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Aliases for DLGAP1-AS4 Gene

Subcategory (RNA class) for DLGAP1-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DLGAP1-AS4 Gene

  • DLGAP1 Antisense RNA 4 2 3 5
  • DLGAP1 Antisense RNA 4 (Non-Protein Coding) 2

External Ids for DLGAP1-AS4 Gene

Previous GeneCards Identifiers for DLGAP1-AS4 Gene

  • GC00U934039

Summaries for DLGAP1-AS4 Gene

GeneCards Summary for DLGAP1-AS4 Gene

DLGAP1-AS4 (DLGAP1 Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLGAP1-AS4 Gene

Genomics for DLGAP1-AS4 Gene

Regulatory Elements for DLGAP1-AS4 Gene

Enhancers for DLGAP1-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F003965 1.2 Ensembl ENCODE 0.4 +5.2 5157 3.0 SIN3A FEZF1 BRCA1 GLIS2 ZNF548 DEK SP3 YY2 TSHZ1 ZNF488 DLGAP1-AS4 GAPDHP66
GH18F003963 0.3 FANTOM5 0.8 +1.1 1052 0.4 DLGAP1 DLGAP1-AS4 GAPDHP66
GH18F003972 0.6 ENCODE 0.4 +10.5 10453 0.2 CTCF POLR2A ZNF792 TCF7L2 DEK GAPDHP66 DLGAP1-AS4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DLGAP1-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for DLGAP1-AS4 Gene

Chromosome:
18
Start:
3,962,353 bp from pter
End:
4,013,943 bp from pter
Size:
51,591 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS4 Gene

Genes around DLGAP1-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS4 Gene

Proteins for DLGAP1-AS4 Gene

Post-translational modifications for DLGAP1-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS4 Gene

Domains & Families for DLGAP1-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLGAP1-AS4 Gene

Function for DLGAP1-AS4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS4 Gene

Localization for DLGAP1-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DLGAP1-AS4 Gene

Pathways & Interactions for DLGAP1-AS4 Gene

SuperPathways for DLGAP1-AS4 Gene

No Data Available

Interacting Proteins for DLGAP1-AS4 Gene

Gene Ontology (GO) - Biological Process for DLGAP1-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP1-AS4 Gene

Transcripts for DLGAP1-AS4 Gene

mRNA/cDNA for DLGAP1-AS4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS4 Gene

No ASD Table

Relevant External Links for DLGAP1-AS4 Gene

GeneLoc Exon Structure for
DLGAP1-AS4
ECgene alternative splicing isoforms for
DLGAP1-AS4

Expression for DLGAP1-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS4 Gene

This gene is overexpressed in Brain - Cortex (x16.1), Brain - Frontal Cortex (BA9) (x15.1), and Brain - Anterior cingulate cortex (BA24) (x11.9).
genes like me logo Genes that share expression patterns with DLGAP1-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DLGAP1-AS4 Gene

Orthologs for DLGAP1-AS4 Gene

Evolution for DLGAP1-AS4 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS4 (if available)
TreeFam:
Gene Tree for DLGAP1-AS4 (if available)

No data available for Orthologs for DLGAP1-AS4 Gene

Paralogs for DLGAP1-AS4 Gene

No data available for Paralogs for DLGAP1-AS4 Gene

Variants for DLGAP1-AS4 Gene

Sequence variations from dbSNP and Humsavar for DLGAP1-AS4 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000929 -- 4,005,122(-) GCGCT(A/G)AGAAC intron-variant, utr-variant-5-prime
rs10083978 -- 3,974,112(+) ACTCC(C/G)TCGCC intron-variant
rs1025862 -- 3,996,507(-) caatt(A/C)aaatg intron-variant
rs10350 -- 3,997,407(-) GGTGA(C/G)GGGGA intron-variant
rs1036818 -- 3,983,075(-) GAACC(A/G)CCCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS4 Gene

Variant ID Type Subtype PubMed ID
nsv9603 CNV loss 18304495
nsv960246 CNV duplication 23825009
nsv9601 CNV gain 18304495
nsv954941 CNV deletion 24416366
nsv131065 CNV deletion 16902084
nsv1146733 CNV deletion 26484159
nsv1134691 CNV deletion 24896259
nsv1066089 CNV loss 25217958
esv7766 CNV loss 19470904
esv4964 CNV loss 18987735
esv3893065 CNV gain 25118596
esv3641612 CNV loss 21293372
esv3641611 CNV gain 21293372
esv3554973 CNV deletion 23714750
esv3144901 CNV deletion 24192839
esv2758710 CNV gain 17122850
esv2716699 CNV deletion 23290073
esv2662794 CNV deletion 23128226
esv2658035 CNV deletion 23128226
esv2577067 CNV deletion 19546169
esv2432132 CNV deletion 19546169
esv2282661 CNV deletion 18987734
esv1608190 CNV insertion 17803354
esv1587054 CNV deletion 17803354
dgv184n21 CNV gain 19592680
dgv134e55 CNV gain 17911159

Relevant External Links for DLGAP1-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS4 Gene

Disorders for DLGAP1-AS4 Gene

Relevant External Links for DLGAP1-AS4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DLGAP1-AS4

No disorders were found for DLGAP1-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS4 Gene

Publications for DLGAP1-AS4 Gene

No publications were found for DLGAP1-AS4 Gene.

Products for DLGAP1-AS4 Gene

Sources for DLGAP1-AS4 Gene

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