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DLEU2 Gene

RNA gene   GIFtS: 36
GCID: GC13M050558

Deleted In Lymphocytic Leukemia 2 (Non-Protein Coding)

(Previous names: ret finger protein 2 opposite strand, deleted in lymphocytic...)
(Previous symbols: DLB2, BCMSUN, RFP2OS)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 10.2

Aliases
Deleted In Lymphocytic Leukemia 2 (Non-Protein Coding)1 2     Non-Protein Coding RNA 221
BCMSUN1 2 5     Ret Finger Protein 2 Opposite Strand1
DLB21 2     1B42
RFP2OS1 2     LINC000222
LEU22 5     MIR15AHG2
Deleted In Lymphocytic Leukemia, 21     NCRNA000222
Long Intergenic Non-Protein Coding RNA 221     TRIM13OS2
Mir-15a-16-1 Cluster Host Gene (Non-Protein Coding)1     

External Ids:    HGNC: 137481   Entrez Gene: 88472   Ensembl: ENSG000002316077   OMIM: 6057665   
ORGUL members:    fRNAdb10:FR269952 FR143866 FR300064 FR247099 FR063331      
H-InvDB12:HIT000066122 HIT000422024 HIT000066122    
NCBI13:AY455757 AF279660 AF075100    
NONCODE14:n345701 n325727 n382032 n377912 n382036 see all 19    
RNAdb15:EVF35869 EVF35868 EVF35866 LIT3420 LIT3419 see all 6    

Export aliases for DLEU2 gene to outside databases

Previous GC identifers: GC13M048617 GC13M044605 GC13M049554 GC13M048415 GC13M049515 GC13M031351


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for DLEU2 Gene:
DLEU2 (deleted in lymphocytic leukemia 2 (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with DLEU2 include b-cell chronic lymphocytic leukemia, and chronic lymphocytic leukemia.

Gene Wiki entry for DLEU2 Gene

fRNAdb sequence ontologies for DLEU2 - the ORGUL cluster for this gene includes several descriptions:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.
antisense_RNA - Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for DLEU2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000013.11  NC_018924.2  NT_024524.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the DLEU2 gene promoter:
         C/EBPbeta   Tal-1   Sp1   p300   RelA   E47   Evi-1   SRY   POU2F1   POU2F1a   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DLEU2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.3   Ensembl cytogenetic band:  13q14.2   HGNC cytogenetic band: 13q14

DLEU2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DLEU2 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13M050558:  view genomic region     (about GC identifiers)

Start:
50,556,688 bp from pter      End:
50,699,856 bp from pter
Size:
143,169 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for DLEU2

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
LNCRNA: Long non-coding RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Phenotypes:
     2 GenomeRNAi human phenotypes for DLEU2:
 Increased gamma-H2AX phosphory  Synthetic lethal with Ras 

Animal Models:
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miRTarBase miRNAs that target DLEU2:
hsa-mir-193b-3p (MIRT016296)

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for DLEU2

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for DLEU2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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4 fRNAdb Secondary structures:


Unigene Cluster for DLEU2:

Deleted in lymphocytic leukemia 2 (non-protein coding)
Hs.547964  [show with all ESTs]
Unigene Representative Sequence: AY455757
8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000425586(processed_transcript) ENST00000458725(processed_transcript) ENST00000433070(processed_transcript) ENST00000443587(processed_transcript) ENST00000421758(processed_transcript)
ENST00000449579(processed_transcript) ENST00000607334(processed_transcript) ENST00000235290(processed_transcript)
miRNA
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Additional mRNA sequence: 

AF075100.1 AF264787.1 AF380424.1 AF529010.1 AY455757.1 BC006995.1 BC017819.1 BC022282.1 
BC022349.1 BC026275.1 BC030971.1 BC033120.1 BC038090.1 BC055417.1 BC070292.1 NR_002612.1 
Y15228.1 

Selected DOTS entries (see all 27):

DT.95368067  DT.211811  DT.429069  DT.95341736  DT.95368065  DT.100778125  DT.92036879  DT.101984533 
DT.102801  DT.120774727  DT.423924  DT.208337  DT.92427427  DT.306142  DT.40194635  DT.97808131 
DT.120774777  DT.120774942  DT.91713133  DT.92427428  DT.95139977  DT.97812697  DT.120774813  DT.40235848 

Selected AceView cDNA sequences (see all 113):

AI086232 AA868558 CB120473 BQ185483 BC070292 H57396 AF075100 BF941924 
CR625878 AA867999 N25204 BC055417 BC006995 BM788401 BX090395 BM833794 
AL698766 BX100035 BC030971 BM272409 BM667166 BC022282 BC038090 H48685 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for DLEU2:RNAdb

DLEU2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CATTCTTTTT
DLEU2 Expression
About this image

DLEU2 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.547964
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DLEU2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for DLEU2 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Dleu25 deleted in lymphocytic leukemia, 2   --   14 (33.16 cM) 61602839 


ENSEMBL Gene Tree for DLEU2 (if available)
TreeFam Gene Tree for DLEU2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for DLEU2 (see all 1252)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 13 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs359088471,2
C--31434628(+) TTTTT-/TGAGAT 1 -- int11Minor allele frequency- T:0.00NA 2
rs1846688111,2
--50556270(+) ACCTGC/TAGGAA 1 -- ds50010--------
rs1404705871,2
C--50556413(+) AGACAA/GAAACA 1 -- ds50010--------
rs1877893461,2
--50556426(+) AAATCA/GTGGTG 1 -- ds50010--------
rs1910928031,2
--50556590(+) ACTAGA/GAGAGA 1 -- ds50010--------
rs1845420331,2
--50556771(+) GTCAAA/CCAGTA 1 -- nc-transcript-variant0--------
rs1504763471,2
--50556872(+) TTTTTC/TCCCTC 1 -- nc-transcript-variant0--------
rs1893143691,2
--50556874(+) TTTTCC/TCTCAA 1 -- nc-transcript-variant0--------
rs1812190871,2
--50557051(+) TAAACA/TATGCA 1 -- nc-transcript-variant0--------
rs128656491,2
H--50557065(+) AAAAGG/CCAAAG 1 -- nc-transcript-variant4Minor allele frequency- C:0.00NS EA 400

HapMap Linkage Disequilibrium report for DLEU2 (50556688 - 50699856 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for DLEU2 (see all 11):    About this table    
Variant IDTypeSubtypePubMed ID
esv1970441CNV Deletion18987734
esv2747405CNV Deletion23290073
esv2747402CNV Deletion23290073
esv2085992CNV Deletion18987734
esv2747404CNV Deletion23290073
esv2661834CNV Deletion23128226
esv2747403CNV Deletion23290073
esv2580955CNV Deletion19546169
esv2666533CNV Deletion23128226
nsv64412CNV Loss16902084

Site Specific Mutation Identification with PCR Assays
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DNA2.0 Custom Variant and Variant Library Synthesis for DLEU2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605766OMIM information: 605661 607947    
5 diseases for DLEU2:    
About MalaCards
b-cell chronic lymphocytic leukemia    chronic lymphocytic leukemia    mantle cell lymphoma    leukemia
bipolar disorder


DLEU2 for disorders           About GeneDecksing

Genetic Association Database (GAD): DLEU2
Human Genome Epidemiology (HuGE) Navigator: DLEU2 (3 documents)

Export disorders for DLEU2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for DLEU2 gene, integrated from 10 sources (see all 18):
(articles sorted by number of sources associating them with DLEU2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. BCMSUN, a candidate gene for B-cell chronic lymphocytic leukemia and mantle-cell lymphoma, has an independently expressed homolog on 1p22-p31, BCMSUN-like. (PubMed id 11072235)1, 3, 9 Mertens D....Lichter P. (Int. J. Cancer 2000)
  2. Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia. (PubMed id 9395242)1, 3, 9 Liu Y.... Oscier D. (Oncogene 1997)
  3. A genome-wide association study of bipolar disorder in Norwegian individuals, followed by replication in Icelandic sample. (PubMed id 20451256)1, 4 Djurovic S....Andreassen O.A. (J Affect Disord 2010)
  4. Comparative sequence analysis of a region on human chromosome 13q14, frequently deleted in B-cell chronic lymphocytic leukemia, and its homologous region on mouse chromosome 14. (PubMed id 11161783)1, 9 Kapanadze B....Sangfelt O. (Genomics 2000)
  5. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PubMed id 23563607)1 Berndt S.I....Ingelsson E. (Nat. Genet. 2013)
  6. Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the In Cis downregulation of a gene cluster that targets NF-kB. (PubMed id 23593011)1 Garding A....Mertens D. (PLoS Genet. 2013)
  7. DLEU2, frequently deleted in malignancy, functions as a critical host gene of the cell cycle inhibitory microRNAs miR-15a and miR-16-1. (PubMed id 19591824)1 Lerner M....Corcoran M.M. (Exp. Cell Res. 2009)
  8. Chronic lymphocytic leukemia and 13q14: miRs and more. (PubMed id 19347735)1 Mertens D....Stilgenbauer S. (amp 2009)
  9. Human RFP2 gene promoter: unique structure and unusual strength. (PubMed id 16499869)1 Skoblov M....Baranova A. (Biochem. Biophys. Res. Commun. 2006)
  10. DLEU2 encodes an antisense RNA for the putative bicistronic RFP2/LEU5 gene in humans and mouse. (PubMed id 15188451)1 Corcoran M.M....Sangfelt O. (amp 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 8847 HGNC: 13748 AceView: DLEU2 Ensembl:ENSG00000231607 euGenes: HUgn8847
ECgene: DLEU2 H-InvDB: DLEU2

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for DLEU2 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for DLEU2 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for DLEU2 gene:
Search GeneIP for patents involving DLEU2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 CLIAs for DLEU2



 Browse ESI BIO Cell Lines and PureStem Progenitors for DLEU2
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DLEU2
 Browse SwitchGear 3'UTR luciferase reporter plasmids for DLEU2
 Browse SwitchGear Promoter luciferase reporter plasmids for DLEU2
 Search ThermoFisher Antibodies for DLEU2
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat DLEU2
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for DLEU2
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for DLEU2
 Search LSBio for Antibodies for DLEU2
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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