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Aliases for DNAJB1 Gene

Aliases for DNAJB1 Gene

  • DnaJ Heat Shock Protein Family (Hsp40) Member B1 2 3 5
  • DnaJ (Hsp40) Homolog, Subfamily B, Member 1 2 3
  • Heat Shock 40 KDa Protein 1 3 4
  • DnaJ Protein Homolog 1 3 4
  • Human DnaJ Protein 1 3 4
  • Hsp40 3 4
  • HSPF1 3 4
  • Hdj1 3 4
  • Radial Spoke 16 Homolog B (Chlamydomonas) 2
  • DnaJ Homolog Subfamily B Member 1 3
  • Radial Spoke 16 Homolog B 3
  • Heat Shock Protein 40 4
  • RSPH16B 3
  • DNAJ1 4
  • HDj-1 4
  • Sis1 3

External Ids for DNAJB1 Gene

Previous HGNC Symbols for DNAJB1 Gene

  • HSPF1

Previous GeneCards Identifiers for DNAJB1 Gene

  • GC19M014980
  • GC19M014470
  • GC19M014625
  • GC19M014195

Summaries for DNAJB1 Gene

Entrez Gene Summary for DNAJB1 Gene

  • This gene encodes a member of the DnaJ or Hsp40 (heat shock protein 40 kD) family of proteins. DNAJ family members are characterized by a highly conserved amino acid stretch called the 'J-domain' and function as one of the two major classes of molecular chaperones involved in a wide range of cellular events, such as protein folding and oligomeric protein complex assembly. The encoded protein is a molecular chaperone that stimulates the ATPase activity of Hsp70 heat-shock proteins in order to promote protein folding and prevent misfolded protein aggregation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

GeneCards Summary for DNAJB1 Gene

DNAJB1 (DnaJ Heat Shock Protein Family (Hsp40) Member B1) is a Protein Coding gene. Diseases associated with DNAJB1 include Fibrolamellar Carcinoma and Antenatal Bartter Syndrome. Among its related pathways are CCR5 Pathway in Macrophages and Influenza A. GO annotations related to this gene include unfolded protein binding and ATPase binding. An important paralog of this gene is DNAJB4.

UniProtKB/Swiss-Prot for DNAJB1 Gene

  • Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP. Negatively regulates heat shock-induced HSF1 transcriptional activity during the attenuation and recovery phase period of the heat shock response (PubMed:9499401). Stimulates ATP hydrolysis and the folding of unfolded proteins mediated by HSPA1A/B (in vitro) (PubMed:24318877).

Gene Wiki entry for DNAJB1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAJB1 Gene

Genomics for DNAJB1 Gene

Regulatory Elements for DNAJB1 Gene

Enhancers for DNAJB1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G014512 1.8 FANTOM5 ENCODE dbSUPER 12.9 +11.2 11241 12.0 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 TECR DNAJB1 AKAP8 GIPC1 IL27RA ADGRE5 PKN1 DDX39A PIR54842
GH19G014502 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +24.2 24239 6.8 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B ZNF143 AKAP8 CCDC130 DCAF15 MRI1 DNAJB1 RFX1 ZSWIM4 ENSG00000268189 GIPC1 PKN1
GH19G014525 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +1.6 1579 5.9 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 AKAP8 DNAJB1 TECR GIPC1 OR7C2 PIR54842 GC19P014531
GH19G014354 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.1 +173.7 173721 2.1 HDAC1 HDGF RB1 RAD21 TCF12 ZNF121 EGR1 DEK SMARCA5 CEBPB ADGRE2 ADGRE5 DNAJB1 LINC01842 ZNF333 PKN1 DCAF15 RFX1 DDX39A IL27RA
GH19G014415 1.8 FANTOM5 ENCODE dbSUPER 8.2 +111.8 111848 5.2 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 GLIS1 RCOR2 AKAP8 GIPC1 ADGRE2 DNAJB1 DDX39A DCAF15 PKN1 IL27RA ADGRE5 RFX1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNAJB1 on UCSC Golden Path with GeneCards custom track

Promoters for DNAJB1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107555 70 1801 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143

Genomic Location for DNAJB1 Gene

Chromosome:
19
Start:
14,514,764 bp from pter
End:
14,529,770 bp from pter
Size:
15,007 bases
Orientation:
Minus strand

Genomic View for DNAJB1 Gene

Genes around DNAJB1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAJB1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAJB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAJB1 Gene

Proteins for DNAJB1 Gene

  • Protein details for DNAJB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P25685-DNJB1_HUMAN
    Recommended name:
    DnaJ homolog subfamily B member 1
    Protein Accession:
    P25685
    Secondary Accessions:
    • B4DX52

    Protein attributes for DNAJB1 Gene

    Size:
    340 amino acids
    Molecular mass:
    38044 Da
    Quaternary structure:
    • Interacts with DNAJC3 (PubMed:9920933). Interacts with SRPK1 (PubMed:19240134). Interacts with HSF1 (via transactivation domain); this interaction results in the inhibition of heat shock- and HSF1-induced transcriptional activity during the attenuation and recovery phase period of the heat shock response (PubMed:9499401).
    SequenceCaution:
    • Sequence=CAA44287.1; Type=Frameshift; Positions=11, 28, 81, 136; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for DNAJB1 Gene

    Alternative splice isoforms for DNAJB1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DNAJB1 Gene

Post-translational modifications for DNAJB1 Gene

  • Ubiquitination at isoforms=3 and isoforms=2286
  • Modification sites at PhosphoSitePlus

Antibody Products

  • R&D Systems Antibodies for DNAJB1 (HSP40/DNAJB1)
  • Cell Signaling Technology (CST) Antibodies for DNAJB1 (HSP40)
  • Cloud-Clone Corp. Antibodies for DNAJB1

No data available for DME Specific Peptides for DNAJB1 Gene

Domains & Families for DNAJB1 Gene

Gene Families for DNAJB1 Gene

Protein Domains for DNAJB1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DNAJB1: view

No data available for UniProtKB/Swiss-Prot for DNAJB1 Gene

Function for DNAJB1 Gene

Molecular function for DNAJB1 Gene

UniProtKB/Swiss-Prot Function:
Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP. Negatively regulates heat shock-induced HSF1 transcriptional activity during the attenuation and recovery phase period of the heat shock response (PubMed:9499401). Stimulates ATP hydrolysis and the folding of unfolded proteins mediated by HSPA1A/B (in vitro) (PubMed:24318877).
UniProtKB/Swiss-Prot Induction:
By heat shock.

Gene Ontology (GO) - Molecular Function for DNAJB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001106 RNA polymerase II transcription corepressor activity IDA 9499401
GO:0001671 ATPase activator activity TAS --
GO:0005515 protein binding IPI 9499401
GO:0030544 Hsp70 protein binding IPI 23921388
GO:0045296 cadherin binding IDA 25468996
genes like me logo Genes that share ontologies with DNAJB1: view
genes like me logo Genes that share phenotypes with DNAJB1: view

Animal Models for DNAJB1 Gene

MGI Knock Outs for DNAJB1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for DNAJB1 Gene

Localization for DNAJB1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DNAJB1 Gene

Cytoplasm. Nucleus. Nucleus, nucleolus. Note=Translocates rapidly from the cytoplasm to the nucleus, and especially to the nucleoli, upon heat shock.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNAJB1 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 5
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 1
cytoskeleton 1
lysosome 1

Gene Ontology (GO) - Cellular Components for DNAJB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus IEA --
GO:0005737 cytoplasm IDA 25468996
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with DNAJB1: view

Pathways & Interactions for DNAJB1 Gene

genes like me logo Genes that share pathways with DNAJB1: view

Pathways by source for DNAJB1 Gene

1 GeneGo (Thomson Reuters) pathway for DNAJB1 Gene
1 Qiagen pathway for DNAJB1 Gene

SIGNOR curated interactions for DNAJB1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for DNAJB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding IEA --
GO:0006986 response to unfolded protein TAS 8975727
GO:0032781 positive regulation of ATPase activity IDA 23921388
GO:0051085 chaperone mediated protein folding requiring cofactor IEA --
GO:0070389 chaperone cofactor-dependent protein refolding IDA 18620420
genes like me logo Genes that share ontologies with DNAJB1: view

Drugs & Compounds for DNAJB1 Gene

(2) Drugs for DNAJB1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with DNAJB1: view

Transcripts for DNAJB1 Gene

Unigene Clusters for DNAJB1 Gene

DnaJ (Hsp40) homolog, subfamily B, member 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAJB1 Gene

No ASD Table

Relevant External Links for DNAJB1 Gene

GeneLoc Exon Structure for
DNAJB1
ECgene alternative splicing isoforms for
DNAJB1

Expression for DNAJB1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAJB1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DNAJB1 Gene

This gene is overexpressed in Whole Blood (x5.3), Brain - Cerebellum (x4.6), and Brain - Cerebellar Hemisphere (x4.4).

Protein differential expression in normal tissues from HIPED for DNAJB1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DNAJB1 Gene



Protein tissue co-expression partners for DNAJB1 Gene

NURSA nuclear receptor signaling pathways regulating expression of DNAJB1 Gene:

DNAJB1

SOURCE GeneReport for Unigene cluster for DNAJB1 Gene:

Hs.515210

Evidence on tissue expression from TISSUES for DNAJB1 Gene

  • Nervous system(5)
  • Lung(4.8)
  • Liver(4.6)
  • Intestine(3.5)
  • Kidney(3.2)
  • Pancreas(2.9)
  • Skin(2.9)
  • Eye(2.8)
  • Muscle(2.5)
  • Heart(2.3)
  • Spleen(2.2)
  • Adrenal gland(2.1)
  • Gall bladder(2.1)
  • Blood(2)
genes like me logo Genes that share expression patterns with DNAJB1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAJB1 Gene

Orthologs for DNAJB1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DNAJB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DNAJB1 34 35
  • 98.92 (n)
dog
(Canis familiaris)
Mammalia DNAJB1 34 35
  • 93.92 (n)
cow
(Bos Taurus)
Mammalia DNAJB1 34 35
  • 93.53 (n)
-- 35
  • 80 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Dnajb1 34
  • 92.06 (n)
mouse
(Mus musculus)
Mammalia Dnajb1 34 16 35
  • 90.59 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia DNAJB1 35
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100858808 34
  • 71.08 (n)
lizard
(Anolis carolinensis)
Reptilia DNAJB1 35
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dnajb1 34
  • 67.26 (n)
zebrafish
(Danio rerio)
Actinopterygii dnajb1b 35
  • 66 (a)
OneToMany
dnajb1a 34 35
  • 65.46 (n)
wufd19c10 34
fruit fly
(Drosophila melanogaster)
Insecta DnaJ-1 36 35
  • 52 (a)
CG5001 36 35
  • 48 (a)
CG2887 36 35
  • 38 (a)
worm
(Caenorhabditis elegans)
Secernentea dnj-13 35
  • 54 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAL008W 34
  • 48.89 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D04818g 34
  • 47.44 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SIS1 34
  • 46.31 (n)
rice
(Oryza sativa)
Liliopsida Os01g0239100 34
  • 54.43 (n)
wheat
(Triticum aestivum)
Liliopsida Ta.9199 34
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes psi1 34
  • 51.14 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 51 (a)
OneToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU03732 34
  • 49.39 (n)
Species where no ortholog for DNAJB1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for DNAJB1 Gene

ENSEMBL:
Gene Tree for DNAJB1 (if available)
TreeFam:
Gene Tree for DNAJB1 (if available)

Paralogs for DNAJB1 Gene

Pseudogenes.org Pseudogenes for DNAJB1 Gene

genes like me logo Genes that share paralogs with DNAJB1: view

Variants for DNAJB1 Gene

Sequence variations from dbSNP and Humsavar for DNAJB1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000239745 -- 14,523,143(+) GGAGG(C/T)TGCAG intron-variant
rs1000277920 -- 14,525,491(+) AAGGA(A/G)TGAGC intron-variant
rs1000700558 -- 14,529,351(+) CAAAG(A/G)GACGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000881421 -- 14,526,977(+) GGAGG(C/G)AGGAT intron-variant, upstream-variant-2KB
rs1000932868 -- 14,520,542(+) TGGCC(C/T)ACTCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DNAJB1 Gene

Variant ID Type Subtype PubMed ID
nsv961185 CNV duplication 23825009

Variation tolerance for DNAJB1 Gene

Residual Variation Intolerance Score: 8.29% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.86; 17.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DNAJB1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAJB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNAJB1 Gene

Disorders for DNAJB1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DNAJB1 Gene - From: Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
fibrolamellar carcinoma
  • fibrolamellar hepatocellular carcinoma
antenatal bartter syndrome
  • hyperprostaglandin e syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for DNAJB1

Genetic Association Database (GAD)
DNAJB1
Human Genome Epidemiology (HuGE) Navigator
DNAJB1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNAJB1
genes like me logo Genes that share disorders with DNAJB1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DNAJB1 Gene

Publications for DNAJB1 Gene

  1. Genomic cloning of a human heat shock protein 40 (Hsp40) gene (HSPF1) and its chromosomal localization to 19p13.2. (PMID: 8975727) Hata M. … Ohtsuka K. (Genomics 1996) 2 3 4 22 64
  2. The cellular inhibitor of the PKR protein kinase, P58(IPK), is an influenza virus-activated co-chaperone that modulates heat shock protein 70 activity. (PMID: 9920933) Melville M.W. … Katze M.G. (J. Biol. Chem. 1999) 3 4 22 64
  3. Cloning of a cDNA for heat-shock protein hsp40, a human homologue of bacterial DnaJ. (PMID: 8250930) Ohtsuka K. (Biochem. Biophys. Res. Commun. 1993) 2 3 4 64
  4. Binding of human nucleotide exchange factors to heat shock protein 70 (Hsp70) generates functionally distinct complexes in vitro. (PMID: 24318877) Rauch J.N. … Gestwicki J.E. (J. Biol. Chem. 2014) 3 4 64
  5. Gentamicin inhibits HSP70-assisted protein folding by interfering with substrate recognition. (PMID: 20026329) Yamamoto S. … Itoh H. (FEBS Lett. 2010) 3 22 64

Products for DNAJB1 Gene

Sources for DNAJB1 Gene

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