Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DLGAP1-AS3 Gene

Subcategory (RNA class) for DLGAP1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DLGAP1-AS3 Gene

  • DLGAP1 Antisense RNA 3 2 3 5
  • DLGAP1 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for DLGAP1-AS3 Gene

Previous GeneCards Identifiers for DLGAP1-AS3 Gene

  • GC18U900703

Summaries for DLGAP1-AS3 Gene

GeneCards Summary for DLGAP1-AS3 Gene

DLGAP1-AS3 (DLGAP1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLGAP1-AS3 Gene

Genomics for DLGAP1-AS3 Gene

Regulatory Elements for DLGAP1-AS3 Gene

Enhancers for DLGAP1-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F003877 0.8 Ensembl 0.8 +0.1 121 1.4 CEBPB MYC DLGAP1-AS3 MIR6718
GH18F003872 1.3 Ensembl ENCODE 0.4 -5.4 -5369 0.8 MTA2 IKZF1 TBX21 ZBTB40 SPI1 DLGAP1-AS3 GC18M003855
GH18F003869 0.2 ENCODE 0.4 -8.2 -8155 0.1 CTCF ZNF654 ESRRA SMC3 REST ZBTB40 RAD21 DLGAP1-AS3 GC18M003855
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DLGAP1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for DLGAP1-AS3 Gene

Chromosome:
18
Start:
3,878,180 bp from pter
End:
3,897,069 bp from pter
Size:
18,890 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS3 Gene

Genes around DLGAP1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS3 Gene

Proteins for DLGAP1-AS3 Gene

Post-translational modifications for DLGAP1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS3 Gene

Domains & Families for DLGAP1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLGAP1-AS3 Gene

Function for DLGAP1-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS3 Gene

Localization for DLGAP1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DLGAP1-AS3 Gene

Pathways & Interactions for DLGAP1-AS3 Gene

SuperPathways for DLGAP1-AS3 Gene

No Data Available

Interacting Proteins for DLGAP1-AS3 Gene

Gene Ontology (GO) - Biological Process for DLGAP1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP1-AS3 Gene

Transcripts for DLGAP1-AS3 Gene

mRNA/cDNA for DLGAP1-AS3 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DLGAP1-AS3 Gene

DLGAP1 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS3 Gene

No ASD Table

Relevant External Links for DLGAP1-AS3 Gene

GeneLoc Exon Structure for
DLGAP1-AS3
ECgene alternative splicing isoforms for
DLGAP1-AS3

Expression for DLGAP1-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS3 Gene

This gene is overexpressed in Brain - Cortex (x12.5), Brain - Frontal Cortex (BA9) (x10.3), Testis (x5.9), and Brain - Anterior cingulate cortex (BA24) (x5.7).

SOURCE GeneReport for Unigene cluster for DLGAP1-AS3 Gene:

Hs.627208
genes like me logo Genes that share expression patterns with DLGAP1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DLGAP1-AS3 Gene

Orthologs for DLGAP1-AS3 Gene

Evolution for DLGAP1-AS3 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS3 (if available)
TreeFam:
Gene Tree for DLGAP1-AS3 (if available)

No data available for Orthologs for DLGAP1-AS3 Gene

Paralogs for DLGAP1-AS3 Gene

No data available for Paralogs for DLGAP1-AS3 Gene

Variants for DLGAP1-AS3 Gene

Sequence variations from dbSNP and Humsavar for DLGAP1-AS3 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs11081074 -- 3,880,307(+) gcctc(C/G)cgagt intron-variant
rs111230603 -- 3,889,426(+) ATATA(C/T)ATATA intron-variant
rs111273447 -- 3,880,744(+) TTGAG(A/G)CCAGC intron-variant
rs111493303 -- 3,886,697(+) GTTAT(A/G)ACATA intron-variant
rs111965129 -- 3,882,527(+) GTCTC(-/AA)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv134e55 CNV gain 17911159
dgv184n21 CNV gain 19592680
esv2758710 CNV gain 17122850
esv3582947 CNV loss 25503493
nsv2191 CNV deletion 18451855
nsv833582 CNV loss 17160897

Relevant External Links for DLGAP1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS3 Gene

Disorders for DLGAP1-AS3 Gene

Relevant External Links for DLGAP1-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DLGAP1-AS3

No disorders were found for DLGAP1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS3 Gene

Publications for DLGAP1-AS3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for DLGAP1-AS3 Gene

Sources for DLGAP1-AS3 Gene

Content
Loading form....