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Aliases for DNAJB8-AS1 Gene

Subcategory (RNA class) for DNAJB8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNAJB8-AS1 Gene

  • DNAJB8 Antisense RNA 1 2 3 5
  • DNAJB8 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for DNAJB8-AS1 Gene

Previous GeneCards Identifiers for DNAJB8-AS1 Gene

  • GC03P128184

Summaries for DNAJB8-AS1 Gene

GeneCards Summary for DNAJB8-AS1 Gene

DNAJB8-AS1 (DNAJB8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJB8-AS1 Gene

Genomics for DNAJB8-AS1 Gene

Regulatory Elements for DNAJB8-AS1 Gene

Enhancers for DNAJB8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F129309 0.9 ENCODE 16.2 +850.3 850307 8.8 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 HMCES ISY1 ENSG00000248659 MARK2P6 MARK3P3 DNAJB8-AS1 OR7E21P OR7E129P MARK2P17 DNAJB8
GH03F128431 0.8 FANTOM5 Ensembl ENCODE 13.2 -29.4 -29439 4.8 PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 DNAJB8-AS1 DNAJB8 RUVBL1 H1FX LINC01565 GATA2 GC03M128409 GC03P128459
GH03F128481 1 ENCODE 11.9 +24.2 24155 11.8 HDGF PKNOX1 ZFP64 SIN3A ARID4B DMAP1 FOS ZNF263 SP3 NFYC RPL32P3 ISY1 DNAJB8 DNAJB8-AS1 RUVBL1 H1FX H1FX-AS1 IFT122 ENSG00000244932 GATA2-AS1
GH03F128495 1 FANTOM5 ENCODE 11.9 +32.1 32068 0.9 HDGF HDAC1 TAL1 CDC5L ZNF48 POLR2A GATA2 NCOR1 CREM SMARCE1 GATA2 DNAJB8 DNAJB8-AS1 RUVBL1 EEFSEC LOC90246
GH03F128496 1.6 FANTOM5 Ensembl ENCODE 11.9 +33.7 33667 2.2 TBP HDGF HDAC1 TBL1XR1 SIN3A BMI1 ZNF48 RAD21 YY1 GATA2 DNAJB8 GATA2 DNAJB8-AS1 RUVBL1 LINC01565 GATA2-AS1 TMED10P2 ABTB1 EEFSEC LOC90246
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DNAJB8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DNAJB8-AS1 Gene

Chromosome:
3
Start:
128,463,594 bp from pter
End:
128,472,317 bp from pter
Size:
8,724 bases
Orientation:
Plus strand

Genomic View for DNAJB8-AS1 Gene

Genes around DNAJB8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJB8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJB8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJB8-AS1 Gene

Proteins for DNAJB8-AS1 Gene

Post-translational modifications for DNAJB8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAJB8-AS1 Gene

Domains & Families for DNAJB8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAJB8-AS1 Gene

Function for DNAJB8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAJB8-AS1 Gene

Localization for DNAJB8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNAJB8-AS1 Gene

Pathways & Interactions for DNAJB8-AS1 Gene

SuperPathways for DNAJB8-AS1 Gene

No Data Available

Interacting Proteins for DNAJB8-AS1 Gene

Gene Ontology (GO) - Biological Process for DNAJB8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAJB8-AS1 Gene

Transcripts for DNAJB8-AS1 Gene

mRNA/cDNA for DNAJB8-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DNAJB8-AS1 Gene

DNAJB8 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJB8-AS1 Gene

No ASD Table

Relevant External Links for DNAJB8-AS1 Gene

GeneLoc Exon Structure for
DNAJB8-AS1
ECgene alternative splicing isoforms for
DNAJB8-AS1

Expression for DNAJB8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DNAJB8-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DNAJB8-AS1 Gene

This gene is overexpressed in Testis (x51.2).

SOURCE GeneReport for Unigene cluster for DNAJB8-AS1 Gene:

Hs.683815
genes like me logo Genes that share expression patterns with DNAJB8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DNAJB8-AS1 Gene

Orthologs for DNAJB8-AS1 Gene

Evolution for DNAJB8-AS1 Gene

ENSEMBL:
Gene Tree for DNAJB8-AS1 (if available)
TreeFam:
Gene Tree for DNAJB8-AS1 (if available)

No data available for Orthologs for DNAJB8-AS1 Gene

Paralogs for DNAJB8-AS1 Gene

No data available for Paralogs for DNAJB8-AS1 Gene

Variants for DNAJB8-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNAJB8-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111696378 -- 128,466,595(+) TTGCT(A/G)ACTTG intron-variant, utr-variant-5-prime
rs111764033 -- 128,465,897(+) TGAAG(A/G)TGGTG intron-variant, utr-variant-5-prime
rs111817110 -- 128,470,752(+) AAAGG(A/G)CCTGG intron-variant
rs112059249 -- 128,463,004(+) AGGGC(A/G)TGCTG upstream-variant-2KB, reference, missense
rs112102935 -- 128,464,856(+) CCCTT(C/T)CCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DNAJB8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8565n54 CNV loss 21841781
esv2759176 CNV loss 17122850
nsv470905 CNV loss 18288195
nsv508240 CNV deletion 20534489
nsv516926 CNV loss 19592680

Relevant External Links for DNAJB8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJB8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAJB8-AS1 Gene

Disorders for DNAJB8-AS1 Gene

Relevant External Links for DNAJB8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNAJB8-AS1

No disorders were found for DNAJB8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAJB8-AS1 Gene

Publications for DNAJB8-AS1 Gene

  1. Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions. (PMID: 27801428) Bryzghalov O. … MakaA8owska I. (Acta Biochim. Pol. 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for DNAJB8-AS1 Gene

Sources for DNAJB8-AS1 Gene

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