Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DNAJC27-AS1 Gene

Subcategory (RNA class) for DNAJC27-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNAJC27-AS1 Gene

  • DNAJC27 Antisense RNA 1 2 3 5
  • DNAJC27 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for DNAJC27-AS1 Gene

Previous GeneCards Identifiers for DNAJC27-AS1 Gene

  • GC02P025196

Summaries for DNAJC27-AS1 Gene

GeneCards Summary for DNAJC27-AS1 Gene

DNAJC27-AS1 (DNAJC27 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJC27-AS1 Gene

Genomics for DNAJC27-AS1 Gene

Regulatory Elements for DNAJC27-AS1 Gene

Enhancers for DNAJC27-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G024885 1.2 FANTOM5 Ensembl ENCODE 10.7 -85.0 -84990 2.8 SCRT1 PKNOX1 SMARCA4 POLR2A BHLHE40 NR2F1 FOS CHD2 ADCY3 DNAJC27 RPS13P5 DNAJC27-AS1 ENSG00000202479 PTRHD1 LOC105377626
GH02G024827 1.1 Ensembl ENCODE 10.2 -143.5 -143534 1.9 ELF3 HDGF PTBP1 AGO1 ARID4B NFXL1 ZNF48 RAD21 ZNF143 CREM NCOA1 ADCY3 CENPO PTRHD1 DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 ITSN2 ENSG00000242628
GH02G025105 0.9 Ensembl ENCODE 11 +134.6 134561 1.1 SOX5 SOX13 FOXA2 RFX1 SIN3A FOXA1 JUND FOSL2 FOS NFE2L2 DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 ADCY3 SUCLA2P3 GC02P025140 PIR39938
GH02G024409 1 Ensembl ENCODE 9.9 -560.9 -560932 2.9 CTCF MXI1 BACH1 RAD21 RFX5 ZNF316 ZNF143 SMC3 NFE2 MAFK FAM228A ITSN2 CENPO PTRHD1 NCOA1 ADCY3 DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5
GH02G024720 1 Ensembl ENCODE 9.6 -249.3 -249346 3.3 TBL1XR1 BACH1 EBF1 RAD21 RELA YY1 POLR2A FOXK2 EED PRDM10 PTRHD1 NCOA1 CENPO DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 ADCY3 RNU6-936P LOC105369164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNAJC27-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DNAJC27-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000114106 610 2401 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SP3 NFYC GLIS1 RCOR2 NBN

Genomic Location for DNAJC27-AS1 Gene

Chromosome:
2
Start:
24,971,390 bp from pter
End:
25,039,694 bp from pter
Size:
68,305 bases
Orientation:
Plus strand

Genomic View for DNAJC27-AS1 Gene

Genes around DNAJC27-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJC27-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJC27-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJC27-AS1 Gene

Proteins for DNAJC27-AS1 Gene

Post-translational modifications for DNAJC27-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAJC27-AS1 Gene

Domains & Families for DNAJC27-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAJC27-AS1 Gene

Function for DNAJC27-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAJC27-AS1 Gene

Localization for DNAJC27-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNAJC27-AS1 Gene

Pathways & Interactions for DNAJC27-AS1 Gene

SuperPathways for DNAJC27-AS1 Gene

No Data Available

Interacting Proteins for DNAJC27-AS1 Gene

Gene Ontology (GO) - Biological Process for DNAJC27-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAJC27-AS1 Gene

Drugs & Compounds for DNAJC27-AS1 Gene

No Compound Related Data Available

Transcripts for DNAJC27-AS1 Gene

mRNA/cDNA for DNAJC27-AS1 Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DNAJC27-AS1 Gene

DNAJC27 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJC27-AS1 Gene

No ASD Table

Relevant External Links for DNAJC27-AS1 Gene

GeneLoc Exon Structure for
DNAJC27-AS1
ECgene alternative splicing isoforms for
DNAJC27-AS1

Expression for DNAJC27-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAJC27-AS1 Gene

SOURCE GeneReport for Unigene cluster for DNAJC27-AS1 Gene:

Hs.436366
genes like me logo Genes that share expression patterns with DNAJC27-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAJC27-AS1 Gene

Orthologs for DNAJC27-AS1 Gene

Evolution for DNAJC27-AS1 Gene

ENSEMBL:
Gene Tree for DNAJC27-AS1 (if available)
TreeFam:
Gene Tree for DNAJC27-AS1 (if available)

No data available for Orthologs for DNAJC27-AS1 Gene

Paralogs for DNAJC27-AS1 Gene

No data available for Paralogs for DNAJC27-AS1 Gene

Variants for DNAJC27-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNAJC27-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000014400 -- 24,998,088(+) AAAAA(A/G)AAAAG intron-variant
rs1000018707 -- 24,977,139(+) CTTAC(-/T)TTTTT intron-variant
rs1000087879 -- 24,984,038(+) TGCAC(A/G)GCACA intron-variant
rs1000145103 -- 25,008,797(+) CAGGC(A/G)TCAGC intron-variant
rs1000150353 -- 25,024,721(+) CACTG(C/T)AACCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNAJC27-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1878n106 CNV deletion 24896259
esv1663408 CNV deletion 17803354
esv2106301 CNV deletion 18987734
esv2552379 CNV deletion 19546169
esv2678097 CNV deletion 23128226
esv2719822 CNV deletion 23290073
esv2762426 CNV loss 21179565
esv3394899 CNV insertion 20981092
esv3402695 CNV duplication 20981092
esv3553988 CNV deletion 23714750
esv3590084 CNV loss 21293372
esv3594 CNV loss 18987735
esv8717 CNV loss 19470904
nsv1004529 CNV loss 25217958
nsv1008732 CNV loss 25217958
nsv1071581 CNV deletion 25765185
nsv1114062 CNV deletion 24896259
nsv1117235 CNV tandem duplication 24896259
nsv1146006 CNV deletion 26484159
nsv476259 CNV novel sequence insertion 20440878
nsv955031 CNV deletion 24416366
nsv955095 CNV deletion 24416366
nsv997725 CNV gain 25217958

Relevant External Links for DNAJC27-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJC27-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAJC27-AS1 Gene

Disorders for DNAJC27-AS1 Gene

Relevant External Links for DNAJC27-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNAJC27-AS1

No disorders were found for DNAJC27-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAJC27-AS1 Gene

Publications for DNAJC27-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for DNAJC27-AS1 Gene

Sources for DNAJC27-AS1 Gene

Content
Loading form....