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Aliases for DNALI1 Gene

Aliases for DNALI1 Gene

  • Dynein Axonemal Light Intermediate Chain 1 2 3 5
  • Dynein, Axonemal, Light Intermediate Polypeptide 1 2 3
  • DJ423B22.5 (Axonemal Dynein Light Chain (Hp28)) 2 3
  • Inner Dynein Arm, Homolog Of Clamydomonas 2 3
  • Inner Dynein Arm Light Chain, Axonemal 3 4
  • Hp28 3 4
  • Axonemal Dynein Light Intermediate Polypeptide 1 3
  • DJ423B22.5 3
  • P28 3

External Ids for DNALI1 Gene

Previous GeneCards Identifiers for DNALI1 Gene

  • GC01P037857
  • GC01P037077
  • GC01P037449
  • GC01P037451
  • GC01P037452
  • GC01P037691
  • GC01P038023
  • GC01P036139

Summaries for DNALI1 Gene

Entrez Gene Summary for DNALI1 Gene

  • This gene is the human homolog of the Chlamydomonas inner dynein arm gene, p28. The precise function of this gene is not known, however, it is a potential candidate for immotile cilia syndrome (ICS). Ultrastructural defects of the inner dynein arms are seen in patients with ICS. Immotile mutant strains of Chlamydomonas, a biflagellated algae, exhibit similar defects. [provided by RefSeq, Jul 2008]

GeneCards Summary for DNALI1 Gene

DNALI1 (Dynein Axonemal Light Intermediate Chain 1) is a Protein Coding gene. Diseases associated with DNALI1 include Primary Ciliary Dyskinesia. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.. GO annotations related to this gene include microtubule motor activity and dynein heavy chain binding.

UniProtKB/Swiss-Prot for DNALI1 Gene

  • May play a dynamic role in flagellar motility.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNALI1 Gene

Genomics for DNALI1 Gene

Regulatory Elements for DNALI1 Gene

Enhancers for DNALI1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G037470 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14.3 -77.6 -77556 18.3 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZC3H12A LINC01137 MTF1 GNL2 SNIP1 DNALI1 SF3A3 FHL3 FTH1P1 MEAF6
GH01G037513 1.1 ENCODE 22 -42.3 -42288 2.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 SNIP1 GNL2 SF3A3 DNALI1 MEAF6 RPS27P9 FTH1P1 LINC01137 MIR5581
GH01G037507 0.9 ENCODE dbSUPER 25.1 -48.8 -48800 0.9 BCOR ZNF146 BHLHE40 JUNB IKZF1 EED ZNF580 KDM1A IKZF2 DNALI1 LINC01137 ZC3H12A SNIP1 RPS27P9 GNL2 MIR5581 MEAF6
GH01G037605 0.7 Ensembl 24 +49.4 49439 1.3 CTCF PKNOX1 CEBPB TRIM22 REST MIER2 ZIC2 RAD21 ZNF664 POLR2A DNALI1 CDCA8 C1orf109 SNIP1 RPS27P9 ENSG00000233728 GNL2 RSPO1
GH01G037533 1.4 Ensembl ENCODE 11.9 -22.3 -22287 2.4 HDGF FOXA2 CREB3L1 ARNT SIN3A ARID4B YY1 ZNF766 FOS SP3 RPS27P9 DNALI1 MEAF6 LINC01137 LOC105378649 FTH1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNALI1 on UCSC Golden Path with GeneCards custom track

Promoters for DNALI1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004862 -19 201 TBP HDGF ARID4B BMI1 RAD21 YY1 ZNF766 EGR1 IKZF2 EGR2

Genomic Location for DNALI1 Gene

Chromosome:
1
Start:
37,556,919 bp from pter
End:
37,566,857 bp from pter
Size:
9,939 bases
Orientation:
Plus strand

Genomic View for DNALI1 Gene

Genes around DNALI1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNALI1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNALI1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNALI1 Gene

Proteins for DNALI1 Gene

  • Protein details for DNALI1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14645-IDLC_HUMAN
    Recommended name:
    Axonemal dynein light intermediate polypeptide 1
    Protein Accession:
    O14645
    Secondary Accessions:
    • A8K387
    • B4DHN6
    • Q05BL9
    • Q5HYE2
    • Q5TGH0
    • Q7L0I5

    Protein attributes for DNALI1 Gene

    Size:
    258 amino acids
    Molecular mass:
    29662 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAB69193.1; Type=Frameshift; Positions=7, 28, 94, 125, 139, 153; Evidence={ECO:0000305}; Sequence=CAI20553.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAI46082.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for DNALI1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DNALI1 Gene

Post-translational modifications for DNALI1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DNALI1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DNALI1 Gene

Domains & Families for DNALI1 Gene

Gene Families for DNALI1 Gene

Protein Domains for DNALI1 Gene

Suggested Antigen Peptide Sequences for DNALI1 Gene

Graphical View of Domain Structure for InterPro Entry

O14645

UniProtKB/Swiss-Prot:

IDLC_HUMAN :
  • Belongs to the inner dynein arm light chain family.
Family:
  • Belongs to the inner dynein arm light chain family.
genes like me logo Genes that share domains with DNALI1: view

Function for DNALI1 Gene

Molecular function for DNALI1 Gene

UniProtKB/Swiss-Prot Function:
May play a dynamic role in flagellar motility.

Gene Ontology (GO) - Molecular Function for DNALI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity IEA --
GO:0005515 protein binding IPI 15383276
GO:0045504 dynein heavy chain binding IEA --
genes like me logo Genes that share ontologies with DNALI1: view
genes like me logo Genes that share phenotypes with DNALI1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DNALI1 Gene

Localization for DNALI1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNALI1 gene
Compartment Confidence
cytoskeleton 5
extracellular 2
cytosol 2
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for DNALI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA,IDA 19944400
GO:0005930 axoneme IDA,IEA 23849778
GO:0030175 filopodium IEA --
GO:0030286 dynein complex IEA --
genes like me logo Genes that share ontologies with DNALI1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for DNALI1 Gene

Pathways & Interactions for DNALI1 Gene

genes like me logo Genes that share pathways with DNALI1: view

Pathways by source for DNALI1 Gene

1 KEGG pathway for DNALI1 Gene

Gene Ontology (GO) - Biological Process for DNALI1 Gene

None

No data available for SIGNOR curated interactions for DNALI1 Gene

Drugs & Compounds for DNALI1 Gene

No Compound Related Data Available

Transcripts for DNALI1 Gene

Unigene Clusters for DNALI1 Gene

Dynein, axonemal, light intermediate chain 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNALI1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c
SP1: - - -
SP2: - - - - -
SP3: - - - -
SP4: -
SP5:
SP6:

Relevant External Links for DNALI1 Gene

GeneLoc Exon Structure for
DNALI1
ECgene alternative splicing isoforms for
DNALI1

Expression for DNALI1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNALI1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DNALI1 Gene

This gene is overexpressed in Testis (x8.9).

Protein differential expression in normal tissues from HIPED for DNALI1 Gene

This gene is overexpressed in Breast (37.7), Testis (23.7), and Ovary (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for DNALI1 Gene



Protein tissue co-expression partners for DNALI1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DNALI1 Gene:

DNALI1

SOURCE GeneReport for Unigene cluster for DNALI1 Gene:

Hs.406050

mRNA Expression by UniProt/SwissProt for DNALI1 Gene:

O14645-IDLC_HUMAN
Tissue specificity: Expressed in many tissues. A smaller 0.9 kb and a larger 2.5 kb transcripts were detected at the highest level in the testis, at medium levels in the prostate, heart, liver, lung and pancreas, at low levels in the ovary, skeletal muscle and small intestine. Not detected in spleen, colon epithelium, thymus or peripheral blood leukocytes. The 0.9 kb transcript is expressed at a 20-fold higher level than the 2.5 kb transcript in the testis.

Evidence on tissue expression from TISSUES for DNALI1 Gene

  • Lung(4.5)
  • Nervous system(4.5)
  • Spleen(4)
  • Pancreas(2.3)
genes like me logo Genes that share expression patterns with DNALI1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for DNALI1 Gene

Orthologs for DNALI1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DNALI1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNALI1 34 35
  • 99.64 (n)
cow
(Bos Taurus)
Mammalia DNALI1 34 35
  • 91.73 (n)
dog
(Canis familiaris)
Mammalia DNALI1 34 35
  • 90.36 (n)
mouse
(Mus musculus)
Mammalia Dnali1 34 16 35
  • 89.66 (n)
rat
(Rattus norvegicus)
Mammalia Dnali1 34
  • 89.66 (n)
oppossum
(Monodelphis domestica)
Mammalia DNALI1 35
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DNALI1 35
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves DNALI1 34 35
  • 73.46 (n)
lizard
(Anolis carolinensis)
Reptilia DNALI1 35
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dnali1 34
  • 72.97 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16772 34
zebrafish
(Danio rerio)
Actinopterygii dnali1 35 35
  • 76 (a)
OneToMany
LOC100536814 34
  • 72.18 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004030 34
  • 61.27 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG6971 36 34 35
  • 58.37 (n)
worm
(Caenorhabditis elegans)
Secernentea dyla-1 35
  • 31 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7082 35
  • 80 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5036 34
Species where no ortholog for DNALI1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DNALI1 Gene

ENSEMBL:
Gene Tree for DNALI1 (if available)
TreeFam:
Gene Tree for DNALI1 (if available)

Paralogs for DNALI1 Gene

No data available for Paralogs for DNALI1 Gene

Variants for DNALI1 Gene

Sequence variations from dbSNP and Humsavar for DNALI1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
VAR_035701 A colorectal cancer sample
rs1000182103 -- 37,560,431(+) CAAGC(A/G)TGCTG intron-variant
rs1000212313 -- 37,562,552(+) TGGAA(A/G)CTGGT intron-variant
rs1000276192 -- 37,560,329(+) CCTTG(A/G)ACAAT intron-variant
rs1000288291 -- 37,566,749(+) GTCAA(A/C)CCTCA intron-variant, downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for DNALI1 Gene

Variant ID Type Subtype PubMed ID
nsv524834 CNV gain 19592680
nsv834746 CNV loss 17160897
nsv945883 CNV duplication 23825009

Variation tolerance for DNALI1 Gene

Residual Variation Intolerance Score: 22.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.38; 85.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DNALI1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNALI1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNALI1 Gene

Disorders for DNALI1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DNALI1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
primary ciliary dyskinesia
  • ciliary motility disorder
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for DNALI1

Genetic Association Database (GAD)
DNALI1
Human Genome Epidemiology (HuGE) Navigator
DNALI1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNALI1
genes like me logo Genes that share disorders with DNALI1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DNALI1 Gene

Publications for DNALI1 Gene

  1. Complementary deoxyribonucleic acid cloning and characterization of a putative human axonemal dynein light chain gene. (PMID: 9284741) Kastury K. … Bhasin S. (J. Clin. Endocrinol. Metab. 1997) 2 3 4 22 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for DNALI1 Gene

Sources for DNALI1 Gene

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