
worm
(Caenorhabditis elegans)
Secernentea dyla-1 34
  • 31 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7082 34
  • 80 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5036 33
Species where no ortholog for DNALI1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DNALI1 Gene

ENSEMBL:
Gene Tree for DNALI1 (if available)
TreeFam:
Gene Tree for DNALI1 (if available)

Paralogs for DNALI1 Gene

No data available for Paralogs for DNALI1 Gene

Variants for DNALI1 Gene

Sequence variations from dbSNP and Humsavar for DNALI1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
VAR_035701 A colorectal cancer sample
rs1000182103 -- 37,560,431(+) CAAGC(A/G)TGCTG intron-variant
rs1000212313 -- 37,562,552(+) TGGAA(A/G)CTGGT intron-variant
rs1000276192 -- 37,560,329(+) CCTTG(A/G)ACAAT intron-variant
rs1000288291 -- 37,566,749(+) GTCAA(A/C)CCTCA intron-variant, downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for DNALI1 Gene

Variant ID Type Subtype PubMed ID
nsv524834 CNV gain 19592680
nsv834746 CNV loss 17160897
nsv945883 CNV duplication 23825009

Variation tolerance for DNALI1 Gene

Residual Variation Intolerance Score: 22.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.38; 85.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DNALI1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNALI1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNALI1 Gene

Disorders for DNALI1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DNALI1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
primary ciliary dyskinesia
  • kartagener syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for DNALI1

Genetic Association Database (GAD)
DNALI1
Human Genome Epidemiology (HuGE) Navigator
DNALI1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNALI1
genes like me logo Genes that share disorders with DNALI1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DNALI1 Gene

Publications for DNALI1 Gene

  1. Complementary deoxyribonucleic acid cloning and characterization of a putative human axonemal dynein light chain gene. (PMID: 9284741) Kastury K … Bhasin S (The Journal of clinical endocrinology and metabolism 1997) 2 3 4 22 60
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 60

Products for DNALI1 Gene

Sources for DNALI1 Gene

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