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Aliases for DNAJC9-AS1 Gene

Subcategory (RNA class) for DNAJC9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNAJC9-AS1 Gene

  • DNAJC9 Antisense RNA 1 2 3 4 5
  • DNAJC9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C10orf103 3 4
  • Chromosome 10 Open Reading Frame 103 2
  • DNAJC9 Antisense Gene Protein 1 4
  • BA537A6.3 3

External Ids for DNAJC9-AS1 Gene

Previous HGNC Symbols for DNAJC9-AS1 Gene

  • C10orf103

Previous GeneCards Identifiers for DNAJC9-AS1 Gene

  • GC10P075009

Summaries for DNAJC9-AS1 Gene

GeneCards Summary for DNAJC9-AS1 Gene

DNAJC9-AS1 (DNAJC9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DNAJC9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJC9-AS1 Gene

Genomics for DNAJC9-AS1 Gene

GeneHancer (GH) Regulatory Elements for DNAJC9-AS1 Gene

Promoters and enhancers for DNAJC9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I073243 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.1 -1107 5.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 DNAJC9 DNAJC9-AS1 SEC24C NDST2 ZSWIM8 NUDT13 DNAJB12 GLUD1P3 ZSWIM8-AS1 ENSG00000272140
GH10I073886 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +643.6 643649 10 HDGF PKNOX1 FOXA2 SIN3A ZNF2 IRF4 ZNF207 ZNF143 FOS JUNB NDST2 ENSG00000272791 ENSG00000268584 AGAP5 ENSG00000227540 C10orf55 FUT11 ENSG00000229990 ENSG00000272599 ENSG00000224195
GH10I072951 Promoter/Enhancer 1.3 EPDnew ENCODE 3.7 -293.4 -293438 4.2 ELF3 ATF1 FOXA2 ARID4B DMAP1 RAD21 YY1 ZNF335 SCRT2 ATF7 PLA2G12B CFAP70 NUDT13 OIT3 ECD DNAJB12 DNAJC9-AS1 NPM1P24
GH10I073250 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 +5.0 4974 3.5 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 MRPS16 ENSG00000227540 DNAJB12 NDST2 ZSWIM8 SEC24C AP3M1 ECD NUDT13 ENSG00000272140
GH10I073261 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.1 15073 2.7 ATF1 PKNOX1 ARNT NCOA2 ATF7 FOS ZNF592 MEF2D ATF4 SMARCA4 NUDT13 CFAP70 GLUD1P3 DUSP8P5 ENSG00000272140 RPL17P50 ECD AGAP5 AP3M1 ENSG00000224195
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DNAJC9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNAJC9-AS1 Gene

Genomic Locations for DNAJC9-AS1 Gene
chr10:73,247,360-73,276,984
(GRCh38/hg38)
Size:
29,625 bases
Orientation:
Plus strand
chr10:75,007,118-75,036,742
(GRCh37/hg19)

Genomic View for DNAJC9-AS1 Gene

Genes around DNAJC9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJC9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJC9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJC9-AS1 Gene

Proteins for DNAJC9-AS1 Gene

  • Protein details for DNAJC9-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NH13-DAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein DNAJC9-AS1
    Protein Accession:
    A6NH13

    Protein attributes for DNAJC9-AS1 Gene

    Size:
    148 amino acids
    Molecular mass:
    15587 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DNAJC9-AS1 Gene

Post-translational modifications for DNAJC9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAJC9-AS1 Gene

Domains & Families for DNAJC9-AS1 Gene

Protein Domains for DNAJC9-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DNAJC9-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAJC9-AS1 Gene

Function for DNAJC9-AS1 Gene

Phenotypes From GWAS Catalog for DNAJC9-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAJC9-AS1 Gene

Localization for DNAJC9-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNAJC9-AS1 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNAJC9-AS1 Gene

Pathways & Interactions for DNAJC9-AS1 Gene

SuperPathways for DNAJC9-AS1 Gene

No Data Available

Interacting Proteins for DNAJC9-AS1 Gene

Gene Ontology (GO) - Biological Process for DNAJC9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAJC9-AS1 Gene

Drugs & Compounds for DNAJC9-AS1 Gene

No Compound Related Data Available

Transcripts for DNAJC9-AS1 Gene

mRNA/cDNA for DNAJC9-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DNAJC9-AS1 Gene

DNAJC9 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJC9-AS1 Gene

No ASD Table

Relevant External Links for DNAJC9-AS1 Gene

GeneLoc Exon Structure for
DNAJC9-AS1
ECgene alternative splicing isoforms for
DNAJC9-AS1

Expression for DNAJC9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAJC9-AS1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for DNAJC9-AS1 Gene



SOURCE GeneReport for Unigene cluster for DNAJC9-AS1 Gene:

Hs.661857
genes like me logo Genes that share expression patterns with DNAJC9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAJC9-AS1 Gene

Orthologs for DNAJC9-AS1 Gene

Evolution for DNAJC9-AS1 Gene

ENSEMBL:
Gene Tree for DNAJC9-AS1 (if available)
TreeFam:
Gene Tree for DNAJC9-AS1 (if available)

No data available for Orthologs for DNAJC9-AS1 Gene

Paralogs for DNAJC9-AS1 Gene

No data available for Paralogs for DNAJC9-AS1 Gene

Variants for DNAJC9-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNAJC9-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs104894168 pathogenic, Combined oxidative phosphorylation deficiency 2 73,250,935(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs111672256 likely-benign, Combined oxidative phosphorylation deficiency 73,252,577(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs112218454 uncertain-significance, Combined oxidative phosphorylation deficiency 73,249,873(+) G/C genic_upstream_transcript_variant, intron_variant
rs11538567 likely-benign, Combined oxidative phosphorylation deficiency 73,252,585(+) C/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs11594611 uncertain-significance, Combined oxidative phosphorylation deficiency 73,252,035(+) C/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DNAJC9-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv825467 CNV loss 20364138

Additional Variant Information for DNAJC9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJC9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAJC9-AS1 Gene

Disorders for DNAJC9-AS1 Gene

Additional Disease Information for DNAJC9-AS1

No disorders were found for DNAJC9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAJC9-AS1 Gene

Publications for DNAJC9-AS1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DNAJC9-AS1 Gene

Sources for DNAJC9-AS1 Gene

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