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Aliases for DLST Gene

Aliases for DLST Gene

  • Dihydrolipoamide S-Succinyltransferase (E2 Component Of 2-Oxo-Glutarate Complex) 2 3
  • EC 2.3.1.61 4 64
  • OGDC-E2 3 4
  • DLTS 3 4
  • E2K 3 4
  • Dihydrolipoyllysine-Residue Succinyltransferase Component Of 2-Oxoglutarate Dehydrogenase Complex, Mitochondrial 3
  • Dihydrolipoamide Succinyltransferase Component Of 2-Oxoglutarate Dehydrogenase Complex 4
  • 2-Oxoglutarate Dehydrogenase Complex Component E2 4
  • EC 2.3.1 64

External Ids for DLST Gene

Previous Symbols for DLST Gene

  • DLTS

Summaries for DLST Gene

Entrez Gene Summary for DLST Gene

  • This gene encodes a mitochondrial protein that belongs to the 2-oxoacid dehydrogenase family. This protein is one of the three components (the E2 component) of the 2-oxoglutarate dehydrogenase complex that catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for DLST Gene

DLST (Dihydrolipoamide S-Succinyltransferase (E2 Component Of 2-Oxo-Glutarate Complex)) is a Protein Coding gene. Diseases associated with DLST include wernicke-korsakoff syndrome and alpha-ketoglutarate dehydrogenase deficiency. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include dihydrolipoyllysine-residue succinyltransferase activity. An important paralog of this gene is DBT.

UniProtKB/Swiss-Prot for DLST Gene

  • The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3)

Gene Wiki entry for DLST Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLST Gene

Genomics for DLST Gene

Genomic Location for DLST Gene

Start:
74,881,891 bp from pter
End:
74,903,747 bp from pter
Size:
21,857 bases
Orientation:
Plus strand

Genomic View for DLST Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DLST Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLST Gene

Proteins for DLST Gene

  • Protein details for DLST Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P36957-ODO2_HUMAN
    Recommended name:
    Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial
    Protein Accession:
    P36957
    Secondary Accessions:
    • B7Z5W8
    • E7ESY5
    • Q7LDY7
    • Q9BQ32

    Protein attributes for DLST Gene

    Size:
    453 amino acids
    Molecular mass:
    48755 Da
    Cofactor:
    Name=(R)-lipoate; Xref=ChEBI:CHEBI:83088; Note=Binds 1 lipoyl cofactor covalently.;
    Quaternary structure:
    • Forms a 24-polypeptide structural core with octahedral symmetry

    Alternative splice isoforms for DLST Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DLST Gene

Proteomics data for DLST Gene at MOPED

Post-translational modifications for DLST Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys203 and Lys217

Other Protein References for DLST Gene

Domains for DLST Gene

UniProtKB/Swiss-Prot:

ODO2_HUMAN
Domain:
  • Contains 1 lipoyl-binding domain.:
    • P36957
Family:
  • Belongs to the 2-oxoacid dehydrogenase family.:
    • P36957
genes like me logo Genes that share domains with DLST: view

No data available for Gene Families for DLST Gene

Function for DLST Gene

Molecular function for DLST Gene

GENATLAS Biochemistry: dihydrolipoamide S-succinyltransferase
UniProtKB/Swiss-Prot CatalyticActivity: Succinyl-CoA + enzyme N(6)-(dihydrolipoyl)lysine = CoA + enzyme N(6)-(S-succinyldihydrolipoyl)lysine
UniProtKB/Swiss-Prot Function: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3)

Enzyme Numbers (IUBMB) for DLST Gene

Gene Ontology (GO) - Molecular Function for DLST Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity IEA --
GO:0016740 transferase activity --
GO:0016746 transferase activity, transferring acyl groups --
genes like me logo Genes that share ontologies with DLST: view
genes like me logo Genes that share phenotypes with DLST: view

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for DLST Gene

Localization for DLST Gene

Subcellular locations from UniProtKB/Swiss-Prot for DLST Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DLST Gene COMPARTMENTS Subcellular localization image for DLST gene
Compartment Confidence
mitochondrion 5
nucleus 4
cytosol 3

Gene Ontology (GO) - Cellular Components for DLST Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005739 mitochondrion --
GO:0005759 mitochondrial matrix TAS --
GO:0016020 membrane IDA 19946888
GO:0045252 oxoglutarate dehydrogenase complex IEA --
genes like me logo Genes that share ontologies with DLST: view

Pathways for DLST Gene

genes like me logo Genes that share pathways with DLST: view

UniProtKB/Swiss-Prot P36957-ODO2_HUMAN

  • Pathway: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 6/6

Gene Ontology (GO) - Biological Process for DLST Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006091 generation of precursor metabolites and energy TAS 8009371
GO:0006099 tricarboxylic acid cycle TAS --
GO:0006554 lysine catabolic process TAS --
GO:0008152 metabolic process --
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine IEA --
genes like me logo Genes that share ontologies with DLST: view

Compounds for DLST Gene

(6) HMDB Compounds for DLST Gene

Compound Synonyms Cas Number PubMed IDs
(S)-Succinyldihydrolipoamide
  • S-Succinyldihydrolipoamide
Not Available
Dihydrolipoamide
  • dihydrolipoamide
3884-47-7
Glutaryl-CoA
  • glutaryl-CoA
103192-48-9
Lipoic acid
  • (+)-alpha-Lipoate
1077-28-7
S-Glutaryldihydrolipoamide
Not Available

(3) Novoseek inferred chemical compound relationships for DLST Gene

Compound -log(P) Hits PubMed IDs
dihydrolipoamide 93.7 11
alpha-ketoglutarate 89.1 16
pyruvate 55.8 2
genes like me logo Genes that share compounds with DLST: view

Transcripts for DLST Gene

Unigene Clusters for DLST Gene

Dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DLST Gene

No ASD Table

Relevant External Links for DLST Gene

GeneLoc Exon Structure for
DLST
ECgene alternative splicing isoforms for
DLST

Expression for DLST Gene

mRNA expression in normal human tissues for DLST Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DLST Gene

SOURCE GeneReport for Unigene cluster for DLST Gene Hs.525459

genes like me logo Genes that share expressions with DLST: view

Orthologs for DLST Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DLST Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DLST 36
  • 99.48 (n)
  • 99.78 (a)
DLST 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DLST 36
  • 91.61 (n)
  • 93.6 (a)
DLST 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DLST 36
  • 92.94 (n)
  • 94.92 (a)
DLST 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dlst 36
  • 88.52 (n)
  • 91.39 (a)
Dlst 16
Dlst 37
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DLST 37
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 55 (a)
OneToMany
-- 37
  • 85 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Dlst 36
  • 88.15 (n)
  • 92.94 (a)
chicken
(Gallus gallus)
Aves DLST 36
  • 75.85 (n)
  • 79.65 (a)
DLST 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DLST 37
  • 72 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia dlst-prov 36
tropical clawed frog
(Silurana tropicalis)
Amphibia dlst 36
  • 70.16 (n)
  • 75.06 (a)
Str.124 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9840 36
zebrafish
(Danio rerio)
Actinopterygii dlst 36
  • 70.05 (n)
  • 71.96 (a)
dlst 37
  • 72 (a)
OneToOne
Dr.3786 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004055 36
  • 66.95 (n)
  • 75.64 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5214 37
  • 55 (a)
OneToOne
CG5214 38
  • 72 (a)
worm
(Caenorhabditis elegans)
Secernentea dlst-1 36
  • 64.1 (n)
  • 70.94 (a)
dlst-1 37
  • 55 (a)
OneToOne
W02F12.5 38
  • 67 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL200W 36
  • 61.16 (n)
  • 61.3 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KGD2 36
  • 57.3 (n)
  • 59.92 (a)
KGD2 37
  • 43 (a)
OneToMany
KGD2 39
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D16522g 36
  • 58.7 (n)
  • 61.3 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7649 36
soybean
(Glycine max)
eudicotyledons Gma.6351 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G55070 36
  • 54.69 (n)
  • 49.5 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.2268 36
corn
(Zea mays)
Liliopsida Zm.1058 36
rice
(Oryza sativa)
Liliopsida Os.8748 36
Os04g0394200 36
  • 64.35 (n)
  • 65.65 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.28698 36
bread mold
(Neurospora crassa)
Ascomycetes NCU02438 36
  • 53.27 (n)
  • 50.61 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes kgd2 36
  • 57.9 (n)
  • 60.34 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.6748 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8110 37
  • 56 (a)
OneToOne
Species with no ortholog for DLST:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for DLST Gene

ENSEMBL:
Gene Tree for DLST (if available)
TreeFam:
Gene Tree for DLST (if available)

Paralogs for DLST Gene

Paralogs for DLST Gene

Pseudogenes.org Pseudogenes for DLST Gene

genes like me logo Genes that share paralogs with DLST: view

Variants for DLST Gene

Sequence variations from dbSNP and Humsavar for DLST Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs20578 -- 74,901,104(+) GATGG(C/T)GGTAC reference, synonymous-codon, nc-transcript-variant
rs709887 -- 74,902,676(+) ACCCC(C/T)GGGGA utr-variant-3-prime, nc-transcript-variant
rs709888 -- 74,902,643(+) TGCTT(C/T)TCCCT utr-variant-3-prime, nc-transcript-variant
rs731165 -- 74,885,852(+) CCCAC(C/T)CTCCA intron-variant
rs731952 -- 74,899,744(+) CTATA(C/T)TTGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DLST Gene

Variant ID Type Subtype PubMed ID
nsv832832 CNV Gain+Loss 17160897

Relevant External Links for DLST Gene

HapMap Linkage Disequilibrium report
DLST

Disorders for DLST Gene

(2) Novoseek inferred disease relationships for DLST Gene

Disease -log(P) Hits PubMed IDs
alzheimers disease 59.6 9
parkinson disease 10.1 3

Relevant External Links for DLST

Genetic Association Database (GAD)
DLST
Human Genome Epidemiology (HuGE) Navigator
DLST
genes like me logo Genes that share disorders with DLST: view

No data available for UniProtKB/Swiss-Prot for DLST Gene

Publications for DLST Gene

  1. Isolation, characterization, and mapping of gene encoding dihydrolipoyl succinyltransferase (E2k) of human alpha-ketoglutarate dehydrogenase complex. (PMID: 8009371) Ali G. … Blass J.P. (Somat. Cell Mol. Genet. 1994) 2 3 23
  2. Lack of replication of association findings in complex disease: an analysis of 15 polymorphisms in prior candidate genes for sporadic Alzheimer's disease. (PMID: 11436125) Prince J.A. … Brookes A.J. (Eur. J. Hum. Genet. 2001) 3 23 49
  3. No association between DLST gene and Alzheimer's disease or Wernicke-Korsakoff syndrome. (PMID: 11445257) Matsushita S. … Higuchi S. (Neurobiol. Aging 2001) 3 23 49
  4. [Association between DLST gene polymorphism and Alzheimer's disease]. (PMID: 11825528) Ma Q. … Yang J. (Zhonghua Yi Xue Za Zhi 2001) 3 23 49
  5. Modulation by DLST of the genetic risk of Alzheimer's disease in a very elderly population. (PMID: 9894876) Sheu K.F. … Blass J.P. (Ann. Neurol. 1999) 3 23

Products for DLST Gene

Sources for DLST Gene

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