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Aliases for DNAL1 Gene

Aliases for DNAL1 Gene

  • Dynein, Axonemal, Light Chain 1 2 3
  • C14orf168 3 4 6
  • CILD16 3 6
  • Chromosome 14 Open Reading Frame 168 2
  • Dynein Light Chain 1, Axonemal 3

External Ids for DNAL1 Gene

Previous HGNC Symbols for DNAL1 Gene

  • C14orf168

Previous GeneCards Identifiers for DNAL1 Gene

  • GC14P073183
  • GC14P074111
  • GC14P054279

Summaries for DNAL1 Gene

Entrez Gene Summary for DNAL1 Gene

  • This gene encodes an axonemal dynein light chain which functions as a component of the outer dynein arms complex. This complex acts as the molecular motor that provides the force to move cilia in an ATP-dependent manner. The encoded protein is expressed in tissues with motile cilia or flagella and may be involved in the movement of sperm flagella. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Jan 2011]

GeneCards Summary for DNAL1 Gene

DNAL1 (Dynein, Axonemal, Light Chain 1) is a Protein Coding gene. Diseases associated with DNAL1 include ciliary dyskinesia, primary, 16 and primary ciliary dyskinesia16: dnal1-related primary ciliary dyskinesia. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

Gene Wiki entry for DNAL1 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAL1 Gene

Genomics for DNAL1 Gene

Regulatory Elements for DNAL1 Gene

Genomic Location for DNAL1 Gene

Start:
73,644,875 bp from pter
End:
73,703,732 bp from pter
Size:
58,858 bases
Orientation:
Plus strand

Genomic View for DNAL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DNAL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAL1 Gene

Proteins for DNAL1 Gene

  • Protein details for DNAL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4LDG9-DNAL1_HUMAN
    Recommended name:
    Dynein light chain 1, axonemal
    Protein Accession:
    Q4LDG9
    Secondary Accessions:
    • B2RD38
    • Q5JPB7
    • Q9BS43

    Protein attributes for DNAL1 Gene

    Size:
    190 amino acids
    Molecular mass:
    21533 Da
    Quaternary structure:
    • Interacts with DNAH5.
    SequenceCaution:
    • Sequence=AAH05343.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for DNAL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DNAL1 Gene

Proteomics data for DNAL1 Gene at MOPED

Post-translational modifications for DNAL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for DNAL1 Gene

Domains for DNAL1 Gene

Protein Domains for DNAL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for DNAL1 Gene

Graphical View of Domain Structure for InterPro Entry

Q4LDG9

UniProtKB/Swiss-Prot:

DNAL1_HUMAN :
  • Q4LDG9
Domain:
  • Contains 1 LRRCT domain.
Family:
  • Belongs to the dynein light chain LC1-type family.
Similarity:
  • Contains 4 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with DNAL1: view

No data available for Gene Families for DNAL1 Gene

Function for DNAL1 Gene

Molecular function for DNAL1 Gene

GENATLAS Biochemistry: dynein,axonemal,motor protein interacting with microtubules,light chain 1,inner arm,of unknown function,essential for motility of cilia and flagella,expressed in testis

Gene Ontology (GO) - Molecular Function for DNAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with DNAL1: view

Phenotypes for DNAL1 Gene

genes like me logo Genes that share phenotypes with DNAL1: view

Animal Model Products

CRISPR Products

miRNA for DNAL1 Gene

miRTarBase miRNAs that target DNAL1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DNAL1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for DNAL1 Gene

Localization for DNAL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DNAL1 Gene COMPARTMENTS Subcellular localization image for DNAL1 gene
Compartment Confidence
cytosol 2
nucleus 2
plasma membrane 2
cytoskeleton 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for DNAL1 Gene

Pathways for DNAL1 Gene

genes like me logo Genes that share pathways with DNAL1: view

Pathways by source for DNAL1 Gene

1 KEGG pathway for DNAL1 Gene

Interacting Proteins for DNAL1 Gene

Gene Ontology (GO) - Biological Process for DNAL1 Gene

None

Transcripts for DNAL1 Gene

Unigene Clusters for DNAL1 Gene

Dynein, axonemal, light chain 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DNAL1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAL1 Gene

No ASD Table

Relevant External Links for DNAL1 Gene

GeneLoc Exon Structure for
DNAL1
ECgene alternative splicing isoforms for
DNAL1

Expression for DNAL1 Gene

mRNA expression in normal human tissues for DNAL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DNAL1 Gene

This gene is overexpressed in Testis (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DNAL1 Gene

SOURCE GeneReport for Unigene cluster for DNAL1 Gene Hs.271270

mRNA Expression by UniProt/SwissProt for DNAL1 Gene

Q4LDG9-DNAL1_HUMAN
Tissue specificity: Expressed in tissues carrying motile cilia such as testis.
genes like me logo Genes that share expressions with DNAL1: view

In Situ Assay Products

Orthologs for DNAL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DNAL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNAL1 35
  • 99.82 (n)
  • 99.47 (a)
DNAL1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DNAL1 35
  • 94.21 (n)
  • 95.26 (a)
DNAL1 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DNAL1 35
  • 93.81 (n)
  • 97.27 (a)
DNAL1 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dnal1 35
  • 88.6 (n)
  • 93.16 (a)
Dnal1 36
  • 93 (a)
OneToOne
Dnalc1 16
oppossum
(Monodelphis domestica)
Mammalia DNAL1 36
  • 36 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 69 (a)
OneToMany
-- 36
  • 85 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Dnal1 35
  • 88.77 (n)
  • 93.68 (a)
chicken
(Gallus gallus)
Aves DNAL1 35
  • 80.6 (n)
  • 84.66 (a)
DNAL1 36
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DNAL1 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dnal1 35
  • 74.91 (n)
  • 85.26 (a)
zebrafish
(Danio rerio)
Actinopterygii dnal1 35
  • 73.37 (n)
  • 82.54 (a)
dnal1 36
  • 81 (a)
OneToMany
DNAL1 (2 of 2) 36
  • 78 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004416 35
  • 59.61 (n)
  • 64.02 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10839 36
  • 53 (a)
OneToOne
CG8800 35
  • 55.61 (n)
  • 58.82 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14200 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 76 (a)
OneToOne
Species with no ortholog for DNAL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DNAL1 Gene

ENSEMBL:
Gene Tree for DNAL1 (if available)
TreeFam:
Gene Tree for DNAL1 (if available)

Paralogs for DNAL1 Gene

Selected SIMAP similar genes for DNAL1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with DNAL1: view

No data available for Paralogs for DNAL1 Gene

Variants for DNAL1 Gene

Sequence variations from dbSNP and Humsavar for DNAL1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs6830 -- 73,701,728(+) ATTAC(A/G)AGCAT utr-variant-3-prime
rs1009295 -- 73,687,451(-) ATCTT(C/T)TCCCT intron-variant
rs1012420 -- 73,679,319(+) TGTTG(A/G)TTTTT intron-variant
rs1014151 -- 73,661,240(-) GGCTA(C/T)AGATA intron-variant
rs1043705 -- 73,700,944(+) AACTT(C/T)CAAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for DNAL1 Gene

Variant ID Type Subtype PubMed ID
dgv641e1 CNV Complex 17122850
nsv428295 CNV Gain 18775914
nsv832828 CNV Gain+Loss 17160897
nsv902089 CNV Loss 21882294
dgv1959n71 CNV Loss 21882294
nsv902091 CNV Gain 21882294

Relevant External Links for DNAL1 Gene

HapMap Linkage Disequilibrium report
DNAL1
Human Gene Mutation Database (HGMD)
DNAL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNAL1 Gene

Disorders for DNAL1 Gene

(1) OMIM Diseases for DNAL1 Gene (610062)

UniProtKB/Swiss-Prot

DNAL1_HUMAN
  • Ciliary dyskinesia, primary, 16 (CILD16) [MIM:614017]: A disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia; reduced fertility is often observed in male patients due to abnormalities of sperm tails. Half of the patients exhibit randomization of left-right body asymmetry and situs inversus, due to dysfunction of monocilia at the embryonic node. Primary ciliary dyskinesia associated with situs inversus is referred to as Kartagener syndrome. {ECO:0000269 PubMed:21496787}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for DNAL1 Gene

Relevant External Links for DNAL1

Genetic Association Database (GAD)
DNAL1
Human Genome Epidemiology (HuGE) Navigator
DNAL1
genes like me logo Genes that share disorders with DNAL1: view

Publications for DNAL1 Gene

  1. Identification and analysis of axonemal dynein light chain 1 in primary ciliary dyskinesia patients. (PMID: 15845866) Horvath J. … Omran H. (Am. J. Respir. Cell Mol. Biol. 2005) 2 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Primary ciliary dyskinesia caused by homozygous mutation in DNAL1, encoding dynein light chain 1. (PMID: 21496787) Mazor M. … Parvari R. (Am. J. Hum. Genet. 2011) 3 4
  5. Knockdown of MAP4 and DNAL1 produces a post-fusion and pre-nuclear translocation impairment in HIV-1 replication. (PMID: 22018492) Gallo D.E. … Hope T.J. (Virology 2012) 3

Products for DNAL1 Gene

Sources for DNAL1 Gene

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