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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DLEU2 Gene

RNA gene   GIFtS: 36
GCID: GC13M050558

deleted in lymphocytic leukemia 2 (non-protein coding)

(Previous names: ret finger protein 2 opposite strand, deleted in lymphocytic...)
(Previous symbols: DLB2, BCMSUN, RFP2OS)
 Explore 5 diseases affiliated with
DLEU2 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for DLEU2    

Aliases
for DLEU2 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 5

Aliases
Deleted In Lymphocytic Leukemia 2 (Non-Protein Coding)1 2     NCRNA000221 2
BCMSUN1 2 5     RFP2OS1 2
LEU21 2 5     TRIM13OS1 2
DLB21 2     Deleted In Lymphocytic Leukemia, 21
LINC000221 2     Ret Finger Protein 2 Opposite Strand1
MIR15AHG1 2     1B42

External Ids:    HGNC: 137481   Entrez Gene: 88472   Ensembl: ENSG000002316077   OMIM: 6057665   
ORGUL members:    fRNAdb10:FR247099      
NCBI:AY455757    
NONCODE:n345701 n378190 n405556    
RNAdb:LIT3420    

Export aliases for DLEU2 gene to outside databases

Previous GC identifers: GC13M048617 GC13M044605 GC13M049554 GC13M048415 GC13M049515 GC13M031351


Summaries
for DLEU2 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Gene Wiki entry for DLEU2

fRNAdb sequence ontology for DLEU2:
antisense_RNA - Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

Genomic Views
for DLEU2 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000013.10  NC_018924.1  NT_024524.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DLEU2 gene promoter:
         C/EBPbeta   Tal-1   Sp1   p300   RelA   E47   Evi-1   SRY   POU2F1   POU2F1a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DLEU2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DLEU2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.3   Ensembl cytogenetic band:  13q14.2   HGNC cytogenetic band: 13q14

DLEU2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DLEU2 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13M050558:  view genomic region     (about GC identifiers)

Start:
 50,556,688 bp from pter      End:
 50,699,856 bp from pter
Size:
 143,169 bases      Orientation:
 minus strand
ORGUL member locations:
Legend (see complete legend)

  • FR0247099
  • n405556
  • n378190
  • n345701
50556687 50628272 50699856 chr13

Proteins
for DLEU2 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --

Protein Domains /
Families
for DLEU2 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for DLEU2 gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
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Inhib. RNA
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In Situ Assay
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2 GenomeRNAi human phenotypes for DLEU2:
 Increased gamma-H2AX phosphory  Synthetic lethal with Ras 


Pathways & Interactions
for DLEU2 gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DLEU2

Drugs & Compounds
for DLEU2 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for DLEU2
Search CenterWatch for drugs/clinical trials and news about DLEU2 

Transcripts
for DLEU2 gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

Unigene Cluster for DLEU2:

Deleted in lymphocytic leukemia 2 (non-protein coding)
Hs.547964  [show with all ESTs]
Unigene Representative Sequence: AY455757
9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000433070(lincRNA) ENST00000421758(lincRNA) ENST00000449579(lincRNA)(uc001veb.2) ENST00000425586(lincRNA)(uc001vdn.1 uc001vdo.1)
ENST00000443587(lincRNA) ENST00000438752(lincRNA)(uc001vdv.3 uc001vdx.3) ENST00000416253(lincRNA)
ENST00000458725(lincRNA) ENST00000235290(lincRNA)(uc001vdw.3 uc001vdy.3 uc001vdz.3)


miRNA
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Inhib. RNA
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Clone
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Additional cDNA sequence: 

AF075100.1 AF264787.1 AF380424.1 AF529010.1 AY455757.1 BC006995.1 BC017819.1 BC022282.1 
BC022349.1 BC026275.1 BC030971.1 BC033120.1 BC038090.1 BC055417.1 BC070292.1 NR_002612.1 
Y15228.1 

24/27 DOTS entries (see all 27):

DT.95368067  DT.211811  DT.429069  DT.95341736  DT.95368065  DT.100778125  DT.92036879  DT.101984533 
DT.102801  DT.120774727  DT.423924  DT.208337  DT.92427427  DT.306142  DT.40194635  DT.97808131 
DT.120774777  DT.120774942  DT.91713133  DT.92427428  DT.95139977  DT.97812697  DT.120774813  DT.40235848 

24/113 AceView cDNA sequences (see all 113):

BM667166 BC038090 AI086232 CR625878 H57396 BM788401 N25204 CB120473 
AA867999 BC006995 BC030971 AF380424 BX100035 BC022282 BX090395 BM833794 
H48685 BM272409 BC055417 AL698766 BC070292 AF075100 BF941924 BQ185483 

GeneLoc Exon Structure


Expression
for DLEU2 gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for DLEU2:RNAdb

DLEU2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CATTCTTTTT

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image
Genevestigator expression for DLEU2

SOURCE GeneReport for Unigene cluster: Hs.547964
    SABiosciences Custom PCR Arrays for DLEU2
Primer
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In Situ
Assay Products: 
 		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DLEU2

Orthologs
for DLEU2 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of human and mouse.

Orthologs for DLEU2 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
mouse
(Mus musculus)		 Mammalia Dleu25 deleted in lymphocytic leukemia, 2   --   14 (33.16 cM) 61602836 


ENSEMBL Gene Tree for DLEU2 (if available)
TreeFam Gene Tree for DLEU2 (if available) 

Paralogs
for DLEU2 gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

Genomic Variants
for DLEU2 gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/1911 NCBI SNPs in DLEU2 are shown (see all 1911)     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 13 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs1114092961,2
C,--31488092(+) CTACCT/CTAAGG 1 -- us2k12Minor allele frequency- C:0.03WA 120
rs173927761,2
C,F,--31488146(+) TTCTTA/TATGTA 1 -- us2k15Minor allele frequency- T:0.02NA 264
rs1136549721,2
C,--31488476(+) GCGCCC/TGGCCG 1 -- us2k11Minor allele frequency- T:0.50WA 2
rs73250911,2
C,F,A,H,--31488664(+) ACTTTA/GAAATA 1 -- us2k114Minor allele frequency- G:0.14NS EA NA WA CSA 806
rs1180053741,2
C,F,--31489602(+) CATAGG/AAAACA 1 -- us2k11Minor allele frequency- A:0.02EA 120
rs20665881,2
C,F,--31490568(+) CCTAGG/CAGGCA 1 -- int13Minor allele frequency- C:0.50WA CSA 6
rs79917441,2
C,--31491344(+) GAACAC/TAGCTT 1 -- int15Minor allele frequency- T:0.11NA WA EA 362
rs798969631,2
--31492492(+) CCACAC/TACACC 1 -- int11Minor allele frequency- T:0.01WA 118
rs79816481,2
C,F,H,--31493050(+) CAACCA/CCACAC 1 -- nc-transcript-variant16Minor allele frequency- C:0.11NS EA NA WA 2218
rs95354191,2
H--31493673(+) ctttcC/Gccctc 1 -- int14Minor allele frequency- G:0.00NS EA 418

HapMap Linkage Disequilibrium report for DLEU2 (50556688 - 50699856 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for DLEU2
     1 CNV: 101738
     2 Indels: 45180 45181

SABiosciences Cancer Mutation PCR Assays
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Disorders / Diseases
for DLEU2 gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
DLEU2 for disorders           About GeneDecksing

OMIM gene information: 605766 605661 607947    
5 diseases for DLEU2:    About MalaCards
lymphocytic leukemia    leukemia    mantle cell lymphoma    chronic lymphocytic leukemia
bipolar disorder

Human Genome Epidemiology (HuGE) Navigator: DLEU2 (3 documents)

Export disorders for DLEU2 gene to outside databases

Publications
for DLEU2 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for DLEU2 gene, integrated from 9 sources (see all 13):
(articles sorted by number of sources associating them with DLEU2)		    Utopia: connect your pdf to the dynamic
world of online information

  1. BCMSUN, a candidate gene for B-cell chronic lymphocytic leukemia and mantle-cell lymphoma, has an independently expressed homolog on 1p22-p31, BCMSUN-like. (PubMed id 11072235)1, 3, 9 Mertens D....Lichter P. (2000)
  2. Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia. (PubMed id 9395242)1, 3, 9 Liu Y.... Oscier D. (1997)
  3. Comparative sequence analysis of a region on human chromosome 13q14, frequently deleted in B-cell chronic lymphocytic leukemia, and its homologous region on mouse chromosome 14. (PubMed id 11161783)1, 9 Kapanadze B....Sangfelt O. (2000)
  4. A genome-wide association study of bipolar disorder i n Norwegian individuals, followed by replication in Icelandic sample. (PubMed id 20451256)1 Djurovic S....Andreassen O.A. (2010)
  5. DLEU2, frequently deleted in malignancy, functions as a critical host gene of the cell cycle inhibitory microRNAs miR-15a and miR-16 -1. (PubMed id 19591824)1 Lerner M....Corcoran M.M. (2009)
  6. Chronic lymphocytic leukemia and 13q14: miRs and more . (PubMed id 19347735)1 Mertens D....Stilgenbauer S. (2009)
  7. Human RFP2 gene promoter: unique structure and unusual strength. (PubMed id 16499869)1 Skoblov M....Baranova A. (2006)
  8. DLEU2 encodes an antisense RNA for the putative bicistronic RFP2/LEU5 gene in humans and mouse. (PubMed id 15188451)1 Corcoran M.M....Sangfelt O. (2004)
  9. Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species- and human-specific antisense transcript RFP2OS. (PubMed id 14636997)1 Baranova A....Yankovsky N. (2003)
  10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

External Searches for DLEU2 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing DLEU2 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 8847 HGNC: 13748 AceView: DLEU2 Ensembl:ENSG00000231607 euGenes: HUgn8847
ECgene: DLEU2 H-InvDB: DLEU2

Other Databases showing DLEU2 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing DLEU2 gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for DLEU2 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for DLEU2 Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property
for DLEU2 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for DLEU2 gene:
Search GeneIP for patents involving DLEU2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
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About This Section

 
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