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Aliases for DNAJC27-AS1 Gene

Subcategory (RNA class) for DNAJC27-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNAJC27-AS1 Gene

  • DNAJC27 Antisense RNA 1 2 3 5
  • DNAJC27 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for DNAJC27-AS1 Gene

Previous GeneCards Identifiers for DNAJC27-AS1 Gene

  • GC02P025196

Summaries for DNAJC27-AS1 Gene

GeneCards Summary for DNAJC27-AS1 Gene

DNAJC27-AS1 (DNAJC27 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJC27-AS1 Gene

Genomics for DNAJC27-AS1 Gene

Regulatory Elements for DNAJC27-AS1 Gene

Enhancers for DNAJC27-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F024885 1.2 FANTOM5 Ensembl ENCODE 10.7 -85.0 -84990 2.8 SCRT1 PKNOX1 SMARCA4 POLR2A BHLHE40 CHD2 ADCY3 DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 PTRHD1 LOC105377626
GH02F024827 1.1 Ensembl ENCODE 10.1 -143.5 -143534 1.9 ELF3 ARID4B NFXL1 ZNF48 RAD21 ZNF143 CREM DEK THAP11 ZNF263 NCOA1 ADCY3 CENPO PTRHD1 DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 ITSN2 ENSG00000242628
GH02F025105 0.9 Ensembl ENCODE 11 +134.4 134444 1.3 SOX5 SOX13 JUND RFX1 SIN3A FOS FOSL2 NFE2L2 ENSG00000202479 RPS13P5 DNAJC27 DNAJC27-AS1 ADCY3 SUCLA2P3 GC02P025140 PIR39938
GH02F024409 1 Ensembl ENCODE 9.9 -560.9 -560932 2.9 CTCF BACH1 RAD21 RFX5 ZNF316 ZNF143 SMC3 NFE2 MAFK NFE2L2 FAM228A ITSN2 CENPO PTRHD1 NCOA1 ADCY3 ENSG00000202479 RPS13P5 DNAJC27 DNAJC27-AS1
GH02F024720 1 Ensembl ENCODE 9.6 -249.3 -249346 3.3 TBL1XR1 EBF1 RAD21 YY1 RELA POLR2A EED PRDM10 MTA2 BHLHE40 PTRHD1 NCOA1 CENPO DNAJC27 DNAJC27-AS1 ENSG00000202479 RPS13P5 ADCY3 RNU6-936P LOC105369164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNAJC27-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DNAJC27-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000675816 610 2801 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207

Genomic Location for DNAJC27-AS1 Gene

Chromosome:
2
Start:
24,971,390 bp from pter
End:
25,039,694 bp from pter
Size:
68,305 bases
Orientation:
Plus strand

Genomic View for DNAJC27-AS1 Gene

Genes around DNAJC27-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJC27-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJC27-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJC27-AS1 Gene

Proteins for DNAJC27-AS1 Gene

Post-translational modifications for DNAJC27-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAJC27-AS1 Gene

Domains & Families for DNAJC27-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAJC27-AS1 Gene

Function for DNAJC27-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAJC27-AS1 Gene

Localization for DNAJC27-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNAJC27-AS1 Gene

Pathways & Interactions for DNAJC27-AS1 Gene

SuperPathways for DNAJC27-AS1 Gene

No Data Available

Interacting Proteins for DNAJC27-AS1 Gene

Gene Ontology (GO) - Biological Process for DNAJC27-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAJC27-AS1 Gene

Transcripts for DNAJC27-AS1 Gene

mRNA/cDNA for DNAJC27-AS1 Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DNAJC27-AS1 Gene

DNAJC27 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJC27-AS1 Gene

No ASD Table

Relevant External Links for DNAJC27-AS1 Gene

GeneLoc Exon Structure for
DNAJC27-AS1
ECgene alternative splicing isoforms for
DNAJC27-AS1

Expression for DNAJC27-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DNAJC27-AS1 Gene

SOURCE GeneReport for Unigene cluster for DNAJC27-AS1 Gene:

Hs.436366
genes like me logo Genes that share expression patterns with DNAJC27-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DNAJC27-AS1 Gene

Orthologs for DNAJC27-AS1 Gene

Evolution for DNAJC27-AS1 Gene

ENSEMBL:
Gene Tree for DNAJC27-AS1 (if available)
TreeFam:
Gene Tree for DNAJC27-AS1 (if available)

No data available for Orthologs for DNAJC27-AS1 Gene

Paralogs for DNAJC27-AS1 Gene

No data available for Paralogs for DNAJC27-AS1 Gene

Variants for DNAJC27-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNAJC27-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10165212 -- 25,004,732(+) GGGAG(G/T)CCCTG intron-variant
rs10165331 -- 25,004,829(+) tgagg(C/T)cagga intron-variant
rs10169237 -- 25,006,581(+) agtac(A/G)gtggc intron-variant
rs10169985 -- 25,033,651(+) TAGCA(A/G)CATCT intron-variant
rs10171403 -- 24,982,031(+) agcta(G/T)gggat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNAJC27-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv997725 CNV gain 25217958
nsv955095 CNV deletion 24416366
nsv955031 CNV deletion 24416366
nsv476259 CNV novel sequence insertion 20440878
nsv1146006 CNV deletion 26484159
nsv1117235 CNV tandem duplication 24896259
nsv1114062 CNV deletion 24896259
nsv1071581 CNV deletion 25765185
nsv1008732 CNV loss 25217958
nsv1004529 CNV loss 25217958
esv8717 CNV loss 19470904
esv3594 CNV loss 18987735
esv3590084 CNV loss 21293372
esv3553988 CNV deletion 23714750
esv3402695 CNV duplication 20981092
esv3394899 CNV insertion 20981092
esv2762426 CNV loss 21179565
esv2719822 CNV deletion 23290073
esv2678097 CNV deletion 23128226
esv2552379 CNV deletion 19546169
esv2106301 CNV deletion 18987734
esv1663408 CNV deletion 17803354
dgv1878n106 CNV deletion 24896259

Relevant External Links for DNAJC27-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJC27-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAJC27-AS1 Gene

Disorders for DNAJC27-AS1 Gene

Relevant External Links for DNAJC27-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNAJC27-AS1

No disorders were found for DNAJC27-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAJC27-AS1 Gene

Publications for DNAJC27-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for DNAJC27-AS1 Gene

Sources for DNAJC27-AS1 Gene

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