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Aliases for DLG5-AS1 Gene

Subcategory (RNA class) for DLG5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DLG5-AS1 Gene

  • DLG5 Antisense RNA 1 2 3 5

External Ids for DLG5-AS1 Gene

Previous GeneCards Identifiers for DLG5-AS1 Gene

  • GC10P080469
  • GC10P080754
  • GC10P081182

Summaries for DLG5-AS1 Gene

GeneCards Summary for DLG5-AS1 Gene

DLG5-AS1 (DLG5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLG5-AS1 Gene

Genomics for DLG5-AS1 Gene

Regulatory Elements for DLG5-AS1 Gene

Enhancers for DLG5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F077885 1.5 FANTOM5 Ensembl ENCODE 22.4 -37.8 -37815 6.8 ATF1 PKNOX1 ZFP64 ARID4B SIN3A GLI4 ZNF48 ZNF548 ZNF263 SP5 DLG5 ENSG00000228748 DLG5-AS1 RN7SL284P ENSG00000204049 LOC399783 POLR3A RPS24 LOC101929347 LOC100131132
GH10F077835 1.6 FANTOM5 Ensembl ENCODE 11.1 -89.5 -89528 4.5 HDGF PKNOX1 ATF1 ARNT WRNIP1 GLIS2 ZNF143 JUNB TBX21 SMARCA4 DLG5 ENSG00000204049 RN7SL284P DLG5-AS1 PIR49876
GH10F077586 1.7 FANTOM5 Ensembl ENCODE 10.1 -339.3 -339259 2.8 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 LOC399783 RNU6-1266P KCNMA1-AS3 KCNMA1-AS2 DLG5-AS1 KCNMA1 RNA5SP321
GH10F077842 1.3 Ensembl ENCODE 11.1 -80.3 -80310 7.8 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 DLG5 ENSG00000204049 RN7SL284P DLG5-AS1 PIR49876
GH10F077897 1.1 Ensembl ENCODE 12.7 -27.9 -27928 2.3 KLF1 ZIC2 ZFHX2 GLIS2 ZNF366 POLR2A GATA2 PATZ1 PRDM10 ZNF600 DLG5 DLG5-AS1 ENSG00000204049 LOC101929347 RN7SL284P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DLG5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DLG5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000357703 -112 2201 TBP ZNF76 SIN3A ZNF2 RAD21 YY1 ZNF121 GLIS2 ELK1 ZNF143

Genomic Location for DLG5-AS1 Gene

Chromosome:
10
Start:
77,926,812 bp from pter
End:
77,929,825 bp from pter
Size:
3,014 bases
Orientation:
Plus strand

Genomic View for DLG5-AS1 Gene

Genes around DLG5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLG5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLG5-AS1 Gene

Proteins for DLG5-AS1 Gene

Post-translational modifications for DLG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLG5-AS1 Gene

Domains & Families for DLG5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLG5-AS1 Gene

Function for DLG5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLG5-AS1 Gene

Localization for DLG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DLG5-AS1 Gene

Pathways & Interactions for DLG5-AS1 Gene

SuperPathways for DLG5-AS1 Gene

No Data Available

Interacting Proteins for DLG5-AS1 Gene

Gene Ontology (GO) - Biological Process for DLG5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLG5-AS1 Gene

Transcripts for DLG5-AS1 Gene

mRNA/cDNA for DLG5-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DLG5-AS1 Gene

DLG5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DLG5-AS1 Gene

No ASD Table

Relevant External Links for DLG5-AS1 Gene

GeneLoc Exon Structure for
DLG5-AS1
ECgene alternative splicing isoforms for
DLG5-AS1

Expression for DLG5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLG5-AS1 Gene

SOURCE GeneReport for Unigene cluster for DLG5-AS1 Gene:

Hs.547908
genes like me logo Genes that share expression patterns with DLG5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DLG5-AS1 Gene

Orthologs for DLG5-AS1 Gene

Evolution for DLG5-AS1 Gene

ENSEMBL:
Gene Tree for DLG5-AS1 (if available)
TreeFam:
Gene Tree for DLG5-AS1 (if available)

No data available for Orthologs for DLG5-AS1 Gene

Paralogs for DLG5-AS1 Gene

No data available for Paralogs for DLG5-AS1 Gene

Variants for DLG5-AS1 Gene

Sequence variations from dbSNP and Humsavar for DLG5-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs111506058 -- 77,927,223(+) CGCCG(G/T)CTGGT nc-transcript-variant, upstream-variant-2KB
rs112112684 -- 77,930,282(+) TCACC(A/G)CTTGG downstream-variant-500B
rs112128402 -- 77,925,442(+) CCGCC(A/G)GTATC intron-variant, upstream-variant-2KB
rs112213408 -- 77,925,438(+) ACTCC(C/G)GCCAG intron-variant, upstream-variant-2KB
rs112855167 -- 77,925,672(+) CCAGG(C/G)AGGCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DLG5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv551557 CNV loss 21841781
nsv1126261 CNV deletion 24896259
esv27942 CNV loss 19812545
dgv1272n54 CNV gain 21841781
dgv1271n54 CNV gain 21841781

Relevant External Links for DLG5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLG5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLG5-AS1 Gene

Disorders for DLG5-AS1 Gene

Relevant External Links for DLG5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DLG5-AS1

No disorders were found for DLG5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLG5-AS1 Gene

Publications for DLG5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for DLG5-AS1 Gene

Sources for DLG5-AS1 Gene

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