Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DNAAF4-CCPG1 Gene

Subcategory (RNA class) for DNAAF4-CCPG1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for DNAAF4-CCPG1 Gene

  • DNAAF4-CCPG1 Readthrough (NMD Candidate) 2 3
  • DYX1C1-CCPG1 Readthrough (NMD Candidate) 2 3 5
  • DYX1C1-CCPG1 3 5
  • DYX1C1-CCPG1 Readthrough (Non-Protein Coding) 3

External Ids for DNAAF4-CCPG1 Gene

Previous HGNC Symbols for DNAAF4-CCPG1 Gene

  • DYX1C1-CCPG1

Summaries for DNAAF4-CCPG1 Gene

Entrez Gene Summary for DNAAF4-CCPG1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring dyslexia susceptibility 1 candidate 1 (DYX1C1) and cell cycle progression 1 (CCPG1) genes on chromosome 15. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for DNAAF4-CCPG1 Gene

DNAAF4-CCPG1 (DNAAF4-CCPG1 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAAF4-CCPG1 Gene

Genomics for DNAAF4-CCPG1 Gene

Regulatory Elements for DNAAF4-CCPG1 Gene

Enhancers for DNAAF4-CCPG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G055497 1 ENCODE 0.7 +0.2 150 1.4 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GTF3C2 ZNF143 MXD4 ZNF518A RSL24D1 PYGO1 C15orf65 PIGB DNAAF4 DNAAF4-CCPG1 LOC100420711
GH15G055494 0.2 Ensembl 0.7 +3.7 3683 0.2 RSL24D1 DNAAF4-CCPG1 LOC100420711
GH15G055495 0.2 ENCODE 0.7 +3.4 3447 0.2 RSL24D1 DNAAF4-CCPG1 LOC100420711
GH15G055496 0.2 Ensembl 0.7 +3.1 3084 0.2 RSL24D1 RAB27A DNAAF4-CCPG1 LOC100420711
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DNAAF4-CCPG1 on UCSC Golden Path with GeneCards custom track

Promoters for DNAAF4-CCPG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076830 284 1401 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GTF3C2 ZNF143 MXD4 ZNF518A

Genomic Location for DNAAF4-CCPG1 Gene

Chromosome:
15
Start:
55,355,223 bp from pter
End:
55,498,584 bp from pter
Size:
143,362 bases
Orientation:
Minus strand

Genomic View for DNAAF4-CCPG1 Gene

Genes around DNAAF4-CCPG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAAF4-CCPG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAAF4-CCPG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAAF4-CCPG1 Gene

Proteins for DNAAF4-CCPG1 Gene

Post-translational modifications for DNAAF4-CCPG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAAF4-CCPG1 Gene

Domains & Families for DNAAF4-CCPG1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAAF4-CCPG1 Gene

Function for DNAAF4-CCPG1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAAF4-CCPG1 Gene

Localization for DNAAF4-CCPG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DNAAF4-CCPG1 Gene

Pathways & Interactions for DNAAF4-CCPG1 Gene

SuperPathways for DNAAF4-CCPG1 Gene

No Data Available

Interacting Proteins for DNAAF4-CCPG1 Gene

Gene Ontology (GO) - Biological Process for DNAAF4-CCPG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAAF4-CCPG1 Gene

Transcripts for DNAAF4-CCPG1 Gene

mRNA/cDNA for DNAAF4-CCPG1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DNAAF4-CCPG1 Gene

No ASD Table

Relevant External Links for DNAAF4-CCPG1 Gene

GeneLoc Exon Structure for
DNAAF4-CCPG1
ECgene alternative splicing isoforms for
DNAAF4-CCPG1

Expression for DNAAF4-CCPG1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAAF4-CCPG1 Gene

Orthologs for DNAAF4-CCPG1 Gene

Evolution for DNAAF4-CCPG1 Gene

ENSEMBL:
Gene Tree for DNAAF4-CCPG1 (if available)
TreeFam:
Gene Tree for DNAAF4-CCPG1 (if available)

No data available for Orthologs for DNAAF4-CCPG1 Gene

Paralogs for DNAAF4-CCPG1 Gene

No data available for Paralogs for DNAAF4-CCPG1 Gene

Variants for DNAAF4-CCPG1 Gene

Sequence variations from dbSNP and Humsavar for DNAAF4-CCPG1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs397515621 Pathogenic 55,439,557(-) AGGCA(C/G/T)GAAGA nc-transcript-variant, reference, missense, stop-gained
rs397515622 Pathogenic 55,491,203(-) CACAA(G/T)AGAGA nc-transcript-variant, reference, stop-gained
rs779538333 Pathogenic 55,434,904(+) CCATA(C/T)CTTAG splice-donor-variant
rs748763190 Uncertain significance 55,439,467(+) AACAA(C/T)TTACT intron-variant
rs57914590 Benign 55,491,144(+) AGTGC(A/G/T)TATTT nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for DNAAF4-CCPG1 Gene

Variant ID Type Subtype PubMed ID
dgv1216n106 CNV deletion 24896259
dgv437n67 CNV loss 20364138
dgv4544n54 CNV loss 21841781
dgv4545n54 CNV loss 21841781
dgv4546n54 CNV loss 21841781
dgv4547n54 CNV loss 21841781
esv2663013 CNV deletion 23128226
esv2749724 CNV deletion 23290073
esv2761899 CNV gain+loss 21179565
esv29128 CNV loss 19812545
esv3365892 CNV insertion 20981092
esv3373880 CNV insertion 20981092
esv3390087 CNV insertion 20981092
esv3552487 CNV deletion 23714750
esv3569598 CNV gain 25503493
esv3636557 CNV loss 21293372
esv3636558 CNV loss 21293372
esv3636560 CNV loss 21293372
esv3636562 CNV loss 21293372
esv3636564 CNV loss 21293372
esv3636565 CNV loss 21293372
esv3892697 CNV loss 25118596
esv9731 CNV loss 19470904
nsv1043789 CNV gain 25217958
nsv1113713 CNV deletion 24896259
nsv1542 CNV insertion 18451855
nsv475201 CNV novel sequence insertion 20440878
nsv520799 CNV loss 19592680
nsv569523 CNV gain 21841781
nsv569530 CNV loss 21841781
nsv569539 CNV loss 21841781
nsv817693 CNV loss 17921354
nsv833016 CNV gain 17160897
nsv951964 CNV deletion 24416366
nsv984074 CNV duplication 23825009

Relevant External Links for DNAAF4-CCPG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAAF4-CCPG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAAF4-CCPG1 Gene

Disorders for DNAAF4-CCPG1 Gene

Relevant External Links for DNAAF4-CCPG1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DNAAF4-CCPG1

No disorders were found for DNAAF4-CCPG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAAF4-CCPG1 Gene

Publications for DNAAF4-CCPG1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for DNAAF4-CCPG1 Gene

Sources for DNAAF4-CCPG1 Gene

Content
Loading form....