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Aliases for DNAJB9 Gene

Aliases for DNAJB9 Gene

  • DnaJ Heat Shock Protein Family (Hsp40) Member B9 2 3 5
  • Microvascular Endothelial Differentiation Gene 1 Protein 3 4
  • Endoplasmic Reticulum DNA J Domain-Containing Protein 4 3 4
  • DnaJ (Hsp40) Homolog, Subfamily B, Member 9 2 3
  • ER-Resident Protein ERdj4 3 4
  • MDG-1 3 4
  • ERdj4 3 4
  • MDG1 3 4
  • Endoplasmic Reticulum DnaJ Homolog 4 3
  • DnaJ Homolog Subfamily B Member 9 3
  • MSTP049 3
  • MST049 3

External Ids for DNAJB9 Gene

Previous HGNC Symbols for DNAJB9 Gene

  • MDG1

Previous GeneCards Identifiers for DNAJB9 Gene

  • GC07P106694
  • GC07P107756
  • GC07P107770
  • GC07P107804
  • GC07P107997
  • GC07P108210
  • GC07P102578

Summaries for DNAJB9 Gene

Entrez Gene Summary for DNAJB9 Gene

  • This gene is a member of the J protein family. J proteins function in many cellular processes by regulating the ATPase activity of 70 kDa heat shock proteins. This gene is a member of the type 2 subgroup of DnaJ proteins. The encoded protein is localized to the endoplasmic reticulum. This protein is induced by endoplasmic reticulum stress and plays a role in protecting stressed cells from apoptosis. [provided by RefSeq, Dec 2010]

GeneCards Summary for DNAJB9 Gene

DNAJB9 (DnaJ Heat Shock Protein Family (Hsp40) Member B9) is a Protein Coding gene. Among its related pathways are Unfolded Protein Response (UPR) and Metabolism of proteins. Gene Ontology (GO) annotations related to this gene include misfolded protein binding. An important paralog of this gene is DNAJB5.

UniProtKB/Swiss-Prot for DNAJB9 Gene

  • Involved in endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins. Acts as a co-chaperone with an Hsp70 protein.

Gene Wiki entry for DNAJB9 Gene

Additional gene information for DNAJB9 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJB9 Gene

Genomics for DNAJB9 Gene

GeneHancer (GH) Regulatory Elements for DNAJB9 Gene

Promoters and enhancers for DNAJB9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I108567 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.3 269 4.5 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC THAP5 PNPLA8 DNAJB9 ENSG00000272854 CBLL1 LOC105375448
GH07I108523 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 12.2 -43.7 -43656 5.4 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 PNPLA8 THAP5 ENSG00000272854 DNAJB9 ENSG00000273055 RPL7P32 GC07P108537 GC07M108510
GH07I108452 Enhancer 0.8 ENCODE dbSUPER 9.6 -116.9 -116850 0.5 CTCF ZNF189 REST RAD21 ZSCAN21 ZNF143 HMBOX1 SMC3 ZNF24 RUNX3 THAP5 PNPLA8 DNAJB9 NRCAM GC07M108348
GH07I108497 Enhancer 0.7 ENCODE 10.5 -72.3 -72256 0.2 CTCF TFAP4 LEF1 TAF9B ARNT RAD21 CHAMP1 GATA3 NCOR1 ARID2 PNPLA8 DNAJB9 THAP5 RPL7P32 PIR53132
GH07I108611 Enhancer 0.6 ENCODE 10.7 +41.9 41884 0.2 SMARCE1 SMARCA5 NFIB NEUROD1 DPF2 ELF1 FOXA1 ZNF217 GATA3 JUND PNPLA8 DNAJB9 THAP5 LOC105375448 LOC100419644
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DNAJB9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the DNAJB9 gene promoter:

Genomic Locations for DNAJB9 Gene

Genomic Locations for DNAJB9 Gene
chr7:108,569,568-108,574,850
(GRCh38/hg38)
Size:
5,283 bases
Orientation:
Plus strand
chr7:108,210,012-108,215,294
(GRCh37/hg19)

Genomic View for DNAJB9 Gene

Genes around DNAJB9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJB9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJB9 Gene

Proteins for DNAJB9 Gene

  • Protein details for DNAJB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UBS3-DNJB9_HUMAN
    Recommended name:
    DnaJ homolog subfamily B member 9
    Protein Accession:
    Q9UBS3

    Protein attributes for DNAJB9 Gene

    Size:
    223 amino acids
    Molecular mass:
    25518 Da
    Quaternary structure:
    • Interacts with DERL1.

    Three dimensional structures from OCA and Proteopedia for DNAJB9 Gene

neXtProt entry for DNAJB9 Gene

Post-translational modifications for DNAJB9 Gene

No Post-translational modifications

Other Protein References for DNAJB9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DNAJB9 Gene

Domains & Families for DNAJB9 Gene

Gene Families for DNAJB9 Gene

Protein Domains for DNAJB9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DNAJB9: view

No data available for UniProtKB/Swiss-Prot for DNAJB9 Gene

Function for DNAJB9 Gene

Molecular function for DNAJB9 Gene

UniProtKB/Swiss-Prot Function:
Involved in endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins. Acts as a co-chaperone with an Hsp70 protein.

Gene Ontology (GO) - Molecular Function for DNAJB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19815549
GO:0051787 misfolded protein binding IDA 18400946
genes like me logo Genes that share ontologies with DNAJB9: view
genes like me logo Genes that share phenotypes with DNAJB9: view

Animal Model Products

miRNA for DNAJB9 Gene

miRTarBase miRNAs that target DNAJB9

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DNAJB9 Gene

Localization for DNAJB9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DNAJB9 Gene

Endoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNAJB9 gene
Compartment Confidence
extracellular 5
nucleus 5
endoplasmic reticulum 5
cytoskeleton 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for DNAJB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus ISS,IEA --
GO:0005737 cytoplasm ISS,IEA --
GO:0005783 endoplasmic reticulum IDA,IEA 21231916
GO:0005788 endoplasmic reticulum lumen IEA --
GO:0005789 endoplasmic reticulum membrane TAS --
genes like me logo Genes that share ontologies with DNAJB9: view

Pathways & Interactions for DNAJB9 Gene

genes like me logo Genes that share pathways with DNAJB9: view

Pathways by source for DNAJB9 Gene

Gene Ontology (GO) - Biological Process for DNAJB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030433 ubiquitin-dependent ERAD pathway IEA,IMP 18400946
GO:0036498 IRE1-mediated unfolded protein response TAS --
genes like me logo Genes that share ontologies with DNAJB9: view

No data available for SIGNOR curated interactions for DNAJB9 Gene

Drugs & Compounds for DNAJB9 Gene

No Compound Related Data Available

Transcripts for DNAJB9 Gene

mRNA/cDNA for DNAJB9 Gene

Unigene Clusters for DNAJB9 Gene

DnaJ (Hsp40) homolog, subfamily B, member 9:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJB9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b
SP1: -
SP2: - -
SP3:

Relevant External Links for DNAJB9 Gene

GeneLoc Exon Structure for
DNAJB9
ECgene alternative splicing isoforms for
DNAJB9

Expression for DNAJB9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAJB9 Gene

mRNA differential expression in normal tissues according to GTEx for DNAJB9 Gene

This gene is overexpressed in Liver (x4.8).

Protein differential expression in normal tissues from HIPED for DNAJB9 Gene

This gene is overexpressed in Liver (18.0), Testis (13.9), and Ovary (10.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DNAJB9 Gene



Protein tissue co-expression partners for DNAJB9 Gene

NURSA nuclear receptor signaling pathways regulating expression of DNAJB9 Gene:

DNAJB9

SOURCE GeneReport for Unigene cluster for DNAJB9 Gene:

Hs.741182

Evidence on tissue expression from TISSUES for DNAJB9 Gene

  • Nervous system(4.8)
  • Liver(4.5)
  • Heart(2.4)
  • Kidney(2.1)
genes like me logo Genes that share expression patterns with DNAJB9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAJB9 Gene

Orthologs for DNAJB9 Gene

This gene was present in the common ancestor of animals.

Orthologs for DNAJB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNAJB9 33 34
  • 99.7 (n)
dog
(Canis familiaris)
Mammalia DNAJB9 33 34
  • 93.99 (n)
cow
(Bos Taurus)
Mammalia DNAJB9 33 34
  • 93.09 (n)
mouse
(Mus musculus)
Mammalia Dnajb9 33 16 34
  • 91.44 (n)
rat
(Rattus norvegicus)
Mammalia Dnajb9 33
  • 90.39 (n)
oppossum
(Monodelphis domestica)
Mammalia DNAJB9 34
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DNAJB9 34
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves DNAJB9 33 34
  • 76.74 (n)
lizard
(Anolis carolinensis)
Reptilia DNAJB9 34
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dnajb9 33
  • 72.85 (n)
zebrafish
(Danio rerio)
Actinopterygii dnajb9a 33 34
  • 69.33 (n)
dnajb9b 34
  • 65 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG7130 34
  • 27 (a)
OneToOne
Species where no ortholog for DNAJB9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DNAJB9 Gene

ENSEMBL:
Gene Tree for DNAJB9 (if available)
TreeFam:
Gene Tree for DNAJB9 (if available)

Paralogs for DNAJB9 Gene

Paralogs for DNAJB9 Gene

(7) SIMAP similar genes for DNAJB9 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with DNAJB9: view

Variants for DNAJB9 Gene

Sequence variations from dbSNP and Humsavar for DNAJB9 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000847253 -- 108,574,904(+) C/T downstream_transcript_variant
rs1001283581 -- 108,568,753(+) G/T upstream_transcript_variant
rs1001363431 -- 108,574,669(+) T/C 3_prime_UTR_variant
rs1001374272 -- 108,571,118(+) T/C intron_variant
rs1001508720 -- 108,570,772(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DNAJB9 Gene

Variant ID Type Subtype PubMed ID
esv3572052 CNV loss 25503493

Variation tolerance for DNAJB9 Gene

Residual Variation Intolerance Score: 58% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.22; 52.35% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for DNAJB9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJB9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNAJB9 Gene

Disorders for DNAJB9 Gene

Additional Disease Information for DNAJB9

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DNAJB9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAJB9 Gene

Publications for DNAJB9 Gene

  1. ERdj4 and ERdj5 are required for endoplasmic reticulum-associated protein degradation of misfolded surfactant protein C. (PMID: 18400946) Dong M … Weaver TE (Molecular biology of the cell 2008) 3 4 22 58
  2. HLA-B35 upregulates endothelin-1 and downregulates endothelial nitric oxide synthase via endoplasmic reticulum stress response in endothelial cells. (PMID: 20335527) Lenna S … Scorza R (Journal of immunology (Baltimore, Md. : 1950) 2010) 3 22 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 58
  5. XBP-1 regulates a subset of endoplasmic reticulum resident chaperone genes in the unfolded protein response. (PMID: 14559994) Lee AH … Glimcher LH (Molecular and cellular biology 2003) 3 22 58

Products for DNAJB9 Gene

Sources for DNAJB9 Gene

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