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Aliases for DLGAP1-AS2 Gene

Subcategory (RNA class) for DLGAP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DLGAP1-AS2 Gene

  • DLGAP1 Antisense RNA 2 2 3 5
  • DLGAP1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for DLGAP1-AS2 Gene

Summaries for DLGAP1-AS2 Gene

GeneCards Summary for DLGAP1-AS2 Gene

DLGAP1-AS2 (DLGAP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLGAP1-AS2 Gene

Genomics for DLGAP1-AS2 Gene

Regulatory Elements for DLGAP1-AS2 Gene

Enhancers for DLGAP1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F003601 1.7 FANTOM5 Ensembl ENCODE 23.9 +4.0 3961 11.6 PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 CBX5 ZNF207 DLGAP1-AS2 CBX3P2 MYL12B DLGAP1-AS1 LOC101927044 DLGAP1 LOC105371967
GH18F003591 1.6 FANTOM5 ENCODE 19 -7.0 -7004 9.2 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 YY1 ZNF143 FOS DLGAP1-AS2 TGIF1 DLGAP1-AS1 CBX3P2 MYL12B
GH18F002633 1.5 FANTOM5 Ensembl ENCODE 5.3 -964.3 -964336 9.9 TBP TBL1XR1 BMI1 RAD21 ZBTB40 ZNF766 CBX5 CREM CBFB CEBPB METTL4 EMILIN2 NDC80 SMCHD1 DLGAP1-AS2 RNU6-340P GC18M002649 ENSG00000202224
GH18F003615 1.9 FANTOM5 Ensembl ENCODE 0.3 +18.5 18477 12.7 MLX CREB3L1 DMAP1 YBX1 YY1 ZNF263 NFYC MEF2D SSRP1 GLIS1 TGIF1 MYL12A MYL12B DLGAP1-AS1 RPL21P127 DLGAP1-AS2 LOC105371967
GH18F003647 1.7 FANTOM5 Ensembl ENCODE 0.2 +49.4 49430 8.9 SIN3A FOS KLF13 SP3 JUNB SMARCB1 KAT8 MEF2D RCOR2 HMBOX1 DLGAP1-AS1 LOC105371967 DLGAP1-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for DLGAP1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000521492 1500 4201 PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 CBX5 ZNF207

Genomic Location for DLGAP1-AS2 Gene

Chromosome:
18
Start:
3,603,000 bp from pter
End:
3,610,089 bp from pter
Size:
7,090 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS2 Gene

Genes around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS2 Gene

Proteins for DLGAP1-AS2 Gene

Post-translational modifications for DLGAP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS2 Gene

Domains & Families for DLGAP1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLGAP1-AS2 Gene

Function for DLGAP1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS2 Gene

Localization for DLGAP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DLGAP1-AS2 Gene

Pathways & Interactions for DLGAP1-AS2 Gene

SuperPathways for DLGAP1-AS2 Gene

No Data Available

Interacting Proteins for DLGAP1-AS2 Gene

Gene Ontology (GO) - Biological Process for DLGAP1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP1-AS2 Gene

Transcripts for DLGAP1-AS2 Gene

mRNA/cDNA for DLGAP1-AS2 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DLGAP1-AS2 Gene

DLGAP1 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS2 Gene

No ASD Table

Relevant External Links for DLGAP1-AS2 Gene

GeneLoc Exon Structure for
DLGAP1-AS2
ECgene alternative splicing isoforms for
DLGAP1-AS2

Expression for DLGAP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS2 Gene

SOURCE GeneReport for Unigene cluster for DLGAP1-AS2 Gene:

Hs.659053
genes like me logo Genes that share expression patterns with DLGAP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DLGAP1-AS2 Gene

Orthologs for DLGAP1-AS2 Gene

Evolution for DLGAP1-AS2 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS2 (if available)
TreeFam:
Gene Tree for DLGAP1-AS2 (if available)

No data available for Orthologs for DLGAP1-AS2 Gene

Paralogs for DLGAP1-AS2 Gene

No data available for Paralogs for DLGAP1-AS2 Gene

Variants for DLGAP1-AS2 Gene

Sequence variations from dbSNP and Humsavar for DLGAP1-AS2 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs10609683 -- 3,604,457(+) ACACG(-/CA)CACAC intron-variant
rs111251732 -- 3,606,560(+) AAAGT(A/G)TAGTA intron-variant, nc-transcript-variant
rs111348161 -- 3,607,468(+) TTTTT(-/T)GAAGG intron-variant
rs111381349 -- 3,609,919(+) TGGGC(A/G)TGGTG intron-variant, nc-transcript-variant
rs111723224 -- 3,608,190(+) GGTGG(C/T)GCATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2490559 CNV insertion 19546169
dgv184n21 CNV gain 19592680

Relevant External Links for DLGAP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS2 Gene

Disorders for DLGAP1-AS2 Gene

Relevant External Links for DLGAP1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DLGAP1-AS2

No disorders were found for DLGAP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS2 Gene

Publications for DLGAP1-AS2 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for DLGAP1-AS2 Gene

Sources for DLGAP1-AS2 Gene

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