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DLST Gene

protein-coding   GIFtS: 63

GC14P074418
dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: DLTS)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
DLTS 2, 3
E2 3
E2K 3
EC 2.3.1.61 3
Descriptions
Dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase complex 3
dihydrolipoamide S-succinyltransferase (E2 component of
2-oxo-glutarate complex) 2
External Ids
HGNC: 29111
Entrez Gene: 17432
UniProtKB: P369573
Ensembl: ENSG000001196897
Search outside databases for aliases for DLST gene

Previous GC identifers: GC14P072875 GC14P069166 GC14P073338

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: ODO2_HUMAN, P36957
Function: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of
2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components:
2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide
dehydrogenase (E3)

Gene Wiki entry for DLST

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the DLST gene  

Entrez Gene cytogenetic band: 14q24.3   Ensembl cytogenetic band:  14q24.3   HGNC cytogenetic band: 14q23.1

DLST Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P074418:     (about GC identifiers)

Start:
74,418,372 bp from pter
End:
74,440,199 bp from pter
Size:
21,828 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000014.7  NT_026437.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ODO2_HUMAN, P36957 (See protein sequence)
Recommended Name: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor  
Size: 453 amino acids; 48729 Da
Cofactor: Binds 1 lipoyl cofactor covalently
Subunit: Forms a 24-polypeptide structural core with octahedral symmetry
Subcellular location: Mitochondrion
Secondary accessions: Q7LDY7 Q9BQ32

REFSEQ proteins: NP_001924.2  

ENSEMBL proteins: 
ENSP00000238671 ENSP00000335465 ENSP00000335304 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (DLST)
Human Recombinant Proteins from Abnova (DLST)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IDA18029348
GO:0005737 cytoplasm IDA18029348
GO:0005739 mitochondrion IEA--
GO:0005759 mitochondrial matrix EXP2188967
GO:0045252 oxoglutarate dehydrogenase complex IEA--
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Antibodies for DLST: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for DLST
Browse R&D Systems for Antibodies
Antibodies from Abcam (DLST), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (DLST)
Novus Biologicals Antibodies for DLST

Assays for DLST: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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4 InterPro domains/families:
 IPR006255 SucB
 IPR000089 Biotin_lipoyl
 IPR003016 2-oxoA_DH_lipoyl-BS
 IPR001078 2-oxoacid_DH_actylTfrase


   GeneDecks  DLST for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P36957

ProtoNet protein and cluster: P36957

3 Blocks protein families:
IPB000089 Biotin/lipoyl attachment
IPB001078 Catalytic domain of components of various dehydrogenase complexes
IPB003016 2-oxo acid dehydrogenase


UniProtKB/Swiss-Prot: ODO2_HUMAN, P36957
Similarity: Belongs to the 2-oxoacid dehydrogenase family
Similarity: Contains 1 lipoyl-binding domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (DLST)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (DLST)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001933

              Applied Biosystems Silencer® siRNAs for DLST

              Sigma-Aldrich siRNA for DLST  
                     Sigma-Aldrich shRNA for DLST  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for DLST
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001933
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001933
                                 untagged cDNA clone in CMV expression vector: NM_001933 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001933

UniProtKB/Swiss-Prot: ODO2_HUMAN, P36957
Function: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of
2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components:
2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide
dehydrogenase (E3)
Catalytic activity: Succinyl-CoA + enzyme N(6)-(dihydrolipoyl)lysine = CoA + enzyme
N(6)-(S-succinyldihydrolipoyl)lysine
Enzyme Number (IUBMB): EC 2.3.1.61 

Genatlas biochemistry entry for DLST:
dihydrolipoamide S-succinyltransferase
1 MGI phenotypic allele for Dlst (no phenotypes)

5 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity IEA--
GO:0005515 protein binding IPI17220478
GO:0008415 acyltransferase activity IEA--
GO:0016740 transferase activity IEA--
GO:0031405 lipoic acid binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

3 Invitrogen iPath™ Online BioAtlas - Pathways for DLST (Maps provided by GeneGo):
 Tryptophan metabolism
 Citric acid cycle (citrate cycle
 Leucine and lysine metabolism

   GeneDecks  DLST for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  DLST  (Your Favorite Gene powered by Ingenuity) 
 Lysine Degradation
 Citrate Cycle

   GeneDecks  DLST for the pathways selected above  
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2 Kegg Pathways  (Kegg details for DLST):
 hsa00020 Citrate cycle (TCA cycle)
 hsa00310 Lysine degradation

   GeneDecks  DLST for the pathways selected above  
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UniProtKB/Swiss-Prot: ODO2_HUMAN, P36957
Pathway: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from
L-lysine: step 6/6


5/68 Interacting proteins for DLST (ENSP000003353043 P369571, 2) via UniProtKB, MINT, and/or STRING (see all 68 )

InteractantInteraction Details
GeneCardExternal ID(s)
NDRG1Q925971EBI-351007, EBI-716486
A2MP010232MINT-4054731
ACTBP607092MINT-4054731
ALPPP051872MINT-4054731
APODP050902MINT-4054731
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3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006091 generation of precursor metabolites and energy TAS8009371
GO:0006099 tricarboxylic acid cycle IEA--
GO:0008152 metabolic process IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for DLST
2 Novoseek chemical compound relationships for DLST gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
dihydrolipoamide 94.00 12 15075342 (2), 12652908 (1), 8619544 (1), 9450778 (1) (see all 10)
pyruvate 57.04 2 15075342 (2)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (DLST)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (DLST)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001933

              Sigma-Aldrich siRNA for DLST  
                     Sigma-Aldrich shRNA for DLST  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001933  

REFSEQ mRNAs for DLST gene: 

NM_001933.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001933  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001933
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_001933
                                 untagged cDNA clone in CMV expression vector: NM_001933 

Additional cDNA sequence: 

AK289414.1 AK299505.1 AK300396.1 AK316463.1 BC000302.2 BC001922.1 BC002735.2 BX248276.1 
BX248764.1 BX248774.1 CR456727.1 CR600036.1 D16373.1 D17297.1 L37418.1 

18 DOTS entries:

DT.453765  DT.92439236  DT.75109878  DT.92439234  DT.100813975  DT.100813973  DT.91718816  DT.92014352 
DT.99958124  DT.100761902  DT.100813977  DT.120771811  DT.75200367  DT.91924663  DT.92439235  DT.97790453 
DT.97845678  DT.100813969 

24/238 AceView cDNA sequences (see all 238 ):

AU133381 AI738526 AU133426 BM929953 AI768855 CK725012 AU131128 BX248764 
AI805200 BF219729 CD724051 BM468606 BP341159 AI685838 BE671035 BU623022 
BX248774 AI335698 AA291301 AW150246 BF056135 BX395796 BG057758 AL554351 

highest scoring ESTs for DLST:

AW004933 AA088713 AA101666 AA101667 AA236650 AA262060 AA343667 AA443359 AA454025 AA683363 

Unigene Cluster for DLST:

Dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
Hs.525459  [show with all ESTs]
Unigene Representative Sequence: NM_001933


GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations:
ENST00000238671  ENST00000334212  ENST00000334220  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

DLST expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for DLST

1 / 2 / 3

4 probe-sets matching DLST gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
33258_g_at2, 3 U95-A 2 1.00 0.53 0.97 0.92 D26535 0.20 0.50 0.38 1

45545_at2, 3 U95-B 2 1.00 0.50 0.94 1.08 AW004933 1.00 0.90 0.95 1

215210_s_at2 U133-A 2 1.00 0.50 -- -- -- -- -- -- --

215210_s_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --
GeneDecks  DLST for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GCTTTGTATC

SOURCE GeneReport for Unigene cluster: Hs.525459

Expression variation in blood from EXPOLDB for DLST

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for DLST gene from 5/28 species (see all 28 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
DLST1   -- dihydrolipoamide S-succinyltransferase (E2 component more 88.01(n)
89.59(a)
480388  XM_537510.2  XP_537510.2 
chimpanzee
(Pan troglodytes)
DLST1   -- dihydrolipoamide S-succinyltransferase (E2 component more 99.48(n)
99.78(a)
453039  XM_510068.2  XP_510068.2 
cow
(Bos taurus)
DLST1   -- dihydrolipoamide S-succinyltransferase (E2 component more 91.83(n)
94.04(a)
506888  NM_001075282.1  NP_001068750.1 
rat
(Rattus norvegicus)
Dlst1   -- dihydrolipoamide S-succinyltransferase (E2 component more 88.15(n)
92.94(a)
299201  NM_001006981.1  NP_001006982.1 
mouse
(Mus musculus)
Dlst1, 5 125
dihydrolipoamide S-succinyltransferase (E2 component more1, 5 89.31(n)1
92.7(a)1
789201  NM_030225.31  NP_084501.11 
 AI8499045  AK0054775  (see all 53)
About this table        Species with no ortholog for DLST

ENSEMBL Gene Tree for DLST
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/161 NCBI SNPs in DLST are shown (see all 161 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 71)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 14 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs100833861,2
A,C,F,H74417338(+) TGGTTC/AATTCA 1 -- ng514Minor allele frequency- A:0.46EU EA WA 412
--
rs133911,2
A,C,F74439876(+) TGAAAC/TGGATG 1 -- ut31 ese32Minor allele frequency- T:0.33MN 372
--
rs7098871,2
A,C,F74439132(+) ACCCCC/TGGGGA 1 -- ut31 ese35Minor allele frequency- T:0.47EA NA MN 396
--
rs80144991,2
A,C74439886(+) GAGGTC/AATTTC 1 -- ut311Minor allele frequency- A:0.00MN 184
rs116233421,2
C,F74417690(+) TTCCAA/CAATGC 1 -- ng514Minor allele frequency- C:0.28NA EA 362
--
rs7098881,2
A,C74439099(+) TGCTTC/TTCCCT 1 -- ut31 ese35Minor allele frequency- T:0.08EA NA MN 336
--
rs32074451,2
F74438863(+) GTCCCA/GGGTTA 1 -- ut31 ese31Minor allele frequency- G:0.28MN 184
rs20705971,2
C74439693(+) CTCTAA/GACTGA 1 -- ut31 ese30--------
--
rs37597411,2
C74416794(-) ggtagC/Tgaatg 1 -- ng510--------
--
rs32074481,2
F74438944(+) CAGGTC/TTTTTC 1 -- ut311Minor allele frequency- T:0.20MN 184
About this table

HapMap Linkage Disequilibrium images for DLST (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 126063

2 Novoseek disease relationships for DLST gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
alzheimers disease 59.50 10 11825528 (2), 7974008 (1), 9894876 (1), 8584231 (1) (see all 8)
parkinson disease 12.50 3 9450778 (2), 10676873 (1)
About this table

Genetic Association Database: DLST
Human Genome Epidemiology Navigator: DLST (4 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/40 PubMed articles for DLST gene (see all 40 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 1743 HGNC: 2911 AceView: DLST Ensembl:ENSG00000119689 euGenes: HUgn1743
ECgene: DLST H-InvDB: DLST
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for DLST:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for DLST-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for DLST Antibodies for DLST
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for DLST Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

 Recombinant Proteins (DLST)
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 Custom Service for Rabbit Pab from Full-length Protein
  
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 Recombinant Proteins
(DLST)
 Antibodies (DLST)
 Search OriGene for DLST
 Search Tocris compounds for DLST




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for DLST

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